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Aliases & Descriptions for ASS1
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases ASS 2 , 3 CTLN1 1 , 2 EC 6.3.4.5 3 OTTHUMP00000022362 2 OTTHUMP00000022363 2 OTTHUMP00000022364 2
Descriptions Citrulline--aspartate ligase 3 argininosuccinate synthetase 1 argininosuccinate synthetase 1 2 citrulline-aspartate ligase 2
Search outside databases for aliases for ASS1 gene
Summaries for ASS1 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for ASS1 : The protein encoded by this gene catalyzes the penultimate step of the arginine biosyntheticpathway. There are approximately 10 to 14 copies of this gene including the pseudogenes scatteredacross the human genome, among which the one located on chromosome 9 appears to be the onlyfunctional gene for argininosuccinate synthetase. Mutations in the chromosome 9 copy of ASS causecitrullinemia. Two transcript variants encoding the same protein have been found for this gene.[provided by RefSeq] Gene Wiki entry for ASS1 (Argininosuccinate_synthetase_1)
Genomic Location for ASS1
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 9q34.1 Ensembl cytogenetic band: 9q34.11 HGNC cytogenetic band: 9q34.1 ASS1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 9 GeneLoc Exon Structure
GeneLoc location for GC09P132310:
(about GC identifiers )
Start:
132,309,915 bp from pter
End:
132,366,482 bp from pter
Size:
56,568 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000009.10 NT_035014.4 Proteins for ASS1
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: ASSY_HUMAN, P00966 (See
protein sequence )Recommended Name: Argininosuccinate synthase Size : 412 amino acids; 46530 Da
Subunit : Homotetramer
PDB structures from and Proteopedia : 2NZ2 (3D)
 
Secondary accessions : Q6LDL2 Q86UZ0 Q96GT4
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_000041.2 NP_446464.1 ENSEMBL proteins: ENSP00000253004 ENSP00000361470 ENSP00000361471 ENSP00000361469 ENSP00000361462 ENSP00000361461 Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: ASS1 1 Gene Ontology (GO) cellular component term (links to tree view) :
About this table Antibodies for ASS1: Assays for ASS1:
Protein
Domains/ Families for ASS1(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P00966 ProtoNet protein and cluster: P00966
1 Blocks protein family : IPB001518 Argininosuccinate synthase UniProtKB/Swiss-Prot: ASSY_HUMAN, P00966 Similarity : Belongs to the argininosuccinate synthase family. Type 1 subfamily
Gene Function for ASS1
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_000050 Applied Biosystems Silencer ® siRNAs for ASS1 Sigma-Aldrich siRNA and siRNA Panels for ASS1 Sigma-Aldrich shRNA for ASS1 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_000050                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_000050                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_000050  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_054012 UniProtKB/Swiss-Prot: ASSY_HUMAN, P00966 Catalytic activity : ATP + L-citrulline + L-aspartate = AMP + diphosphate +N(omega)-(L-arginino)succinate Enzyme Number (IUBMB): EC 6.3.4.5
2 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Ass1) :5 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for ASS1
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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3 Sigma-Aldrich "Your Favorite Gene" Pathways for ASS1 (Your Favorite Gene powered by Ingenuity) UniProtKB/Swiss-Prot: ASSY_HUMAN, P00966 Pathway : Amino-acid biosynthesis; L-arginine biosynthesis; L-arginine from L-ornithine andcarbamoyl phosphate: step 2/3 Pathway : Nitrogen metabolism; urea cycle; N(omega)-(L-arginino)succinic acid from L-aspartate andL-citrulline: step 1/1
5/32 Interacting proteins for ASS1 (ENSP00000361471 3 P00966 1 , 2 ) via UniProtKB, MINT, and/or STRING (see all 32
)About this table 3 Gene Ontology (GO) biological process terms (links to tree view) :
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Drugs & Compounds for ASS1 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for ASS1 10/17 Novoseek chemical compound relationships for ASS1 gene (see all 17
)
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
carbamoyl phosphate
77.55
10
8464164 (1), 9874001 (1), 19000307 (1), 15164414 (1) (see all 8 )
urea
75.82
57
19217439 (3), 8199693 (2), 1467433 (1), 9874001 (1) (see all 31 )
ornithine
69.51
19
9874001 (2), 8464164 (1), 10869432 (1), 17210712 (1) (see all 11 )
adenylosuccinate
54.42
1
11810243 (1)
delta(1)pyrroline-5-carboxylate
53.50
1
15302078 (1)
guanidinoacetate
53.13
4
16580861 (3)
nitric oxide
53.01
35
9806879 (2), 10709858 (2), 11292368 (2), 11556547 (2) (see all 17 )
asparagine
32.03
3
17854304 (1), 8435774 (1), 8548458 (1)
phosphoenolpyruvate
17.30
2
8733888 (1), 11233034 (1)
ammonium
13.19
1
8464164 (1)
About this table
Transcripts for ASS1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_000050 Sigma-Aldrich siRNA and siRNA Panels for ASS1 Sigma-Aldrich shRNA for ASS1 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_000050 NM_054012
REFSEQ mRNAs for ASS1 gene (2 alternative transcripts): NM_000050.4 NM_054012.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_000050 NM_054012
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_000050                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_000050                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_000050  
Additional cDNA sequence: AK027126.1 AK125730.1 AK293114.1 AK304625.1 AK315093.1 BC009243.2 BC013224.1 BC021676.1 BC129942.1 CR591395.1 CR592094.1 CR595936.1 CR597457.1 CR598119.1 CR598476.1 CR601739.1 CR604563.1 CR605717.1 CR605897.1 CR606149.1 CR606338.1 CR607007.1 CR608372.1 CR609148.1 CR612736.1 CR613193.1 CR615955.1 CR616527.1 CR616967.1 CR619067.1 CR620347.1 CR625815.1 X01630.1 Z36810.1
24/38 DOTS entries (see all 38
): DT.95173871 DT.119979 DT.95173856 DT.100678262 DT.95120177 DT.91771692 DT.91827937 DT.100678270 DT.95173853 DT.95173857 DT.100861593 DT.120866750 DT.100678266 DT.100678269 DT.121174157 DT.100061073 DT.100678274 DT.102828467 DT.91937962 DT.100042567 DT.100678275 DT.120758135 DT.95234117 DT.100061074
24/867 AceView cDNA sequences (see all 867
):CA428300 CA421020 CR608372 BG392449 R92705 BU683811 BM837525 AV704527 AA128188 AA512973 BC021676 AV689719 BU500723 AW004845 CA426978 AI802458 BU539553 CR606338 BI113695 BI333825 CD607242 BU173072 BU500450 BU181082
highest scoring ESTs for ASS1 :X01630 AA025145 AA026212 AA026596 AA046089 AA053546 AA111856 AA113087 AA128189 AA132447
Unigene Cluster for ASS1: Argininosuccinate synthetase 1 Hs.160786 [show with all ESTs ] Unigene Representative Sequence: AK027126 GeneLoc Exon Structure 5/11 Alternative Splicing Database (ASD) splice patterns (SP) for ASS1 (see all 11
) ExUns: 1a · 1b · 1c · 1d · 1e · 1f · 1g ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9a · 9b ^ 10 ^ 11 ^ 12a · 12b ^ 13a · 13b ^ 14 ^ 15 ^ 16a · 16b ^ SP1 :             -   -   -             -         -     -     -         SP2 :             -   -   -   -           -         -     -     -         SP3 :                   -           -         -     -     -         SP4 :             -   -   -   -         -   -         -     -     -         SP5 :             -   -     -           -                        
ExUns: 17a · 17b ^ 18 ^ 19a · 19b · 19c SP1 :             SP2 :             SP3 : -             SP4 :             SP5 :            
About this scheme ECgene alternative splicing isoforms for ASS1 6 Ensembl transcripts including schematic representations : ENST00000352480
ENST00000334909
ENST00000372394
ENST00000372393
ENST00000344866
ENST00000372386
Expression for ASS1
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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ASS1 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for ASS1 1 / 2 / 3
3 probe-sets matching ASS1 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: AACGTGCAGGSOURCE GeneReport for Unigene cluster: Hs.160786
Orthologs for ASS1
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for ASS1 gene from 5/20 species (see all 20
)
About this table Species with no ortholog for ASS1 ENSEMBL Gene Tree for ASS1 Paralogs for ASS1 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Pseudogenes 10 related pseudogenes
SNPs/Variants for ASS1 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for ASS1 (up to first 250kb)
Disorders & Mutations for ASS1
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 603470 UniProtKB/Swiss-Prot: ASSY_HUMAN, P00966
Defects in ASS1 are the cause of citrullinemia type 1 (CTLN1) [MIM:215700]. Citrullinemiabelongs to the urea cycle disorders. It is an autosomal recessive disease characterized primarilyby elevated serum and urine citrulline levels. Ammonia intoxication is another manifestation.CTLN1 usually manifests in the first few days of life. Affected infants appear normal at birth,but as ammonia builds up in the body they present symptoms such as lethargy, poor feeding,vomiting, seizures and loss of consciousness. Less commonly, a milder CTLN1 form can develop laterin childhood or adulthood
10/26 Novoseek disease relationships for ASS1 gene (see all 26
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
citrullinemia
98.57
120
8105687 (5), 14770441 (4), 7556646 (3), 14680976 (3) (see all 53 )
citrullinemia classical
95.87
9
9090528 (2), 8419623 (1), 18473344 (1), 7557970 (1) (see all 6 )
ctln2
93.17
23
11153906 (2), 10369257 (2), 12602510 (1), 14606711 (1) (see all 10 )
argininosuccinate lyase deficiency
90.97
9
16580861 (2), 10869432 (1), 15164414 (1), 19217439 (1) (see all 6 )
hyperammonemia
85.47
10
10097149 (1), 12542919 (1), 15347874 (1), 7699832 (1) (see all 7 )
carbamoyl phosphate synthetase deficiency
82.30
1
1720458 (1)
lysinuric protein intolerance
75.84
2
1568044 (1), 12450676 (1)
orotic aciduria
69.95
1
17513443 (1)
hyperargininemia
67.51
1
15164414 (1)
ornithine transcarbamylase deficiency
66.57
2
10869432 (1), 15164414 (1)
About this table GeneTests: ASS1 Citrullinemia Type I Human Gene Mutation Database : ASS1
Medical News for ASS1 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for ASS1 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/179 PubMed articles for ASS1 gene (see all 179
): Characterization of human wild-type and mutant argininosuccinate synthetase proteins expressed in bacterial cells. (PubMed id 8792870) 1, 3, 4 Shaheen N....Saheki T. (1995) Identification of 16 novel mutations in the argininosuccinate synthetase gene and genotype-phenotype correlation in 38 classical citrullinemia patients. (PubMed id 12815590) 1, 3, 4 Gao H.-Z.... Saheki T. (2003) Structure of the human argininosuccinate synthetase gene and an improved system for molecular diagnostics in patients with classical and mild citrullinemia. (PubMed id 11941481) 1, 3, 4 Haeberle J.... Koch H.G. (2002) Additional mutations in argininosuccinate synthetase causing citrullinemia. (PubMed id 1943692) 1, 3, 4 Kobayashi K.... O'Brien W.E. (1991) Heterogeneity of mutations in argininosuccinate synthetase causing human citrullinemia. (PubMed id 2358466) 1, 3, 4 Kobayashi K.... Beaudet A.L. (1990) Mutations in argininosuccinate synthetase mRNA of Japanese patients, causing classical citrullinemia. (PubMed id 7977368) 1, 3, 4 Kobayashi K.... Saheki T. (1994) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 3, 4 Ota T....Sugano S. (2004) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Phenotype and genotype heterogeneity in Mediterranean citrullinemia. (PubMed id 11708871) 3, 4 Vilaseca M.A.... Saheki T. (2001) A two-dimensional gel database of human colon carcinoma proteins. (PubMed id 9150948) 3, 4 Ji H.... Simpson R.J. (1997)
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Genome Databases showing ASS1
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing ASS1
(According to HUGE )
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Specialized Databases showing ASS1 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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Name Description
GeneReviews http://www.genetests.org/query?gene=ASS1
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-- Services for ASS1 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for ASS1:
Recombinant Proteins (ASS1 ) Antibodies (ASS1 )
Search Tocris compounds for ASS1
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009