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Aliases for ASPSCR1 Gene

Aliases for ASPSCR1 Gene

  • ASPSCR1, UBX Domain Containing Tether For SLC2A4 2 3 5
  • Alveolar Soft Part Sarcoma Chromosomal Region Candidate Gene 1 Protein 3 4
  • Alveolar Soft Part Sarcoma Chromosome Region, Candidate 1 2 3
  • Renal Papillary Cell Carcinoma Protein 17 3 4
  • Tether Containing UBX Domain For GLUT4 2 3
  • Alveolar Soft Part Sarcoma Locus 3 4
  • UBX Domain-Containing Protein 9 3 4
  • UBX Domain Protein 9 2 3
  • RCC17 3 4
  • UBXD9 3 4
  • UBXN9 3 4
  • ASPL 3 4
  • TUG 3 4
  • Renal Cell Carcinoma Gene On Chromosome 17 3
  • Renal Cell Carcinoma, Papillary, 17 3
  • ASPCR1 3
  • ASPS 3

External Ids for ASPSCR1 Gene

Previous GeneCards Identifiers for ASPSCR1 Gene

  • GC17M079495
  • GC17M9J0113
  • GC17P080471
  • GC17P080614
  • GC17P077529
  • GC17P079935
  • GC17P075336

Summaries for ASPSCR1 Gene

Entrez Gene Summary for ASPSCR1 Gene

  • The protein encoded by this gene contains a UBX domain and interacts with glucose transporter type 4 (GLUT4). This protein is a tether, which sequesters the GLUT4 in intracellular vesicles in muscle and fat cells in the absence of insulin, and redistributes the GLUT4 to the plasma membrane within minutes of insulin stimulation. Translocation t(X;17)(p11;q25) of this gene with transcription factor TFE3 gene results in a ASPSCR1-TFE3 fusion protein in alveolar soft part sarcoma and in renal cell carcinomas. Multiple alternatively spliced transcript variants have been found. [provided by RefSeq, Oct 2011]

GeneCards Summary for ASPSCR1 Gene

ASPSCR1 (ASPSCR1, UBX Domain Containing Tether For SLC2A4) is a Protein Coding gene. Diseases associated with ASPSCR1 include Alveolar Soft-Part Sarcoma and Renal Cell Carcinoma, Papillary. Among its related pathways are Vesicle-mediated transport and Transcriptional misregulation in cancer. An important paralog of this gene is UBXN6.

UniProtKB/Swiss-Prot for ASPSCR1 Gene

  • Tethering protein that sequesters GLUT4-containing vesicles in the cytoplasm in the absence of insulin. Modulates the amount of GLUT4 that is available at the cell surface (By similarity). Enhances VCP methylation catalyzed by VCPKMT.

Gene Wiki entry for ASPSCR1 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ASPSCR1 Gene

Genomics for ASPSCR1 Gene

Regulatory Elements for ASPSCR1 Gene

Enhancers for ASPSCR1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17F081999 0.2 ENCODE 17.2 +24.0 24011 2.3 MLX ARID4B DMAP1 ZNF48 SLC30A9 PAF1 SP5 NFYC MXD4 PPARG ASPSCR1 CENPX GC17P081992 PIR31721
GH17F081966 1.3 FANTOM5 ENCODE 15.7 -9.2 -9199 2.9 HDGF PKNOX1 MLX ARID4B DMAP1 ZNF2 YY1 SLC30A9 CBX5 ZNF416 ENSG00000229947 ASPSCR1 CEP131 GCGR TSPAN10 ENSG00000264735 GC17M081968
GH17F081962 0.5 ENCODE 14.4 -13.8 -13780 1.8 MLX ARID4B DMAP1 DNMT3B ZNF143 SMARCA5 MXD4 REST TBX21 TGIF2 ENSG00000262049 ASPSCR1 HGS ENSG00000265678 OGFOD3 NARF-IT1 ARL2BPP9 ENSG00000262652 ENSG00000262663 TEPSIN
GH17F081990 1.5 FANTOM5 Ensembl ENCODE 12.5 +15.0 15040 2.9 MLX ZFP64 ARID4B DMAP1 ZNF48 BRCA1 ZNF121 SLC30A9 PAF1 SP5 ENSG00000262049 ASPSCR1 GPS1 CEP131 ENSG00000265678 ARL16 RFNG ENSG00000262877 SLC25A10 DCXR
GH17F082011 0.2 ENCODE 12.1 +36.7 36651 3.3 ELF3 ARID4B THRB RAD21 RARA GLIS2 ZNF143 PAF1 ZNF263 ZNF654 CENPX DCXR ASPSCR1 MYADML2 LOC105371938 PYCR1 MAFG SIRT7 PCYT2 NPB
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around ASPSCR1 on UCSC Golden Path with GeneCards custom track

Promoters for ASPSCR1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001355487 893 1801 PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF143 ZNF207

Genomic Location for ASPSCR1 Gene

Chromosome:
17
Start:
81,976,807 bp from pter
End:
82,017,563 bp from pter
Size:
40,757 bases
Orientation:
Plus strand

Genomic View for ASPSCR1 Gene

Genes around ASPSCR1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ASPSCR1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ASPSCR1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ASPSCR1 Gene

Proteins for ASPSCR1 Gene

  • Protein details for ASPSCR1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BZE9-ASPC1_HUMAN
    Recommended name:
    Tether containing UBX domain for GLUT4
    Protein Accession:
    Q9BZE9
    Secondary Accessions:
    • A8K3K9
    • Q7Z6N7
    • Q8WV59
    • Q96LS5
    • Q96M40

    Protein attributes for ASPSCR1 Gene

    Size:
    553 amino acids
    Molecular mass:
    60183 Da
    Quaternary structure:
    • Interacts with GLUT4 (By similarity). Interacts with VCPKMT. Interacts with VCP.

    Alternative splice isoforms for ASPSCR1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ASPSCR1 Gene

Post-translational modifications for ASPSCR1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for ASPSCR1 Gene

Domains & Families for ASPSCR1 Gene

Gene Families for ASPSCR1 Gene

Protein Domains for ASPSCR1 Gene

Suggested Antigen Peptide Sequences for ASPSCR1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9BZE9

UniProtKB/Swiss-Prot:

ASPC1_HUMAN :
  • Contains 1 UBX domain.
Domain:
  • Contains 1 UBX domain.
genes like me logo Genes that share domains with ASPSCR1: view

Function for ASPSCR1 Gene

Molecular function for ASPSCR1 Gene

UniProtKB/Swiss-Prot Function:
Tethering protein that sequesters GLUT4-containing vesicles in the cytoplasm in the absence of insulin. Modulates the amount of GLUT4 that is available at the cell surface (By similarity). Enhances VCP methylation catalyzed by VCPKMT.

Gene Ontology (GO) - Molecular Function for ASPSCR1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
GO:0005515 protein binding IPI 18775313
genes like me logo Genes that share ontologies with ASPSCR1: view
genes like me logo Genes that share phenotypes with ASPSCR1: view

Human Phenotype Ontology for ASPSCR1 Gene

HPO Id HPO Name Alternative Ids Definition Synonyms

Animal Model Products

miRNA for ASPSCR1 Gene

miRTarBase miRNAs that target ASPSCR1

Inhibitory RNA Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targets and HOMER Transcription for ASPSCR1 Gene

Localization for ASPSCR1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ASPSCR1 Gene

Endomembrane system; Peripheral membrane protein. Endoplasmic reticulum-Golgi intermediate compartment membrane; Peripheral membrane protein. Cytoplasm. Nucleus.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ASPSCR1 Gene COMPARTMENTS Subcellular localization image for ASPSCR1 gene
Compartment Confidence
nucleus 5
plasma membrane 5
cytosol 3
mitochondrion 2
cytoskeleton 1
endosome 1

Gene Ontology (GO) - Cellular Components for ASPSCR1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005575 cellular_component ND --
GO:0005634 nucleus IEA --
GO:0005654 nucleoplasm IDA --
GO:0005737 cytoplasm IEA --
GO:0005829 cytosol IEA --
genes like me logo Genes that share ontologies with ASPSCR1: view

Pathways & Interactions for ASPSCR1 Gene

genes like me logo Genes that share pathways with ASPSCR1: view

Pathways by source for ASPSCR1 Gene

1 Cell Signaling Technology pathway for ASPSCR1 Gene
1 KEGG pathway for ASPSCR1 Gene

SIGNOR curated interactions for ASPSCR1 Gene

Activates:

Gene Ontology (GO) - Biological Process for ASPSCR1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006886 intracellular protein transport IEA --
GO:0008150 biological_process ND --
GO:0042593 glucose homeostasis IEA --
GO:0046324 regulation of glucose import IEA --
genes like me logo Genes that share ontologies with ASPSCR1: view

Transcripts for ASPSCR1 Gene

Unigene Clusters for ASPSCR1 Gene

Alveolar soft part sarcoma chromosome region, candidate 1:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ASPSCR1 Gene

ExUns: 1 ^ 2a · 2b · 2c ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b ^ 8 ^ 9 ^ 10a · 10b · 10c · 10d · 10e · 10f ^ 11a · 11b · 11c · 11d ^ 12 ^ 13 ^ 14 ^ 15 ^
SP1:
SP2:
SP3: - -
SP4:
SP5: - - - - - -
SP6: - - -
SP7: - - -
SP8: - - - -
SP9: -
SP10:
SP11:

ExUns: 16a · 16b ^ 17 ^ 18a · 18b ^ 19
SP1: -
SP2: - -
SP3:
SP4: -
SP5:
SP6:
SP7:
SP8:
SP9:
SP10:
SP11:

Relevant External Links for ASPSCR1 Gene

GeneLoc Exon Structure for
ASPSCR1
ECgene alternative splicing isoforms for
ASPSCR1

Expression for ASPSCR1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ASPSCR1 Gene

Protein differential expression in normal tissues from HIPED for ASPSCR1 Gene

This gene is overexpressed in Testis (12.8) and Peripheral blood mononuclear cells (12.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for ASPSCR1 Gene



Protein tissue co-expression partners for ASPSCR1 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of ASPSCR1 Gene:

ASPSCR1

SOURCE GeneReport for Unigene cluster for ASPSCR1 Gene:

Hs.298351

mRNA Expression by UniProt/SwissProt for ASPSCR1 Gene:

Q9BZE9-ASPC1_HUMAN
Tissue specificity: Ubiquitous. Highly expressed in testis, heart, skeletal muscle and pancreas.
genes like me logo Genes that share expression patterns with ASPSCR1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA differential expression in normal tissues for ASPSCR1 Gene

Orthologs for ASPSCR1 Gene

This gene was present in the common ancestor of animals.

Orthologs for ASPSCR1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ASPSCR1 34 35
  • 98.45 (n)
mouse
(Mus musculus)
Mammalia Aspscr1 34 16 35
  • 82.09 (n)
cow
(Bos Taurus)
Mammalia ASPSCR1 34 35
  • 81.9 (n)
dog
(Canis familiaris)
Mammalia ASPSCR1 34 35
  • 81.52 (n)
rat
(Rattus norvegicus)
Mammalia Aspscr1 34
  • 81.41 (n)
chicken
(Gallus gallus)
Aves ASPSCR1 34
  • 61.29 (n)
gga-mir-6599 35
  • 51 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia ASPSCR1 35
  • 55 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia aspscr1 34
  • 57.86 (n)
Str.1031 34
African clawed frog
(Xenopus laevis)
Amphibia Xl.16681 34
zebrafish
(Danio rerio)
Actinopterygii aspscr1 34 35 35
  • 57.21 (n)
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.14193 34
fruit fly
(Drosophila melanogaster)
Insecta CG33722 35
  • 28 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea B0024.10 35
  • 20 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 29 (a)
OneToMany
CSA.1140 35
  • 28 (a)
OneToMany
Species where no ortholog for ASPSCR1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for ASPSCR1 Gene

ENSEMBL:
Gene Tree for ASPSCR1 (if available)
TreeFam:
Gene Tree for ASPSCR1 (if available)

Paralogs for ASPSCR1 Gene

Paralogs for ASPSCR1 Gene

genes like me logo Genes that share paralogs with ASPSCR1: view

Variants for ASPSCR1 Gene

Sequence variations from dbSNP and Humsavar for ASPSCR1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs11077964 -- 82,008,611(+) ATGGA(G/T)TCAGC intron-variant
rs111271806 -- 81,994,434(+) CCCTG(A/C)CTCTC intron-variant
rs111277254 -- 82,010,834(+) CGCTA(C/T)GTCCT nc-transcript-variant, reference, synonymous-codon
rs111319132 -- 81,983,306(+) CCCCT(A/C)GGCGT intron-variant
rs111348786 -- 82,006,263(+) GGGGC(A/G)TGTGC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ASPSCR1 Gene

Variant ID Type Subtype PubMed ID
dgv5800n54 CNV loss 21841781
esv1006218 CNV insertion 20482838
esv21913 CNV gain+loss 19812545
esv3641410 CNV loss 21293372
esv3641412 CNV loss 21293372
esv3641413 CNV gain 21293372
nsv428351 CNV gain 18775914
nsv457975 CNV loss 19166990
nsv470620 CNV loss 18288195
nsv576183 CNV loss 21841781
nsv833569 CNV loss 17160897
nsv833571 CNV loss 17160897
nsv952392 CNV deletion 24416366

Variation tolerance for ASPSCR1 Gene

Residual Variation Intolerance Score: 19.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 10.21; 90.47% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ASPSCR1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ASPSCR1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ASPSCR1 Gene

Disorders for ASPSCR1 Gene

MalaCards: The human disease database

(7) MalaCards diseases for ASPSCR1 Gene - From: OMIM, Orphanet, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
alveolar soft-part sarcoma
  • alveolar soft part sarcoma
renal cell carcinoma, papillary
  • renal cell carcinoma, papillary, 1
sarcoma
  • connective and soft tissue neoplasm
renal cell carcinoma
  • renal cell carcinoma, clear cell, somatic
skeletal muscle cancer
  • malignant tumor of skeletal muscle
- elite association - COSMIC cancer census association via MalaCards

UniProtKB/Swiss-Prot

ASPC1_HUMAN
  • Note=A chromosomal aberration involving ASPSCR1 has been found in two patients with of papillary renal cell carcinoma. Translocation t(X;17)(p11.2;q25). {ECO:0000269 PubMed:11358836}.
  • Note=A chromosomal aberration involving ASPSCR1 is found in patients with alveolar soft part sarcoma. Translocation t(X;17)(p11;q25) with TFE3 forms a ASPSCR1-TFE3 fusion protein. {ECO:0000269 PubMed:11244503}.

Relevant External Links for ASPSCR1

Genetic Association Database (GAD)
ASPSCR1
Human Genome Epidemiology (HuGE) Navigator
ASPSCR1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ASPSCR1
genes like me logo Genes that share disorders with ASPSCR1: view

No data available for Genatlas for ASPSCR1 Gene

Publications for ASPSCR1 Gene

  1. The der(17)t(X;17)(p11;q25) of human alveolar soft part sarcoma fuses the TFE3 transcription factor gene to ASPL, a novel gene at 17q25. (PMID: 11244503) Ladanyi M. … Bridge J. (Oncogene 2001) 2 3 4 22 64
  2. Fusion of a novel gene, RCC17, to the TFE3 gene in t(X;17)(p11.2;q25.3)-bearing papillary renal cell carcinomas. (PMID: 11358836) Heimann P. … Vassart G. (Cancer Res. 2001) 3 4 22 64
  3. A newly uncovered group of distantly related lysine methyltransferases preferentially interact with molecular chaperones to regulate their activity. (PMID: 23349634) Cloutier P. … Coulombe B. (PLoS Genet. 2013) 3 4 64
  4. The ubiquitin regulatory X (UBX) domain-containing protein TUG regulates the p97 ATPase and resides at the endoplasmic reticulum-golgi intermediate compartment. (PMID: 22207755) Orme C.M. … Bogan J.S. (J. Biol. Chem. 2012) 3 4 64
  5. Identification of type 2 diabetes-associated combination of SNPs using support vector machine. (PMID: 20416077) Ban H.J. … Park K.J. (BMC Genet. 2010) 3 46 64

Products for ASPSCR1 Gene

Sources for ASPSCR1 Gene

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