Aliases for ASMTL-AS1 Gene
Subcategory (RNA class) for ASMTL-AS1 Gene
non-coding RNA
Quality Score for this RNA gene is
3
Aliases for ASMTL-AS1 Gene
External Ids for ASMTL-AS1 Gene
- HGNC: 25811
- Entrez Gene: 80161
- Ensembl: ENSG00000236017
Previous HGNC Symbols for ASMTL-AS1 Gene
- CXYorf2
- NCRNA00105
- ASMTLAS
- ASMTL-AS
Previous GeneCards Identifiers for ASMTL-AS1 Gene
- GC0XP001521
Summaries for ASMTL-AS1 Gene
-
This gene serves as the antisense to the acetylserotonin O-methyltransferase-like gene. Multiple non-coding transcript variants have been found for this gene. [provided by RefSeq, Oct 2011]
GeneCards Summary for ASMTL-AS1 Gene
ASMTL-AS1 (ASMTL Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.
No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ASMTL-AS1 Gene
Genomics for ASMTL-AS1 Gene
Regulatory Elements for ASMTL-AS1 Gene
Enhancers for ASMTL-AS1 Gene
| GeneHancer Identifier | Enhancer Score | Enhancer Sources | Gene-Enhancer Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites within enhancer | Gene Targets for Enhancer |
|---|---|---|---|---|---|---|---|---|
| GH0XG001405 | 0.7 | FANTOM5 | 0.4 | +5.1 | 5127 | 0.3 | HDGF ZNF114 ZNF473 ZNF571 YBX1 ZNF776 ZNF366 IKZF1 TARDBP EED | AKAP17A ASMT ASMTL SLC25A6 CRLF2 P2RY8 CSF2RA IL3RA ASMTL-AS1 |
- Elite enhancer and/or Elite enhancer-gene association
Download GeneHancer data dump
Enhancers around ASMTL-AS1 on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Location for ASMTL-AS1 Gene
- Chromosome:
- X
- Start:
- 1,400,531 bp from pter
- End:
- 1,415,421 bp from pter
- Size:
- 14,891 bases
- Orientation:
- Plus strand
Genomic View for ASMTL-AS1 Gene
Genes around ASMTL-AS1 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- Xp22.33 by Ensembl
- Xp22.33 and Yp11.2 by Entrez Gene
- Xp22.33 and Yp11.32 by HGNC
ASMTL-AS1 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for ASMTL-AS1 Gene
Proteins for ASMTL-AS1 Gene
Post-translational modifications for ASMTL-AS1 Gene
No Post-translational modifications
Antibody Products
- Search GeneTex for Antibodies for ASMTL-AS1
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for ASMTL-AS1
- Origene Custom Protein Services for ASMTL-AS1
- Search GeneTex for Proteins for ASMTL-AS1
Assay Products
No data available for DME Specific Peptides for ASMTL-AS1 Gene
Domains & Families for ASMTL-AS1 Gene
Gene Families for ASMTL-AS1 Gene
Graphical View of Domain Structure for InterPro Entry
No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ASMTL-AS1 Gene
Function for ASMTL-AS1 Gene
Phenotypes for ASMTL-AS1 Gene
- GenomeRNAi human phenotypes for ASMTL-AS1:
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for ASMTL-AS1
-
- Search ViGene Biosciences for ASMTL-AS1
CRISPR Products
- Browse CRISPR knockouts for ASMTL-AS1
miRNA Products
- Search ViGene Biosciences for ASMTL-AS1
Inhibitory RNA Products
- Origene RNAi and shRNA products in human, mouse, rat for ASMTL-AS1
- Browse OriGene Inhibitory RNA Products For ASMTL-AS1
- Search ViGene Biosciences for ASMTL-AS1
Clone Products
- GenScript: Custom all cDNA clones Services for ASMTL-AS1
- VectorBuilder custom plasmid, inducible vectors for ASMTL-AS1
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for ASMTL-AS1
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Cell Line Products
- Search ViGene Biosciences for ASMTL-AS1
Flow Cytometry Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ASMTL-AS1 Gene
Localization for ASMTL-AS1 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ASMTL-AS1 Gene
Transcripts for ASMTL-AS1 Gene
mRNA/cDNA for ASMTL-AS1 Gene
- (1) REFSEQ mRNAs :
- (5) Additional mRNA sequences :
- (25) Selected AceView cDNA sequences:
- (5) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for ASMTL-AS1 Gene
CRISPR Products
- Browse CRISPR knockouts for ASMTL-AS1
miRNA Products
- Search ViGene Biosciences for ASMTL-AS1
Inhibitory RNA Products
- Origene RNAi and shRNA products in human, mouse, rat for ASMTL-AS1
- Browse OriGene Inhibitory RNA Products For ASMTL-AS1
- Search ViGene Biosciences for ASMTL-AS1
Clone Products
- GenScript: Custom all cDNA clones Services for ASMTL-AS1
- VectorBuilder custom plasmid, inducible vectors for ASMTL-AS1
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for ASMTL-AS1
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Flow Cytometry Products
Expression for ASMTL-AS1 Gene
SOURCE GeneReport for Unigene cluster for ASMTL-AS1 Gene:
Hs.521856Primer Products
-
OriGene qPCR primer pairs for ASMTL-AS1
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ASMTL-AS1 Gene
Orthologs for ASMTL-AS1 Gene
No data available for Orthologs for ASMTL-AS1 Gene
Paralogs for ASMTL-AS1 Gene
No data available for Paralogs for ASMTL-AS1 Gene
Variants for ASMTL-AS1 Gene
| SNP ID | Clin | Chr 0X pos | Sequence Context | AA Info | Type |
|---|---|---|---|---|---|
| rs111252091 | -- | 1,400,838(+) | CAGCC(A/T)ATTTC | intron-variant | |
| rs111440342 | -- | 1,401,109(+) | CCCAG(A/G)AGGCG | intron-variant | |
| rs111775270 | -- | 1,400,694(+) | CACTA(C/T)GCCCG | intron-variant | |
| rs111820251 | -- | 1,399,174(+) | GCTCT(C/G)CAGGG | upstream-variant-2KB | |
| rs111950083 | -- | 1,399,507(+) | GACCA(A/C/G)CCTGG | upstream-variant-2KB |
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| dgv1299e201 | CNV | deletion | 23290073 |
| esv21933 | CNV | gain+loss | 19812545 |
| esv2662469 | CNV | deletion | 23128226 |
| esv2666429 | CNV | deletion | 23128226 |
| esv2667783 | CNV | deletion | 23128226 |
| esv2669866 | CNV | deletion | 23128226 |
| esv2678263 | CNV | deletion | 23128226 |
| esv2739698 | CNV | deletion | 23290073 |
| esv2739699 | CNV | deletion | 23290073 |
| esv2739700 | CNV | deletion | 23290073 |
| esv2739701 | CNV | deletion | 23290073 |
| esv2739702 | CNV | deletion | 23290073 |
| esv2739703 | CNV | deletion | 23290073 |
| esv2739704 | CNV | deletion | 23290073 |
| esv2739705 | CNV | deletion | 23290073 |
| esv29996 | CNV | loss | 17803354 |
| esv3558484 | CNV | deletion | 23714750 |
| nsv1075349 | CNV | deletion | 25765185 |
| nsv1076695 | CNV | duplication | 25765185 |
| nsv1077213 | CNV | deletion | 25765185 |
| nsv1078699 | CNV | duplication | 25765185 |
| nsv1115920 | CNV | duplication | 24896259 |
| nsv1119323 | CNV | duplication | 24896259 |
| nsv1119379 | CNV | duplication | 24896259 |
| nsv1126960 | CNV | deletion | 24896259 |
| nsv1144311 | CNV | deletion | 24896259 |
| nsv1152984 | CNV | duplication | 26484159 |
| nsv953723 | CNV | deletion | 24416366 |
Relevant External Links for ASMTL-AS1 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- ASMTL-AS1
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ASMTL-AS1 Gene
Disorders for ASMTL-AS1 Gene
Relevant External Links for ASMTL-AS1
- Atlas of Genetics and Cytogenetics in Oncology and Haematology:
- ASMTL-AS1
No disorders were found for ASMTL-AS1 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ASMTL-AS1 Gene
Publications for ASMTL-AS1 Gene
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 2 3 64
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64
Products for ASMTL-AS1 Gene
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- Browse Primary Antibodies
- Browse Proteins and Enzymes
- Browse ELISAs
- Browse Activity Assays
- Browse cDNA Clones
- Browse Cell Culture Products
- Browse Cell Selection and Detection Kits
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- Browse ELISpot/FluoroSpot Kits and Development Modules
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- Browse Immunoprecipitation Assays
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- Browse Peptides
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- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for ASMTL-AS1
- Origene Custom Protein Services for ASMTL-AS1
- Origene shRNA and RNAi products in human, mouse, rat for ASMTL-AS1
- Browse OriGene Inhibitory RNA Products For ASMTL-AS1
- OriGene qPCR primer pairs for ASMTL-AS1
- Browse CRISPR knockouts for ASMTL-AS1
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
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- GenScript: Custom all cDNA clones Services for ASMTL-AS1
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- Browse Sino Biological cDNA Clones
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- Sino Biological CRO Services for Proteins, Antibodies and Genes
- Sino Biological Transfection Reagents
- Novus Biologicals
- Novus Biologicals Tissue Microarrays
- Cyagen custom Knockout/knockin (KOKI) mouse models for ASMTL-AS1
- VectorBuilder custom plasmid, inducible vectors for ASMTL-AS1
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for ASMTL-AS1
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for ASMTL-AS1 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
- (54) H-invDB
- (55) HORDE
- (56) HUGE
- (57) IMGT
- (58) Leiden
- (59) MILLIPORE
- (60) miRBase
- (61) DME
- (62) NCBI
- (63) OriGene
- (64) PubMed
- (65) R&D Systems
- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus
- (70) ProSpec
- (71) Sino Biological
- (72) GenScript
- (73) Qiagen
- (74) Cloud-Clone Corp.
- (75) Enzo Life Sciences
- (76) OCA
- (77) Proteopedia
- (78) MOPED
- (79) SPIRE
- (80) neXtProt
- (81) Reactome
- (82) GeneGo (Thomson Reuters)
- (83) fRNAdb
- (84) DISEASES
- (85) SIMAP
- (86) GenomeRNAi
- (87) LifeMap
- (88) miRTarBase
- (89) MalaCards
- (90) Invitrogen
- (91) BitterDB
- (92) Vector BioLabs
- (93) ESI-BIO
- (94) RefSeq
- (95) BioSystems
- (96) MaxQB
- (97) IUPHAR
- (98) BioGPS
- (99) Illumina
- (100) COMPARTMENTS
- (101) HOMER
- (102) PaxDb
- (103) ApexBio
- (104) Addgene
- (105) antibodies-online
- (106) CYP
- (107) NONCODE
- (108) SwitchGear Genomics
- (109) TreeFam
- (110) PathCards
- (111) GeneReviews
- (112) GeneTex
- (113) Taconic Biosciences
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- (115) ProteomicsDB
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- (141) ENCODE
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- (151) CIViC
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- (153) dbSUPER
- (154) TISSUES
- (155) Gene ORGANizer