ASMTL-AS1 Gene
RNA gene GIFtS: 26
GCID: GC0XP001521
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ASMTL antisense RNA 1(Previous names: chromosome X and Y open reading frame 2, non-protein coding...)
(Previous symbols: CXYorf2, NCRNA00105, ASMTLAS, ASMTL-AS)
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Aliases
for ASMTL-AS1 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
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Subcategory (RNA class): lncRNA
Quality score for this RNA gene is 3
| Aliases |
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| ASMTL Antisense RNA 11 2 | | FLJ133301 | | ASMTL-AS1 2 | | ASMTL Antisense RNA (Non-Protein Coding)1 | | ASMTLAS1 2 | | ASMTL Antisense RNA 1 (Non-Protein Coding)1 | | CXYorf21 2 | | Chromosome X And Y Open Reading Frame 21 | | NCRNA001051 2 | | Non-Protein Coding RNA 1051 |
| External Ids: | HGNC: 258111 | Entrez Gene: 801612 | Ensembl: ENSG000002360177 | | ORGUL members: | |
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| NONCODE:n407243 n407245 | |
Export aliases for ASMTL-AS1 gene to outside databases
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Summaries
for ASMTL-AS1 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
Entrez Gene summary for ASMTL-AS1:
This gene serves as the antisense to the acetylserotonin O-methyltransferase-like gene. Multiple non-coding transcriptvariants have been found for this gene. (provided by RefSeq, Oct 2011)
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Genomic Views
for ASMTL-AS1 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000023.10 NC_000024.9 NC_018934.1 NT_167196.1 NT_167204.1
Regulatory elements:
 Search SABiosciences Regulatory transcription factor binding sites for ASMTL-AS1
Other transcription factors
Search SABiosciences Chromatin IP Primers for ASMTL-AS1
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ASMTL-AS1 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: Xp22.33; Yp11.32 Ensembl cytogenetic band: Xp22.33 HGNC cytogenetic band: Xp22.33 and Yp11.32ASMTL-AS1 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome X GeneLoc Exon Structure GeneLoc location for GC0XP001521: view genomic region
(about GC identifiers)
Start:
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1,519,424 bp from pter |
End:
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1,534,319 bp from pter |
Size:
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14,896 bases |
Orientation:
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plus strand |
1 alternative location:
| ChrY+ 1,469,424-1,484,314 |
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Proteins
for ASMTL-AS1 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
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UniProtKB: --
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Protein
Domains /
Families
for ASMTL-AS1 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
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Function
for ASMTL-AS1 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
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In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ASMTL-AS1 |
1 GenomeRNAi human phenotype for ASMTL-AS1:
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Pathways & Interactions
for ASMTL-AS1 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
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Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for ASMTL-AS1
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Drugs & Compounds
for ASMTL-AS1 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for ASMTL-AS1
Search CenterWatch for drugs/clinical trials and news about ASMTL-AS1 
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Transcripts
for ASMTL-AS1 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
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REFSEQ mRNAs for ASMTL-AS1 gene: NM_025091.2 Unigene Cluster for ASMTL-AS1: ASMTL antisense RNA 1 Hs.521856 [show with all ESTs]Unigene Representative Sequence: NR_0267114 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000419737(uc004cpw.3) ENST00000420411(uc004cpv.3) ENST00000443929
ENST00000425740
Primer
Products: |  | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for ASMTL-AS1
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse / rat ASMTL-AS1 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat ASMTL-AS1 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat ASMTL-AS1 |
Additional cDNA sequence: AF193043.2 BC093994.2 BC143527.1 NR_026710.1 NR_026711.1 14 DOTS entries: DT.92417028 DT.95120677 DT.120654260 DT.40233513 DT.121289293 DT.97858400 DT.120653725 DT.70104184 DT.92417029 DT.95206855 DT.120654256 DT.91904412 DT.95317447 DT.99993471 24/26 AceView cDNA sequences (see all 26): AI417696 AI872056 CD722309 AL602802 BF902125 CA415362 AV656310 AI792727 CF455161 AI758898 AW373098 AW384615 AW581199 AF193043 AW373080 NM_025091 AW384597 AL079640 AK023392 AU134359 BE833047 CA314880 AI620152 BI046927
GeneLoc Exon Structure
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Expression
for ASMTL-AS1 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| Expression evidence for ASMTL-AS1:none
ASMTL-AS1 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: AATGCTGATC
About this image
Genevestigator expression for ASMTL-AS1
SOURCE GeneReport for Unigene cluster: Hs.521856
SABiosciences Custom PCR Arrays for ASMTL-AS1
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for ASMTL-AS1
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse / rat ASMTL-AS1 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat ASMTL-AS1 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat ASMTL-AS1 | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ASMTL-AS1 |
Orthologs
for ASMTL-AS1 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
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ENSEMBL Gene Tree for ASMTL-AS1 (if available)
TreeFam Gene Tree for ASMTL-AS1 (if available) |
Paralogs
for ASMTL-AS1 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
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Genomic Variants
for ASMTL-AS1 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
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Locus Specific Mutation Databases (LSDB): ASMTL-AS1
| SABiosciences Cancer Mutation PCR Assays |
| | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing ASMTL-AS1 |
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Disorders
/ Diseases
for ASMTL-AS1 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
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Publications
for ASMTL-AS1 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
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PubMed articles for ASMTL-AS1 gene integrated from 9 sources:
(articles sorted by number of sources associating them with ASMTL-AS1) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 3 Ota T.... Sugano S. (2004)
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
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External Searches for ASMTL-AS1 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
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Genome Databases showing ASMTL-AS1 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
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Other Databases showing ASMTL-AS1 gene
(According to HUGE)
About This Section
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Specialized Databases showing ASMTL-AS1 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
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| Name | Description |
| PharmGKB entry for ASMTL-AS1 | Pharmacogenomics, SNPs, Pathways |
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About This Section
| Patent Information for ASMTL-AS1 gene:
Search GeneIP for patents involving ASMTL-AS1
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for ASMTL-AS1 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
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|  | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat ASMTL-AS1 | | | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing ASMTL-AS1 | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ASMTL-AS1 | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat ASMTL-AS1 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat ASMTL-AS1 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat ASMTL-AS1 |
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 | | | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ASMTL-AS1 |
|  |  |  | | | | | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat ASMTL-AS1 |
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