Free for academic non-profit institutions. Other users need a Commercial license

Aliases for ASB5 Gene

Aliases for ASB5 Gene

  • Ankyrin Repeat And SOCS Box Containing 5 2 3
  • Ankyrin Repeat And SOCS Box-Containing 5 2 3
  • ASB-5 3 4
  • Ankyrin Repeat And SOCS Box Protein 5 3
  • SOCS Box Protein ASB-5 3

External Ids for ASB5 Gene

Summaries for ASB5 Gene

Entrez Gene Summary for ASB5 Gene

  • The protein encoded by this gene is a member of the ankyrin repeat and SOCS box-containing (ASB) family of proteins. They contain ankyrin repeat sequence and SOCS box domain. The SOCS box serves to couple suppressor of cytokine signalling (SOCS) proteins and their binding partners with the elongin B and C complex, possibly targeting them for degradation. Multiple alternatively spliced transcript variants have been described for this gene but their full length sequences are not known. [provided by RefSeq, Jul 2008]

GeneCards Summary for ASB5 Gene

ASB5 (Ankyrin Repeat And SOCS Box Containing 5) is a Protein Coding gene. Among its related pathways are Class I MHC mediated antigen processing and presentation and Class I MHC mediated antigen processing and presentation. An important paralog of this gene is ASB11.

UniProtKB/Swiss-Prot for ASB5 Gene

  • May be a substrate-recognition component of a SCF-like ECS (Elongin-Cullin-SOCS-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. May play a role in the initiation of arteriogenesis (By similarity).

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ASB5 Gene

Genomics for ASB5 Gene

Genomic Location for ASB5 Gene

Start:
176,213,673 bp from pter
End:
176,277,571 bp from pter
Size:
63,899 bases
Orientation:
Minus strand

Genomic View for ASB5 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ASB5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ASB5 Gene

Regulatory Elements for ASB5 Gene

Proteins for ASB5 Gene

  • Protein details for ASB5 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8WWX0-ASB5_HUMAN
    Recommended name:
    Ankyrin repeat and SOCS box protein 5
    Protein Accession:
    Q8WWX0
    Secondary Accessions:
    • Q8N7B5

    Protein attributes for ASB5 Gene

    Size:
    329 amino acids
    Molecular mass:
    36341 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for ASB5 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ASB5 Gene

Proteomics data for ASB5 Gene at MOPED

Post-translational modifications for ASB5 Gene

No Post-translational modifications

Other Protein References for ASB5 Gene

ENSEMBL proteins:
Reactome Protein details:
REFSEQ proteins:

No data available for DME Specific Peptides for ASB5 Gene

Domains for ASB5 Gene

Gene Families for ASB5 Gene

HGNC:
  • ANKRD :Ankyrin repeat domain containing

Protein Domains for ASB5 Gene

Suggested Antigen Peptide Sequences for ASB5 Gene

Graphical View of Domain Structure for InterPro Entry

Q8WWX0

UniProtKB/Swiss-Prot:

ASB5_HUMAN
Domain:
  • The SOCS box domain mediates the interaction with the Elongin BC complex, an adapter module in different E3 ubiquitin-protein ligase complexes.:
    • Q8WWX0
  • Contains 1 SOCS box domain.:
    • Q8WWX0
Family:
  • Belongs to the ankyrin SOCS box (ASB) family.:
    • Q8WWX0
Similarity:
  • Contains 6 ANK repeats.:
    • Q8WWX0
genes like me logo Genes that share domains with ASB5: view

Function for ASB5 Gene

Molecular function for ASB5 Gene

UniProtKB/Swiss-Prot Function: May be a substrate-recognition component of a SCF-like ECS (Elongin-Cullin-SOCS-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. May play a role in the initiation of arteriogenesis (By similarity).

Gene Ontology (GO) - Molecular Function for ASB5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with ASB5: view

Phenotypes for ASB5 Gene

genes like me logo Genes that share phenotypes with ASB5: view

No data available for Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for ASB5 Gene

Localization for ASB5 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ASB5 Gene COMPARTMENTS Subcellular localization image for ASB5 gene
Compartment Confidence
cytosol 3
cytoskeleton 1
endoplasmic reticulum 1
extracellular 1
mitochondrion 1
peroxisome 1
plasma membrane 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for ASB5 Gene

Pathways for ASB5 Gene

genes like me logo Genes that share pathways with ASB5: view

UniProtKB/Swiss-Prot Q8WWX0-ASB5_HUMAN

  • Pathway: Protein modification; protein ubiquitination

Gene Ontology (GO) - Biological Process for ASB5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016567 protein ubiquitination IEA --
GO:0035556 intracellular signal transduction IEA --
genes like me logo Genes that share ontologies with ASB5: view

Transcripts for ASB5 Gene

mRNA/cDNA for ASB5 Gene

(4) REFSEQ mRNAs :
(5) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ASB5 Gene

Ankyrin repeat and SOCS box containing 5:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ASB5 Gene

No ASD Table

Relevant External Links for ASB5 Gene

GeneLoc Exon Structure for
ASB5
ECgene alternative splicing isoforms for
ASB5

Expression for ASB5 Gene

mRNA expression in normal human tissues for ASB5 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for ASB5 Gene

This gene is overexpressed in Muscle - Skeletal (35.4).

SOURCE GeneReport for Unigene cluster for ASB5 Gene Hs.591712

genes like me logo Genes that share expressions with ASB5: view

No data available for Protein expression and mRNA Expression by UniProt/SwissProt for ASB5 Gene

Orthologs for ASB5 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ASB5 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ASB5 35
  • 99.8 (n)
  • 100 (a)
ASB5 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia ASB5 35
  • 87.23 (n)
  • 93.01 (a)
ASB5 36
  • 93 (a)
OneToOne
dog
(Canis familiaris)
Mammalia ASB5 35
  • 87.23 (n)
  • 93.31 (a)
ASB5 36
  • 81 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Asb5 35
  • 87.44 (n)
  • 93.62 (a)
Asb5 16
Asb5 36
  • 94 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia ASB5 36
  • 88 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia ASB5 36
  • 72 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Asb5 35
  • 86.31 (n)
  • 91.72 (a)
chicken
(Gallus gallus)
Aves ASB5 35
  • 79.53 (n)
  • 84.8 (a)
ASB5 36
  • 85 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia ASB5 36
  • 64 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia Str.13670 35
zebrafish
(Danio rerio)
Actinopterygii ASB5 (3 of 3) 36
  • 64 (a)
OneToMany
asb5b 35
  • 66.26 (n)
  • 71.65 (a)
asb5b 36
  • 72 (a)
OneToMany
Dr.15216 35
spata4 36
  • 64 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea CSA.4234 36
  • 35 (a)
OneToMany
Species with no ortholog for ASB5:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ASB5 Gene

ENSEMBL:
Gene Tree for ASB5 (if available)
TreeFam:
Gene Tree for ASB5 (if available)

Paralogs for ASB5 Gene

Paralogs for ASB5 Gene

Selected SIMAP similar genes for ASB5 Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with ASB5: view

Variants for ASB5 Gene

Sequence variations from dbSNP and Humsavar for ASB5 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type MAF
rs768130 -- 176,247,604(+) CATGG(G/T)GTGAA intron-variant
rs922847 -- 176,234,412(+) tgact(G/T)tagtg intron-variant
rs922848 -- 176,234,583(+) CAGTT(A/G)ATTTC intron-variant
rs922849 -- 176,215,361(+) AAACA(A/G)GAGGG utr-variant-3-prime
rs988003 -- 176,269,704(+) TAACA(C/T)GGTTC upstream-variant-2KB, intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ASB5 Gene

Variant ID Type Subtype PubMed ID
esv2728772 CNV Deletion 23290073
esv34137 CNV Loss 18971310
esv1348309 CNV Insertion 17803354
nsv293663 CNV Loss 16902084
nsv4612 CNV Loss 18451855

Relevant External Links for ASB5 Gene

HapMap Linkage Disequilibrium report
ASB5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ASB5 Gene

Disorders for ASB5 Gene

Relevant External Links for ASB5

Genetic Association Database (GAD)
ASB5
Human Genome Epidemiology (HuGE) Navigator
ASB5
genes like me logo Genes that share disorders with ASB5: view

No data available for UniProtKB/Swiss-Prot for ASB5 Gene

Publications for ASB5 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 48
  4. Protein interaction screening for the ankyrin repeats and suppressor of cytokine signaling (SOCS) box (ASB) family identify Asb11 as a novel endoplasmic reticulum resident ubiquitin ligase. (PMID: 24337577) Andresen C.A. … Flores-Morales A. (J. Biol. Chem. 2014) 3
  5. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PMID: 15815621) Hillier L.W. … Wilson R.K. (Nature 2005) 4

Products for ASB5 Gene

Sources for ASB5 Gene

Back to Top

Content