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Aliases for ASB16-AS1 Gene

Subcategory (RNA class) for ASB16-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for ASB16-AS1 Gene

  • ASB16 Antisense RNA 1 2 3 4 5
  • C17orf65 3 4
  • Chromosome 17 Open Reading Frame 65 2
  • ASB16 Antisense Gene Protein 1 4
  • CTB-175E5.4 3

External Ids for ASB16-AS1 Gene

Previous HGNC Symbols for ASB16-AS1 Gene

  • C17orf65

Previous GeneCards Identifiers for ASB16-AS1 Gene

  • GC17M042254

Summaries for ASB16-AS1 Gene

GeneCards Summary for ASB16-AS1 Gene

ASB16-AS1 (ASB16 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ASB16-AS1 Gene

Genomics for ASB16-AS1 Gene

Regulatory Elements for ASB16-AS1 Gene

Enhancers for ASB16-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17G043322 1.7 Ensembl ENCODE dbSUPER 78.8 +863.6 863555 1.6 MLX ZFP64 YBX1 DMAP1 YY1 SLC30A9 ZNF416 ZNF143 ZNF548 ZNF263 ENSG00000267340 ENSG00000267002 ASB16-AS1 HMGN1P29 DHX8 NBR2 ENSG00000267765 HSD17B1 CCR10 LINC00910
GH17G045143 1.8 FANTOM5 ENCODE dbSUPER 47.9 -961.2 -961230 9.6 MLX CREB3L1 AGO1 FEZF1 DMAP1 YBX1 YY1 SLC30A9 ZNF143 ZNF548 ENSG00000262372 ASB16-AS1 ENSG00000224505 LINC02210 EFTUD2 ENSG00000260793 HEXIM1 DCAKD FMNL1 ENSG00000233175
GH17G043366 1.7 Ensembl ENCODE dbSUPER 37.9 +818.0 818003 4.0 ZFP64 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC TBX21 SSRP1 NBR2 DHX8 HMGN1P29 LINC00910 ASB16-AS1 ENSG00000267340 ENSG00000267002 PSME3 NBR1 MEOX1
GH17G044818 1.5 Ensembl ENCODE dbSUPER 35.7 -633.7 -633678 3.4 ARNT ZNF493 ZFP64 FEZF1 ZNF2 ZNF121 KLF7 FOS ZNF202 SP3 ASB16-AS1 GJC1 GPATCH8 ENSG00000260793 EFTUD2 HIGD1B GFAP C1QL1 LINC02210 MEIOC
GH17G044101 1.7 Ensembl ENCODE dbSUPER 28.8 +79.1 79063 12.5 CREB3L1 MLX ZFP64 DMAP1 YBX1 FEZF1 YY1 SLC30A9 ZNF143 ZNF263 ASB16-AS1 ASB16 NAGS G6PC3 HMGN1P29 LINC00910 C17orf53 DHX8 LSM12 RNU6-131P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ASB16-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for ASB16-AS1 Gene

Chromosome:
17
Start:
44,175,973 bp from pter
End:
44,186,717 bp from pter
Size:
10,745 bases
Orientation:
Minus strand

Genomic View for ASB16-AS1 Gene

Genes around ASB16-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ASB16-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ASB16-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ASB16-AS1 Gene

Proteins for ASB16-AS1 Gene

  • Protein details for ASB16-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q495Z4-ASAS1_HUMAN
    Recommended name:
    Putative uncharacterized protein ASB16-AS1
    Protein Accession:
    Q495Z4
    Secondary Accessions:
    • Q495Z5
    • Q495Z6

    Protein attributes for ASB16-AS1 Gene

    Size:
    193 amino acids
    Molecular mass:
    20099 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ASB16-AS1 Gene

Post-translational modifications for ASB16-AS1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for ASB16-AS1 Gene

Domains & Families for ASB16-AS1 Gene

Protein Domains for ASB16-AS1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ASB16-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ASB16-AS1 Gene

Function for ASB16-AS1 Gene

Phenotypes for ASB16-AS1 Gene

GenomeRNAi human phenotypes for ASB16-AS1:
genes like me logo Genes that share phenotypes with ASB16-AS1: view

Animal Model Products

miRNA for ASB16-AS1 Gene

miRTarBase miRNAs that target ASB16-AS1

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ASB16-AS1 Gene

Localization for ASB16-AS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ASB16-AS1 gene
Compartment Confidence
nucleus 2
cytosol 2
mitochondrion 1
peroxisome 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for ASB16-AS1 Gene

Pathways & Interactions for ASB16-AS1 Gene

SuperPathways for ASB16-AS1 Gene

No Data Available

Interacting Proteins for ASB16-AS1 Gene

Selected Interacting proteins: Q495Z4-ASAS1_HUMAN for ASB16-AS1 Gene via IID

Symbol External ID(s) Details
SHBG

Gene Ontology (GO) - Biological Process for ASB16-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ASB16-AS1 Gene

Transcripts for ASB16-AS1 Gene

Unigene Clusters for ASB16-AS1 Gene

ASB16 antisense RNA 1:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ASB16-AS1 Gene

No ASD Table

Relevant External Links for ASB16-AS1 Gene

GeneLoc Exon Structure for
ASB16-AS1
ECgene alternative splicing isoforms for
ASB16-AS1

Expression for ASB16-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ASB16-AS1 Gene

Protein differential expression in normal tissues from HIPED for ASB16-AS1 Gene

This gene is overexpressed in Breast (60.5) and Adipocyte (8.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for ASB16-AS1 Gene



Protein tissue co-expression partners for ASB16-AS1 Gene

- Elite partner

SOURCE GeneReport for Unigene cluster for ASB16-AS1 Gene:

Hs.656564
genes like me logo Genes that share expression patterns with ASB16-AS1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ASB16-AS1 Gene

Orthologs for ASB16-AS1 Gene

Evolution for ASB16-AS1 Gene

ENSEMBL:
Gene Tree for ASB16-AS1 (if available)
TreeFam:
Gene Tree for ASB16-AS1 (if available)

No data available for Orthologs for ASB16-AS1 Gene

Paralogs for ASB16-AS1 Gene

(1) SIMAP similar genes for ASB16-AS1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with ASB16-AS1: view

No data available for Paralogs for ASB16-AS1 Gene

Variants for ASB16-AS1 Gene

Sequence variations from dbSNP and Humsavar for ASB16-AS1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1000043239 -- 44,180,435(+) GAGAC(A/C)CTCTG intron-variant
rs1000075746 -- 44,179,609(+) CGCAC(C/T)GCTGT intron-variant
rs1000077907 -- 44,182,996(+) GGATC(A/G)CTTGA intron-variant, nc-transcript-variant
rs1000341675 -- 44,187,027(+) GATTG(C/T)CAGCC upstream-variant-2KB, utr-variant-5-prime
rs1000545036 -- 44,186,787(+) CCTAA(G/T)GCCCC upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for ASB16-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv529n67 CNV gain 20364138
nsv1134654 CNV deletion 24896259
nsv1146669 OTHER inversion 26484159
nsv833455 CNV loss 17160897

Relevant External Links for ASB16-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ASB16-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ASB16-AS1 Gene

Disorders for ASB16-AS1 Gene

Relevant External Links for ASB16-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ASB16-AS1

No disorders were found for ASB16-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ASB16-AS1 Gene

Publications for ASB16-AS1 Gene

  1. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A. … Hentze M.W. (Cell 2012) 3 64
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  3. Identification of intrahepatic cholangiocarcinoma related genes by comparison with normal liver tissues using expressed sequence tags. (PMID: 16712791) Wang A.G. … Kim N.S. (Biochem. Biophys. Res. Commun. 2006) 3 64
  4. DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage. (PMID: 16625196) Zody M.C. … Nusbaum C. (Nature 2006) 4 64
  5. Yeast two-hybrid identification of prostatic proteins interacting with human sex hormone-binding globulin. (PMID: 15862967) Pope S.N. … Lee I.R. (J. Steroid Biochem. Mol. Biol. 2005) 3 64

Products for ASB16-AS1 Gene

Sources for ASB16-AS1 Gene

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