Free for academic non-profit institutions. Other users need a Commercial license

Aliases for ASB16-AS1 Gene

Subcategory (RNA class) for ASB16-AS1 Gene

antisense

Quality Score for this RNA gene is

13

Aliases for ASB16-AS1 Gene

  • ASB16 Antisense RNA 1 2 3 4
  • C17orf65 3 4
  • Chromosome 17 Open Reading Frame 65 2
  • ASB16 Antisense Gene Protein 1 4
  • CTB-175E5.4 3

External Ids for ASB16-AS1 Gene

ORGUL Members for ASB16-AS1 Gene

Previous Symbols for ASB16-AS1 Gene

  • C17orf65

Summaries for ASB16-AS1 Gene

GeneCards Summary for ASB16-AS1 Gene

ASB16-AS1 (ASB16 Antisense RNA 1) is a RNA Gene, and belongs to antisense RNA class. Diseases associated with ASB16-AS1 include intrahepatic cholangiocarcinoma.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ASB16-AS1 Gene

Genomics for ASB16-AS1 Gene

Genomic Location for ASB16-AS1 Gene

Start:
44,175,973 bp from pter
End:
44,186,717 bp from pter
Size:
10,745 bases
Orientation:
Minus strand

Genomic View for ASB16-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ASB16-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ASB16-AS1 Gene

No data available for Regulatory Elements for ASB16-AS1 Gene

Proteins for ASB16-AS1 Gene

  • Protein details for ASB16-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q495Z4-ASAS1_HUMAN
    Recommended name:
    Putative uncharacterized protein ASB16-AS1
    Protein Accession:
    Q495Z4
    Secondary Accessions:
    • Q495Z5
    • Q495Z6

    Protein attributes for ASB16-AS1 Gene

    Size:
    193 amino acids
    Molecular mass:
    20099 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ASB16-AS1 Gene

Proteomics data for ASB16-AS1 Gene at MOPED

Post-translational modifications for ASB16-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ASB16-AS1 Gene

Domains for ASB16-AS1 Gene

Gene Families for ASB16-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Protein Domains for ASB16-AS1 Gene

ProtoNet:
genes like me logo Genes that share domains with ASB16-AS1: view

No data available for UniProtKB/Swiss-Prot for ASB16-AS1 Gene

Function for ASB16-AS1 Gene

miRNA for ASB16-AS1 Gene

miRTarBase miRNAs that target ASB16-AS1

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for ASB16-AS1 Gene

Localization for ASB16-AS1 Gene

No data available for Gene Ontology (GO) - Cellular Components for ASB16-AS1 Gene

Pathways for ASB16-AS1 Gene

SuperPathways for ASB16-AS1 Gene

No Data Available

Interacting Proteins for ASB16-AS1 Gene

Selected Interacting proteins: Q495Z4-ASAS1_HUMAN for ASB16-AS1 Gene via I2D

Symbol External ID(s) Details
SHBG

Gene Ontology (GO) - Biological Process for ASB16-AS1 Gene

None

No data available for Pathways by source for ASB16-AS1 Gene

Transcripts for ASB16-AS1 Gene

Unigene Clusters for ASB16-AS1 Gene

ASB16 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ASB16-AS1 Gene

No ASD Table

Relevant External Links for ASB16-AS1 Gene

GeneLoc Exon Structure for
ASB16-AS1
ECgene alternative splicing isoforms for
ASB16-AS1

Expression for ASB16-AS1 Gene

mRNA expression in normal human tissues for ASB16-AS1 Gene

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for ASB16-AS1 Gene

SOURCE GeneReport for Unigene cluster for ASB16-AS1 Gene Hs.656564

genes like me logo Genes that share expressions with ASB16-AS1: view

Orthologs for ASB16-AS1 Gene

Evolution for ASB16-AS1 Gene

ENSEMBL:
Gene Tree for ASB16-AS1 (if available)
TreeFam:
Gene Tree for ASB16-AS1 (if available)

No data available for Orthologs for ASB16-AS1 Gene

Paralogs for ASB16-AS1 Gene

Selected SIMAP similar genes for ASB16-AS1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with ASB16-AS1: view

No data available for Paralogs for ASB16-AS1 Gene

Variants for ASB16-AS1 Gene

Sequence variations from dbSNP and Humsavar for ASB16-AS1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type MAF
rs721769 -- 44,184,220(-) CTCCA(A/C)CATGA intron-variant
rs757431 -- 44,179,766(-) TGGCC(A/G)GACGG intron-variant
rs3180912 -- 44,182,095(+) TCCTT(A/G)AACAG intron-variant
rs7214273 -- 44,183,921(+) TGGCA(A/C)ACACA intron-variant
rs8080390 -- 44,182,694(+) ccaca(C/T)tcaag intron-variant

Relevant External Links for ASB16-AS1 Gene

HapMap Linkage Disequilibrium report
ASB16-AS1

No data available for Structural Variations from Database of Genomic Variants (DGV) for ASB16-AS1 Gene

Disorders for ASB16-AS1 Gene

genes like me logo Genes that share disorders with ASB16-AS1: view

No data available for UniProtKB/Swiss-Prot for ASB16-AS1 Gene

Publications for ASB16-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  3. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R. … Stanton L.W. (Nat. Biotechnol. 2004) 3
  4. Yeast two-hybrid identification of prostatic proteins interacting with human sex hormone-binding globulin. (PMID: 15862967) Pope S.N. … Lee I.R. (J. Steroid Biochem. Mol. Biol. 2005) 3
  5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3

Products for ASB16-AS1 Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate ASB16-AS1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for ASB16-AS1
    • Block miRNA regulation of ASB16-AS1 using miScript Target Protectors

    Sources for ASB16-AS1 Gene

    Back to Top

    Content