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Aliases for ASB16-AS1 Gene

Subcategory (RNA class) for ASB16-AS1 Gene

antisense

Quality Score for this RNA gene is

13

Aliases for ASB16-AS1 Gene

  • ASB16 Antisense RNA 1 2 3 4
  • C17orf65 3 4
  • Chromosome 17 Open Reading Frame 65 2
  • ASB16 Antisense Gene Protein 1 4
  • CTB-175E5.4 3

External Ids for ASB16-AS1 Gene

ORGUL Members for ASB16-AS1 Gene

Previous HGNC Symbols for ASB16-AS1 Gene

  • C17orf65

Previous GeneCards Identifiers for ASB16-AS1 Gene

  • GC17M042254

Summaries for ASB16-AS1 Gene

GeneCards Summary for ASB16-AS1 Gene

ASB16-AS1 (ASB16 Antisense RNA 1) is an RNA Gene, and is affiliated with the antisense RNA class. Diseases associated with ASB16-AS1 include intrahepatic cholangiocarcinoma.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ASB16-AS1 Gene

Genomics for ASB16-AS1 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for ASB16-AS1 Gene

Start:
44,175,973 bp from pter
End:
44,186,717 bp from pter
Size:
10,745 bases
Orientation:
Minus strand

Genomic View for ASB16-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ASB16-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ASB16-AS1 Gene

No data available for Regulatory Elements for ASB16-AS1 Gene

Proteins for ASB16-AS1 Gene

  • Protein details for ASB16-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q495Z4-ASAS1_HUMAN
    Recommended name:
    Putative uncharacterized protein ASB16-AS1
    Protein Accession:
    Q495Z4
    Secondary Accessions:
    • Q495Z5
    • Q495Z6

    Protein attributes for ASB16-AS1 Gene

    Size:
    193 amino acids
    Molecular mass:
    20099 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ASB16-AS1 Gene

Proteomics data for ASB16-AS1 Gene at MOPED

Post-translational modifications for ASB16-AS1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for ASB16-AS1 Gene

Domains for ASB16-AS1 Gene

Gene Families for ASB16-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Protein Domains for ASB16-AS1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ASB16-AS1: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ASB16-AS1 Gene

Function for ASB16-AS1 Gene

miRNA for ASB16-AS1 Gene

miRTarBase miRNAs that target ASB16-AS1

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate ASB16-AS1
    • Block miRNA regulation of ASB16-AS1 using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for ASB16-AS1

    In Situ Assay Products

    Flow Cytometry Products

    No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for ASB16-AS1 Gene

    Localization for ASB16-AS1 Gene

    No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ASB16-AS1 Gene

    Pathways for ASB16-AS1 Gene

    SuperPathways for ASB16-AS1 Gene

    No Data Available

    Interacting Proteins for ASB16-AS1 Gene

    Selected Interacting proteins: Q495Z4-ASAS1_HUMAN for ASB16-AS1 Gene via I2D

    Symbol External ID(s) Details
    SHBG

    Gene Ontology (GO) - Biological Process for ASB16-AS1 Gene

    None

    No data available for Pathways by source for ASB16-AS1 Gene

    Transcripts for ASB16-AS1 Gene

    Unigene Clusters for ASB16-AS1 Gene

    ASB16 antisense RNA 1:
    Representative Sequences:

    miRNA Products

    • QIAGEN qRT-PCR Assays for microRNAs that regulate ASB16-AS1
      • Block miRNA regulation of ASB16-AS1 using miScript Target Protectors

      Inhibitory RNA Products

      • Predesigned siRNA for gene silencing in human,mouse,rat for ASB16-AS1

      Primer Products

      • QuantiTect SYBR Green Assays in human,mouse,rat
      • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
      • QuantiFast Probe-based Assays in human,mouse,rat

      Flow Cytometry Products

      Alternative Splicing Database (ASD) splice patterns (SP) for ASB16-AS1 Gene

      No ASD Table

      Relevant External Links for ASB16-AS1 Gene

      GeneLoc Exon Structure for
      ASB16-AS1
      ECgene alternative splicing isoforms for
      ASB16-AS1

      Expression for ASB16-AS1 Gene

      mRNA expression in normal human tissues for ASB16-AS1 Gene

      Protein differential expression in normal tissues for ASB16-AS1 Gene

      This gene is overexpressed in Breast (60.5) and Adipocyte (8.5).

      Integrated Proteomics: protein expression from ProteomicsDB and MOPED for ASB16-AS1 Gene

      SOURCE GeneReport for Unigene cluster for ASB16-AS1 Gene Hs.656564

      genes like me logo Genes that share expressions with ASB16-AS1: view

      Expression partners for ASB16-AS1 Gene

      In Situ Assay Products

      No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for ASB16-AS1 Gene

      Orthologs for ASB16-AS1 Gene

      Evolution for ASB16-AS1 Gene

      ENSEMBL:
      Gene Tree for ASB16-AS1 (if available)
      TreeFam:
      Gene Tree for ASB16-AS1 (if available)

      No data available for Orthologs for ASB16-AS1 Gene

      Paralogs for ASB16-AS1 Gene

      Selected SIMAP similar genes for ASB16-AS1 Gene using alignment to 1 proteins:

      genes like me logo Genes that share paralogs with ASB16-AS1: view

      No data available for Paralogs for ASB16-AS1 Gene

      Variants for ASB16-AS1 Gene

      Sequence variations from dbSNP and Humsavar for ASB16-AS1 Gene

      SNP ID Clin Chr 17 pos Sequence Context AA Info Type MAF
      rs721769 -- 44,184,220(-) CTCCA(A/C)CATGA intron-variant
      rs757431 -- 44,179,766(-) TGGCC(A/G)GACGG intron-variant
      rs3180912 -- 44,182,095(+) TCCTT(A/G)AACAG intron-variant
      rs7214273 -- 44,183,921(+) TGGCA(A/C)ACACA intron-variant
      rs8080390 -- 44,182,694(+) ccaca(C/T)tcaag intron-variant

      Relevant External Links for ASB16-AS1 Gene

      HapMap Linkage Disequilibrium report
      ASB16-AS1

      No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for ASB16-AS1 Gene

      Disorders for ASB16-AS1 Gene

      MalaCards: The human disease database

      MalaCards: The human disease database.

      Search for ASB16-AS1 Gene in MalaCards »

      (1) Diseases for ASB16-AS1 Gene including...

      genes like me logo Genes that share disorders with ASB16-AS1: view

      No data available for OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for ASB16-AS1 Gene

      Publications for ASB16-AS1 Gene

      1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
      2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
      3. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R. … Stanton L.W. (Nat. Biotechnol. 2004) 3
      4. Yeast two-hybrid identification of prostatic proteins interacting with human sex hormone-binding globulin. (PMID: 15862967) Pope S.N. … Lee I.R. (J. Steroid Biochem. Mol. Biol. 2005) 3
      5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3

      Products for ASB16-AS1 Gene

      • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
      • QIAGEN qRT-PCR Assays for microRNAs that regulate ASB16-AS1
        • QuantiTect SYBR Green Assays in human,mouse,rat
        • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
        • QuantiFast Probe-based Assays in human,mouse,rat
        • Predesigned siRNA for gene silencing in human,mouse,rat for ASB16-AS1
        • Block miRNA regulation of ASB16-AS1 using miScript Target Protectors

        Sources for ASB16-AS1 Gene

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