Free for academic non-profit institutions. Other users need a Commercial license

Aliases for ASB16 Gene

Aliases for ASB16 Gene

  • Ankyrin Repeat And SOCS Box Containing 16 2 3
  • Ankyrin Repeat And SOCS Box-Containing 16 2
  • ASB-16 4

External Ids for ASB16 Gene

Previous GeneCards Identifiers for ASB16 Gene

  • GC17M041995
  • GC17P044425
  • GC17P042258
  • GC17P042723
  • GC17P039603
  • GC17P038012
  • GC17P042247

Summaries for ASB16 Gene

Entrez Gene Summary for ASB16 Gene

  • The protein encoded by this gene is a member of the ankyrin repeat and SOCS box-containing (ASB) family of proteins. They contain ankyrin repeat sequence and a SOCS box domain. The SOCS box serves to couple suppressor of cytokine signalling (SOCS) proteins and their binding partners with the elongin B and C complex, possibly targeting them for degradation. [provided by RefSeq, Jul 2008]

GeneCards Summary for ASB16 Gene

ASB16 (Ankyrin Repeat And SOCS Box Containing 16) is a Protein Coding gene. Among its related pathways are Class I MHC mediated antigen processing and presentation and Class I MHC mediated antigen processing and presentation. An important paralog of this gene is ASB10.

UniProtKB/Swiss-Prot for ASB16 Gene

  • May be a substrate-recognition component of a SCF-like ECS (Elongin-Cullin-SOCS-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ASB16 Gene

Genomics for ASB16 Gene

Regulatory Elements for ASB16 Gene

Genomic Location for ASB16 Gene

Start:
44,170,447 bp from pter
End:
44,179,083 bp from pter
Size:
8,637 bases
Orientation:
Plus strand

Genomic View for ASB16 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ASB16 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ASB16 Gene

Proteins for ASB16 Gene

  • Protein details for ASB16 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96NS5-ASB16_HUMAN
    Recommended name:
    Ankyrin repeat and SOCS box protein 16
    Protein Accession:
    Q96NS5
    Secondary Accessions:
    • B2RBC0
    • Q8WXK0

    Protein attributes for ASB16 Gene

    Size:
    453 amino acids
    Molecular mass:
    49637 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ASB16 Gene

Proteomics data for ASB16 Gene at MOPED

Post-translational modifications for ASB16 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ASB16 Gene

ENSEMBL proteins:
Reactome Protein details:
REFSEQ proteins:

No data available for DME Specific Peptides for ASB16 Gene

Domains for ASB16 Gene

Gene Families for ASB16 Gene

HGNC:
  • ANKRD :Ankyrin repeat domain containing

Protein Domains for ASB16 Gene

Graphical View of Domain Structure for InterPro Entry

Q96NS5

UniProtKB/Swiss-Prot:

ASB16_HUMAN :
  • Q96NS5
Domain:
  • The SOCS box domain mediates the interaction with the Elongin BC complex, an adapter module in different E3 ubiquitin-protein ligase complexes.
  • Contains 1 SOCS box domain.
Family:
  • Belongs to the ankyrin SOCS box (ASB) family.
Similarity:
  • Contains 7 ANK repeats.
genes like me logo Genes that share domains with ASB16: view

Function for ASB16 Gene

Molecular function for ASB16 Gene

UniProtKB/Swiss-Prot Function: May be a substrate-recognition component of a SCF-like ECS (Elongin-Cullin-SOCS-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.

Gene Ontology (GO) - Molecular Function for ASB16 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 17474147
genes like me logo Genes that share ontologies with ASB16: view

Phenotypes for ASB16 Gene

GenomeRNAi human phenotypes for ASB16:
genes like me logo Genes that share phenotypes with ASB16: view

Animal Model Products

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ASB16

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for ASB16 Gene

Localization for ASB16 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ASB16 Gene COMPARTMENTS Subcellular localization image for ASB16 gene
Compartment Confidence
cytosol 3
mitochondrion 2
nucleus 1
peroxisome 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for ASB16 Gene

Pathways for ASB16 Gene

genes like me logo Genes that share pathways with ASB16: view

UniProtKB/Swiss-Prot Q96NS5-ASB16_HUMAN

  • Pathway: Protein modification; protein ubiquitination

Gene Ontology (GO) - Biological Process for ASB16 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016567 protein ubiquitination IEA --
GO:0035556 intracellular signal transduction IEA --
genes like me logo Genes that share ontologies with ASB16: view

Transcripts for ASB16 Gene

mRNA/cDNA for ASB16 Gene

(11) Selected AceView cDNA sequences:
(7) Additional mRNA sequences :
(1) REFSEQ mRNAs :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ASB16 Gene

Ankyrin repeat and SOCS box containing 16:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ASB16

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for ASB16

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ASB16 Gene

ExUns: 1 ^ 2a · 2b · 2c ^ 3a · 3b ^ 4a · 4b ^ 5 ^ 6a · 6b
SP1:
SP2: -
SP3: - -

Relevant External Links for ASB16 Gene

GeneLoc Exon Structure for
ASB16
ECgene alternative splicing isoforms for
ASB16

Expression for ASB16 Gene

mRNA expression in normal human tissues for ASB16 Gene

mRNA differential expression in normal tissues according to GTEx for ASB16 Gene

This gene is overexpressed in Muscle - Skeletal (12.4).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for ASB16 Gene

SOURCE GeneReport for Unigene cluster for ASB16 Gene Hs.534517

genes like me logo Genes that share expressions with ASB16: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for ASB16 Gene

Orthologs for ASB16 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ASB16 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ASB16 35
  • 99.04 (n)
  • 98.45 (a)
ASB16 36
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia ASB16 35
  • 86.98 (n)
  • 88.52 (a)
ASB16 36
  • 89 (a)
OneToOne
dog
(Canis familiaris)
Mammalia ASB16 35
  • 86.83 (n)
  • 88.96 (a)
ASB16 36
  • 89 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Asb16 35
  • 82.86 (n)
  • 85.21 (a)
Asb16 16
Asb16 36
  • 85 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia ASB16 36
  • 73 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Asb16 35
  • 83.52 (n)
  • 84.99 (a)
lizard
(Anolis carolinensis)
Reptilia ASB16 36
  • 54 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia asb16 35
  • 54.82 (n)
  • 48.12 (a)
zebrafish
(Danio rerio)
Actinopterygii asb16 35
  • 55.39 (n)
  • 47.37 (a)
asb16 36
  • 46 (a)
OneToOne
Species with no ortholog for ASB16:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ASB16 Gene

ENSEMBL:
Gene Tree for ASB16 (if available)
TreeFam:
Gene Tree for ASB16 (if available)

Paralogs for ASB16 Gene

Paralogs for ASB16 Gene

Selected SIMAP similar genes for ASB16 Gene using alignment to 5 proteins:

genes like me logo Genes that share paralogs with ASB16: view

Variants for ASB16 Gene

Sequence variations from dbSNP and Humsavar for ASB16 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type MAF
rs6503488 -- 44,168,790(+) GAAGG(G/T)gctgg upstream-variant-2KB
rs6503489 -- 44,168,921(+) aaatc(A/G)gccgg upstream-variant-2KB
rs6503490 -- 44,169,288(+) caggc(A/G)gctaa upstream-variant-2KB
rs7213326 -- 44,169,505(+) TTTTt(C/T)ttctt upstream-variant-2KB
rs7213436 -- 44,174,795(+) CTTTG(A/G)AGTGT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ASB16 Gene

Variant ID Type Subtype PubMed ID
nsv833455 CNV Loss 17160897
nsv908269 CNV Loss 21882294
nsv908270 CNV Loss 21882294
nsv908271 CNV Loss 21882294
dgv529n67 CNV Gain 20364138

Relevant External Links for ASB16 Gene

HapMap Linkage Disequilibrium report
ASB16

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ASB16 Gene

Disorders for ASB16 Gene

Relevant External Links for ASB16

Genetic Association Database (GAD)
ASB16
Human Genome Epidemiology (HuGE) Navigator
ASB16
genes like me logo Genes that share disorders with ASB16: view

No data available for UniProtKB/Swiss-Prot for ASB16 Gene

Publications for ASB16 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 48
  4. The SOCS box: a tale of destruction and degradation. (PMID: 12076535) Kile B.T. … Hilton D.J. (Trends Biochem. Sci. 2002) 2 3
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for ASB16 Gene

Sources for ASB16 Gene

Back to Top

Content