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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

ASB15 Gene

protein-coding   GIFtS: 48
GCID: GC07P123207

ankyrin repeat and SOCS box containing 15

(Previous name: ankyrin repeat and SOCS box-containing 15 )
  Search for ASB15
in our new
 Human Malady Compendium 
Biological research products
for ASB15
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Ankyrin Repeat And SOCS Box Containing 151 2
Ankyrin Repeat And SOCS Box-Containing 151 2
ASB-152 3
FLJ433701
Ankyrin Repeat And SOCS Box Protein 152

External Ids:    HGNC: 197671   Entrez Gene: 1426852   Ensembl: ENSG000001468097   UniProtKB: Q8WXK13   

Export aliases for ASB15 gene to outside databases

Previous GC identifers: GC07P121742 GC07P122805 GC07P122809 GC07P122803 GC07P122835 GC07P123036 GC07P117612


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: ASB15_HUMAN, Q8WXK1
Function: May be a substrate-recognition component of a SCF-like ECS (Elongin-Cullin-SOCS-box protein) E3
ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target
proteins (By similarity)




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000007.13  NC_018918.1  NT_007933.15  NT_079596.2  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the ASB15 gene promoter:
         Max1   TBP   HNF-3beta   C/EBPalpha   MEF-2A   S8   COMP1   aMEF-2   RSRFC4   c-Myc   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmids (see all 3): ASB15 promoter sequence
   Search SABiosciences Chromatin IP Primers for ASB15

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ASB15


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 7q31.31   Ensembl cytogenetic band:  7q31.32   HGNC cytogenetic band: 7q31.31

ASB15 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ASB15 gene location

GeneLoc information about chromosome 7         GeneLoc Exon Structure

GeneLoc location for GC07P123207:  view genomic region     (about GC identifiers)

Start:
123,207,064 bp from pter      End:
123,277,951 bp from pter
Size:
70,888 bases      Orientation:
plus strand

1 alternative location:
Chr7+,CRA_TCAG 122,637,747-122,666,569     

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: ASB15_HUMAN, Q8WXK1 (See protein sequence)
Recommended Name: Ankyrin repeat and SOCS box protein 15  
Size: 588 amino acids; 65799 Da
Secondary accessions: Q3ZCP3 Q3ZCP5 Q68D37

Explore the universe of human proteins at neXtProt for ASB15: NX_Q8WXK1

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q8WXK1

  • ASB15 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins: NP_563616.3  
    ENSEMBL proteins: 
     ENSP00000397655   ENSP00000390963   ENSP00000406163   ENSP00000416433   ENSP00000401166  
     ENSP00000438643   ENSP00000275699  
    Reactome Protein details: Q8WXK1
    Human Recombinant Protein Products: 
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    Browse ProSpec Recombinant Proteins
    Uscn Proteins for ASB15

    Gene Ontology (GO): 1 cellular component term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005622intracellular ----


    ASB15 for ontologies           About GeneDecksing



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    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    ASB15 for domains           About GeneDecksing

    3 InterPro domains/families:
     IPR001496 SOCS_C
     IPR020683 Ankyrin_rpt-contain_dom
     IPR002110 Ankyrin_rpt

    Graphical View of Domain Structure for InterPro Entry Q8WXK1

    ProtoNet protein and cluster: Q8WXK1

    2 Blocks protein families:
    IPB001496 SOCS protein
    IPB002110 Ankyrin repeat signature


    UniProtKB/Swiss-Prot: ASB15_HUMAN, Q8WXK1
    Domain: The SOCS box domain mediates the interaction with the Elongin BC complex, an adapter module in different E3
    ubiquitin-protein ligase complexes (By similarity)
    Similarity: Contains 9 ANK repeats
    Similarity: Contains 1 SOCS box domain


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Function Summary:

         UniProtKB/Swiss-Prot: ASB15_HUMAN, Q8WXK1
    Function: May be a substrate-recognition component of a SCF-like ECS (Elongin-Cullin-SOCS-box protein) E3
    ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target
    proteins (By similarity)

    miRNA
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    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat ASB15
    6 QIAGEN miScript miRNA Assays for microRNAs that regulate ASB15:
    hsa-miR-1321 hsa-miR-23b hsa-miR-130a* hsa-miR-23a hsa-miR-23c hsa-miR-3162-5p
    SwitchGear 3'UTR luciferase reporter plasmidASB15 3' UTR sequence
    Inhib. RNA
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ASB15

    1 GenomeRNAi human phenotype for ASB15:
     Decreased viability with pacli 


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways  About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1Antigen processing: Ubiquitination & Proteasome degradation
    Antigen processing: Ubiquitination & Proteasome degradation1.00
    Polyubiquitination of substrate0.75
    Class I MHC mediated antigen processing & presentation0.83
    2Immune System
    Immune System1.00
    Adaptive Immune System0.59

    Pathway sources
    See GeneCards unified pathways
    Show all pathways


    5        Reactome Pathways for ASB15
        Antigen processing: Ubiquitination & Proteasome degradation
    Polyubiquitination of substrate
    Adaptive Immune System
    Class I MHC mediated antigen processing & presentation
    Immune System


    UniProtKB/Swiss-Prot: ASB15_HUMAN, Q8WXK1
    Pathway: Protein modification; protein ubiquitination


    ASB15 for pathways           About GeneDecksing

    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for ASB15

    Gene Ontology (GO): 2 biological process terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0016567protein ubiquitination IEA--
    GO:0035556intracellular signal transduction IEA--


    ASB15 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for ASB15
    Search CenterWatch for drugs/clinical trials and news about ASB15 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for ASB15 gene: 
    NM_080928.3  

    Unigene Cluster for ASB15:

    Ankyrin repeat and SOCS box containing 15
    Hs.83916  [show with all ESTs]
    Unigene Representative Sequence: AK125360
    7 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000451558(uc003vkv.1) ENST00000434204 ENST00000437535 ENST00000451215(uc003vku.1)
    ENST00000447789 ENST00000540573 ENST00000275699(uc003vkw.1)

    miRNA
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    hsa-miR-1321 hsa-miR-23b hsa-miR-130a* hsa-miR-23a hsa-miR-23c hsa-miR-3162-5p
    SwitchGear 3'UTR luciferase reporter plasmidASB15 3' UTR sequence
    Inhib. RNA
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      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat ASB15
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat ASB15

    Additional cDNA sequence: 

    AF403033.1 AF428257.1 AK125360.1 BC100874.2 BC100875.2 BC100876.1 BC100877.2 CR749595.1 

    3 DOTS entries:

    DT.97817003  DT.121079771  DT.121079733 

    5 AceView cDNA sequences:

    AF428257 AF403033 NM_080928 CR749595 AK125360 

    GeneLoc Exon Structure

    5/6 Alternative Splicing Database (ASD) splice patterns (SP) for ASB15 (see all 6)    About this scheme

    ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5a · 5b ^ 6 ^ 7a · 7b ^ 8 ^ 9a · 9b ^ 10 ^ 11 ^ 12 ^ 13 ^ 14a · 14b ^ 15 ^ 16
    SP1:              -                 -     -     -                                                                                 
    SP2:                                            -                                                                                 
    SP3:                                                                                                                              
    SP4:                                -     -     -                                                                                 
    SP5:              -           -     -     -     -                                                                                 


    ECgene alternative splicing isoforms for ASB15

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    ASB15 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: GTGACATCTT

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image

    ASB15 expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table
    2 LifeMap In Vivo Development Anatomical Compartments/Cells 
    Tissue Anatomical Compartment CellCategory (developmental path)
    KidneyPodocyte LayerPodocytesKidney
    HeartLeft VentricleHeart
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization

    See ASB15 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for ASB15

    SOURCE GeneReport for Unigene cluster: Hs.83916
        SABiosciences Custom PCR Arrays for ASB15
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ASB15

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of eukaryotes.

    Orthologs for ASB15 gene from 7/20 species (see all 20)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    chicken
    (Gallus gallus)
    Aves ASB151 ankyrin repeat and SOCS box containing 15 74.91(n)
    76.11(a)
      417752  XM_415996.2  XP_415996.2 
    lizard
    (Anolis carolinensis)
    Reptilia ASB156
    --
    75(a)
    1 ↔ 1
    5(67476484-67490020)
    zebrafish
    (Danio rerio)
    Actinopterygii asb15b1 ankyrin repeat and SOCS box containing 15b 57.52(n)
    55.38(a)
      568579  NM_001039890.1  NP_001034979.1 
    honey bee
    (Apis mellifera)
    Insecta --
    --
    --
    22(a)
    19(a)
    possible ortholog
    possible ortholog
    GroupUn.2402(3656-4465)
    GroupUn.141(13787-29536)
    worm
    (Caenorhabditis elegans)
    Secernentea M60.76
    Protein M60.7
    16(a)
    possible ortholog
    X(8258435-8261124)
    thale cress
    (Arabidopsis thaliana)
    eudicotyledons TPR106
    ankyrin repeat family protein
    11(a)
    1 → many
    3(1276668-1281118)
    rice
    (Oryza sativa)
    Liliopsida --
    --
    (see all 30)
    ankyrin, putative, expressed
    (see all 30)
    19(a)
    19(a)
    (see all 30)
    many ↔ many
    many ↔ many
    (see all 30)
    2(17223153-17227085)
    2(17271383-17284330)


    ENSEMBL Gene Tree for ASB15 (if available)
    TreeFam Gene Tree for ASB15 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for ASB15 gene
    ASB32  ASB22  ASB142  
    3 SIMAP similar genes for ASB15 using alignment to 2 protein entries:     ASB15_HUMAN (see all proteins):
    ASB14    ASB2    ANKDD1A

    ASB15 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/563 NCBI SNPs in ASB15 are shown (see all 563    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 7 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1908470951,2
    --123247190(+) ATGTCA/GAATTA 1 -- us2k10--------
    rs1385436491,2
    --123247392(+) TATTCC/TATTTT 1 -- us2k10--------
    rs1418311211,2
    --123247438(+) TTTGGA/GACATT 1 -- us2k10--------
    rs771196631,2
    C,F,--123247450(+) ATGTTG/TTTTCT 1 -- us2k11Minor allele frequency- T:0.11WA 118
    rs1498627401,2
    C,--123247599(+) GAAGT-/GGCATG 1 -- us2k10--------
    rs1164577931,2
    C,F,--123247692(+) CCTACC/TACCAC 1 -- us2k11Minor allele frequency- T:0.11WA 118
    rs801503661,2
    F,--123247855(+) GACATA/GGAATT 1 -- us2k11Minor allele frequency- G:0.03NA 120
    rs802681921,2
    C,F,--123248090(+) TGTTAT/CAATTA 1 -- us2k11Minor allele frequency- C:0.11WA 118
    rs734393431,2
    C,--123248187(+) CTCATA/GCTAAT 1 -- us2k12Minor allele frequency- G:0.06WA 120
    rs1437493321,2
    C,--123248231(+) CTGGA-/GATAAA 1 -- us2k10--------

    HapMap Linkage Disequilibrium report for ASB15 (123207064 - 123277951 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
          Database of Genomic Variants (DGV) variations for ASB15: --

    SABiosciences Cancer Mutation PCR Assays
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing ASB15
    DNA2.0 Custom Variant and Variant Library Synthesis for ASB15

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for ASB15 gene integrated from 9 sources:
    (articles sorted by number of sources associating them with ASB15)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    2. The SOCS box: a tale of destruction and degradation. (PubMed id 12076535)1, 3 Kile B.T....Hilton D.J. (2002)
    3. Identification and characterization of ankyrin repeat and SOCS box-containing gene ASB15 in silico. (PubMed id 16012773)1, 9 Yoshida K. (2005)
    4. Violating the splicing rules: TG dinucleotides function as alternative 3' splice sites in U2-dependent introns. (PubMed id 17672918)1 Szafranski K....Platzer M. (2007)
    5. The full-ORF clone resource of the German cDNA consortium. (PubMed id 17974005)2 Bechtel S.... Schupp I. (2007)
    6. ASB proteins interact with cullin5 and Rbx2 to form E3 ubiquitin ligase complexes. (PubMed id 16325183)1 Kohroki J.... Masuho Y. (2005)
    7. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S....Malek J. (2004)
    8. The DNA sequence of human chromosome 7. (PubMed id 12853948)2 Hillier L.W.... Wilson R.K. (2003)
    9. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)

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    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 142685 HGNC: 19767 AceView: ASB15 Ensembl:ENSG00000146809 euGenes: HUgn142685
    ECgene: ASB15 H-InvDB: ASB15

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
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    About This Section
    NameDescription
    PharmGKB entry for ASB15 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for ASB15 gene:
    Search GeneIP for patents involving ASB15

    GeneCards and IP:
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