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Aliases for ASAP1-IT2 Gene

Subcategory (RNA class) for ASAP1-IT2 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for ASAP1-IT2 Gene

  • ASAP1 Intronic Transcript 2 2 3 5
  • ASAP1 Intronic Transcript 2 (Non-Protein Coding) 2

External Ids for ASAP1-IT2 Gene

ORGUL Members for ASAP1-IT2 Gene

Previous GeneCards Identifiers for ASAP1-IT2 Gene

  • GC08M131097

Summaries for ASAP1-IT2 Gene

GeneCards Summary for ASAP1-IT2 Gene

ASAP1-IT2 (ASAP1 Intronic Transcript 2) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ASAP1-IT2 Gene

Genomics for ASAP1-IT2 Gene

Regulatory Elements for ASAP1-IT2 Gene

Enhancers for ASAP1-IT2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08G130079 0.9 ENCODE dbSUPER 0.7 +4.7 4656 1.1 MTA2 BHLHE40 CBFB JUNB EBF1 DPF2 EP300 RELA IKZF1 EED ASAP1-IT2 GC08P130073
GH08G130094 1.2 Ensembl ENCODE dbSUPER 0.4 -10.3 -10275 0.5 SIX4 CTCF FOXA2 RAD21 YY1 RFX5 SMC3 DEK RFX1 ZNF654 FAM49B RNU6-1255P ASAP1-IT2 ENSG00000212342
GH08G130096 1.2 Ensembl ENCODE dbSUPER 0.4 -12.6 -12594 3.5 MXI1 L3MBTL2 NFIB JUN BHLHE40 MAX SIN3A MNT EP300 JUND FAM49B RNU6-1255P RNU7-181P ASAP1 ASAP1-IT2 ENSG00000212342
GH08G130085 0.6 ENCODE dbSUPER 0.7 -1.2 -1163 0.9 ZIC2 FAM49B ASAP1 ASAP1-IT2 ENSG00000212342
GH08G130101 1 FANTOM5 ENCODE dbSUPER 0.4 -17.2 -17222 0.4 ZNF512 NRF1 ATF2 RNU7-181P ASAP1-IT2 ENSG00000212342
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ASAP1-IT2 on UCSC Golden Path with GeneCards custom track

Genomic Location for ASAP1-IT2 Gene

Chromosome:
8
Start:
130,082,738 bp from pter
End:
130,084,768 bp from pter
Size:
2,031 bases
Orientation:
Minus strand

Genomic View for ASAP1-IT2 Gene

Genes around ASAP1-IT2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ASAP1-IT2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ASAP1-IT2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ASAP1-IT2 Gene

Proteins for ASAP1-IT2 Gene

Post-translational modifications for ASAP1-IT2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ASAP1-IT2 Gene

Domains & Families for ASAP1-IT2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ASAP1-IT2 Gene

Function for ASAP1-IT2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ASAP1-IT2 Gene

Localization for ASAP1-IT2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ASAP1-IT2 Gene

Pathways & Interactions for ASAP1-IT2 Gene

SuperPathways for ASAP1-IT2 Gene

No Data Available

Interacting Proteins for ASAP1-IT2 Gene

Gene Ontology (GO) - Biological Process for ASAP1-IT2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ASAP1-IT2 Gene

Drugs & Compounds for ASAP1-IT2 Gene

No Compound Related Data Available

Transcripts for ASAP1-IT2 Gene

mRNA/cDNA for ASAP1-IT2 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ASAP1-IT2 Gene

No ASD Table

Relevant External Links for ASAP1-IT2 Gene

GeneLoc Exon Structure for
ASAP1-IT2
ECgene alternative splicing isoforms for
ASAP1-IT2

Expression for ASAP1-IT2 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ASAP1-IT2 Gene

Orthologs for ASAP1-IT2 Gene

Evolution for ASAP1-IT2 Gene

ENSEMBL:
Gene Tree for ASAP1-IT2 (if available)
TreeFam:
Gene Tree for ASAP1-IT2 (if available)

No data available for Orthologs for ASAP1-IT2 Gene

Paralogs for ASAP1-IT2 Gene

No data available for Paralogs for ASAP1-IT2 Gene

Variants for ASAP1-IT2 Gene

Sequence variations from dbSNP and Humsavar for ASAP1-IT2 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs1000160727 -- 130,084,804(+) AAAAA(A/C)AAAGG intron-variant, upstream-variant-2KB
rs1000493167 -- 130,086,240(+) GAATC(C/T)TGGCC intron-variant, upstream-variant-2KB
rs1001270974 -- 130,082,945(+) GAGTT(A/C)TAACA intron-variant, nc-transcript-variant
rs1003116949 -- 130,086,019(+) GGGTG(A/C)CATGC intron-variant, upstream-variant-2KB
rs1004931686 -- 130,086,501(+) CCATA(A/C)ACCTG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for ASAP1-IT2 Gene

Variant ID Type Subtype PubMed ID
esv3576608 CNV gain 25503493
nsv1018045 CNV gain 25217958
nsv465808 CNV loss 19166990
nsv465810 CNV gain 19166990
nsv524349 CNV gain 19592680
nsv612231 CNV gain 21841781
nsv612232 CNV loss 21841781
nsv612234 CNV gain 21841781

Relevant External Links for ASAP1-IT2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ASAP1-IT2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ASAP1-IT2 Gene

Disorders for ASAP1-IT2 Gene

Relevant External Links for ASAP1-IT2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ASAP1-IT2

No disorders were found for ASAP1-IT2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ASAP1-IT2 Gene

Publications for ASAP1-IT2 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for ASAP1-IT2 Gene

Sources for ASAP1-IT2 Gene

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