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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

ASAP1-IT1 Gene

RNA gene   GIFtS: 21
GCID: GC08M131308

ASAP1 intronic transcript 1 (non-protein coding)

(Previous names: DDEF1 intronic transcript 1, DDEF1 intronic transcript...)
(Previous symbol: DDEF1IT1)
  Search for ASAP1-IT1
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Biological research products
for ASAP1-IT1    

Aliases
for ASAP1-IT1 gene

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section
Subcategory (RNA class): lncRNA

Quality score for this RNA gene is 2

Aliases
ASAP1 Intronic Transcript 1 (Non-Protein Coding)1 2     NCRNA000501 2
ASAP1-IT1 2     DDEF1 Intronic Transcript 11
ASAP1IT1 2     DDEF1 Intronic Transcript 1 (Non-Protein Coding)1
DDEF1IT11 2     ASAP1IT12
HSPC0541 2     

External Ids:    HGNC: 249981   Entrez Gene: 290652   
ORGUL members:         
NONCODE:n385465    

Export aliases for ASAP1-IT1 gene to outside databases


Summaries
for ASAP1-IT1 gene

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section
  --

Genomic Views
for ASAP1-IT1 gene

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000008.10  NC_018919.1  NT_008046.16  
Regulatory elements:
   Search SABiosciences Regulatory transcription factor binding sites for ASAP1-IT1
         Other transcription factors

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Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ASAP1-IT1


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 8q24.21   HGNC cytogenetic band: 8q24.21

ASAP1-IT1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ASAP1-IT1 gene location

GeneLoc information about chromosome 8         GeneLoc Exon Structure

GeneLoc location for GC08M131308:  view genomic region     (about GC identifiers)

Start:
 131,307,601 bp from pter      End:
 131,308,779 bp from pter
Size:
 1,179 bases      Orientation:
 minus strand

Proteins
for ASAP1-IT1 gene

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section
UniProtKB: --

Protein Domains /
Families
for ASAP1-IT1 gene

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section
   --

Function
for ASAP1-IT1 gene

(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, Sirion Biotech, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, Sirion Biotech, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
About This Section
Animal Models:
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miRNA
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Pathways & Interactions
for ASAP1-IT1 gene

(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
About This Section



Interactions:

    Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for ASAP1-IT1

Drugs & Compounds
for ASAP1-IT1 gene

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section
Browse Small Molecules at EMD Millipore
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Browse Tocris compounds for ASAP1-IT1
Search CenterWatch for drugs/clinical trials and news about ASAP1-IT1 

Transcripts
for ASAP1-IT1 gene

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from EMD Millipore,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, Sirion Biotech, microRNA from QIAGEN,
Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section

Unigene Cluster for ASAP1-IT1:

ASAP1 intronic transcript 1 (non-protein coding)
Hs.639318  [show with all ESTs]
Unigene Representative Sequence: NR_002765

miRNA
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Inhib. RNA
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Primer
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Additional cDNA sequence: 

AF161539.1 NR_002765.2 

2 DOTS entries:

DT.91697734  DT.40301101 

GeneLoc Exon Structure


Expression
for ASAP1-IT1 gene

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

Expression evidence for ASAP1-IT1:none

See probesets specificity/sensitivity at GeneAnnot
CGAP TAG: --


ASAP1-IT1 expression in embryonic tissues and stem cells
Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table

Stem Cell Differentiation: 1 LifeMap Cell 
NameCategory
PureStem™ progenitor EN27 (Embryonic Progenitor Cell)
Expression: Positive    Negative     Selective marker
Experimental details: Curated     Microarrays     In-situ hybridization

Genevestigator expression for ASAP1-IT1

SOURCE GeneReport for Unigene cluster: Hs.639318
    SABiosciences Custom PCR Arrays for ASAP1-IT1
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In Situ
Assay Products: 
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Orthologs
for ASAP1-IT1 gene

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section
   --

Paralogs
for ASAP1-IT1 gene

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
  --

Genomic Variants
for ASAP1-IT1 gene

(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

10/53 NCBI SNPs in ASAP1-IT1 are shown (see all 53)     About this table
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance		Chr 8 posSequence#AA
Chg		TypeMore#Allele
freq		PopTotal
sample		More
----------
rs172132081,2
C--131307141(+) GTCTGG/CAAGTA 3 -- ds5001 int13Minor allele frequency- C:0.01NA 142
rs1412910021,2
--131307191(+) GGTTGC/TTGGAT 3 -- int1 ds50010--------
rs556370171,2
--131307282(+) AGGTGC/GGAGGA 3 -- int1 ds50010--------
rs1483307951,2
--131307288(+) GAGGAC/TTGCTT 3 -- ds5001 int10--------
rs1846905321,2
--131307316(+) ACCAGC/GCTGGG 3 -- ds5001 int10--------
rs1440119931,2
--131307352(+) AAAAT-/AATA  
        AATAA 		3 -- int1 ds50010--------
rs1120248711,2
--131307399(+) TGGCAT/CGCACC 3 -- int1 ds50012Minor allele frequency- C:0.08CSA WA 120
rs1900195711,2
--131307473(+) ACAGTA/GAGCCA 3 -- int1 ds50010--------
rs766602111,2
F--131307519(+) GCAAGA/TCTGTC 3 -- int1 ds50012Minor allele frequency- T:0.03WA NA 238
rs792916301,2
C,F--131307610(+) NNNNAT/CCACAT 3 -- int1 nc-transcript-variant1Minor allele frequency- C:0.03WA 118

HapMap Linkage Disequilibrium report for ASAP1-IT1 (131307601 - 131308779 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
      Database of Genomic Variants (DGV) variations for ASAP1-IT1: --

SABiosciences Cancer Mutation PCR Assays
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Disorders / Diseases
for ASAP1-IT1 gene

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section
   --

Publications
for ASAP1-IT1 gene

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
About This Section

PubMed article for ASAP1-IT1 gene integrated from 9 sources:
(articles sorted by number of sources associating them with ASAP1-IT1)		    Utopia: connect your pdf to the dynamic
world of online information

  1. Cloning and functional analysis of cDNAs with open reading frames for 300 previously undefined genes expressed in CD34+ hematopoietic stem/progenitor cells. (PubMed id 11042152)1, 3 Zhang Q.-H.... Chen Z. (2000)

External Searches for ASAP1-IT1 gene

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section
 ANDOR
Aliases
Free Text  
  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

Genome Databases showing ASAP1-IT1 gene

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section
Entrez Gene: 29065 HGNC: 24998 euGenes: HUgn29065 ECgene: ASAP1-IT1 H-InvDB: ASAP1-IT1

Other Databases showing ASAP1-IT1 gene

(According to HUGE)
About This Section
   --

Specialized Databases showing ASAP1-IT1 gene

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
NameDescription
PharmGKB entry for ASAP1-IT1 Pharmacogenomics, SNPs, Pathways

Intellectual Property
for ASAP1-IT1 gene

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
About This Section
Patent Information for ASAP1-IT1 gene:
Search GeneIP for patents involving ASAP1-IT1

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



Products
for ASAP1-IT1 gene

(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, LifeMap BioReagents, and Sirion Biotech, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
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