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Aliases for ASAP1-IT1 Gene

Subcategory (RNA class) for ASAP1-IT1 Gene

lncRNA

Quality Score for this RNA gene is

2

Aliases for ASAP1-IT1 Gene

  • ASAP1 Intronic Transcript 1 2 3
  • ArfGAP With SH3 Domain, Ankyrin Repeat And PH Domain 1 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • DDEF1 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • ASAP1 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • ASAP1 Intronic Transcript (Non-Protein Coding) 3
  • DDEF1 Intronic Transcript 1 2
  • Non-Protein Coding RNA 50 2
  • NCRNA00050 3
  • ASAP1-IT 3
  • ASAP1IT1 3
  • DDEF1IT1 3
  • ASAP1IT 3
  • HSPC054 3

External Ids for ASAP1-IT1 Gene

ORGUL Members for ASAP1-IT1 Gene

Previous HGNC Symbols for ASAP1-IT1 Gene

  • DDEF1IT1

Previous GeneCards Identifiers for ASAP1-IT1 Gene

  • GC08M131308

Summaries for ASAP1-IT1 Gene

GeneCards Summary for ASAP1-IT1 Gene

ASAP1-IT1 (ASAP1 Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ASAP1-IT1 Gene

Genomics for ASAP1-IT1 Gene

Regulatory Elements for ASAP1-IT1 Gene

Enhancers for ASAP1-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08G130292 1.4 Ensembl ENCODE dbSUPER 0.7 +2.7 2735 1.6 ELF3 PKNOX1 ARID4B BMI1 DMAP1 RAD21 ZNF207 FOS RELB IKZF2 ASAP1-IT1 GC08M130220
GH08G130283 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +12.0 12001 1.8 HDAC1 YBX3 HDGF PKNOX1 ATF1 ZSCAN4 BMI1 ZNF766 GATA2 EGR1 ASAP1 FAM49B ASAP1-IT1 GC08M130220
GH08G130276 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +18.2 18232 4.6 ELF3 HDGF FOXA2 ZSCAN4 SIN3A GATA2 EGR1 FOS RELB ETV6 ASAP1 ASAP1-IT1 GC08M130220
GH08G130301 1.5 Ensembl ENCODE dbSUPER 0.4 -6.1 -6130 1.7 PKNOX1 ARID4B SIN3A FEZF1 ZNF48 YY1 DEK ZNF263 PPARG ZNF610 ASAP1 FAM49B ASAP1-IT1 PIR52530
GH08G130308 1.3 Ensembl ENCODE dbSUPER 0.4 -12.8 -12779 1.0 GATA2 IKZF2 CREM CBFB CEBPB ZEB2 TBX21 SMARCA4 IKZF1 NBN ASAP1 FAM49B ASAP1-IT1 PIR52530
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ASAP1-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for ASAP1-IT1 Gene

Chromosome:
8
Start:
130,295,355 bp from pter
End:
130,296,533 bp from pter
Size:
1,179 bases
Orientation:
Minus strand

Genomic View for ASAP1-IT1 Gene

Genes around ASAP1-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ASAP1-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ASAP1-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ASAP1-IT1 Gene

Proteins for ASAP1-IT1 Gene

Post-translational modifications for ASAP1-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ASAP1-IT1 Gene

Domains & Families for ASAP1-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ASAP1-IT1 Gene

Function for ASAP1-IT1 Gene

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ASAP1-IT1 Gene

Localization for ASAP1-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ASAP1-IT1 Gene

Pathways & Interactions for ASAP1-IT1 Gene

SuperPathways for ASAP1-IT1 Gene

No Data Available

Interacting Proteins for ASAP1-IT1 Gene

Gene Ontology (GO) - Biological Process for ASAP1-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ASAP1-IT1 Gene

Drugs & Compounds for ASAP1-IT1 Gene

No Compound Related Data Available

Transcripts for ASAP1-IT1 Gene

mRNA/cDNA for ASAP1-IT1 Gene

(2) Additional mRNA sequences :

Unigene Clusters for ASAP1-IT1 Gene

ASAP1 intronic transcript 1 (non-protein coding):
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ASAP1-IT1 Gene

No ASD Table

Relevant External Links for ASAP1-IT1 Gene

GeneLoc Exon Structure for
ASAP1-IT1
ECgene alternative splicing isoforms for
ASAP1-IT1

Expression for ASAP1-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ASAP1-IT1 Gene

SOURCE GeneReport for Unigene cluster for ASAP1-IT1 Gene:

Hs.639318
genes like me logo Genes that share expression patterns with ASAP1-IT1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ASAP1-IT1 Gene

Orthologs for ASAP1-IT1 Gene

No data available for Orthologs and Evolution for ASAP1-IT1 Gene

Paralogs for ASAP1-IT1 Gene

No data available for Paralogs for ASAP1-IT1 Gene

Variants for ASAP1-IT1 Gene

Sequence variations from dbSNP and Humsavar for ASAP1-IT1 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs1001815501 -- 130,297,042(+) CCAGG(A/G/T)CAACT intron-variant, upstream-variant-2KB
rs1001899909 -- 130,296,766(+) AAAGA(A/G)AAAAA intron-variant, upstream-variant-2KB
rs1002182786 -- 130,297,252(+) TCCCC(C/T)CATGC intron-variant, upstream-variant-2KB
rs1002411091 -- 130,298,123(+) AGGGT(A/G)CAAAA intron-variant, upstream-variant-2KB
rs1002549517 -- 130,298,189(+) TTAGC(C/G)CAGTG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for ASAP1-IT1 Gene

Variant ID Type Subtype PubMed ID
nsv1016494 CNV gain 25217958
nsv465810 CNV gain 19166990
nsv612234 CNV gain 21841781
nsv949983 CNV duplication 24416366

Relevant External Links for ASAP1-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ASAP1-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ASAP1-IT1 Gene

Disorders for ASAP1-IT1 Gene

Relevant External Links for ASAP1-IT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ASAP1-IT1

No disorders were found for ASAP1-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ASAP1-IT1 Gene

Publications for ASAP1-IT1 Gene

  1. Long non-coding RNAs, ASAP1-IT1, FAM215A, and LINC00472, in epithelial ovarian cancer. (PMID: 27667152) Fu Y. … Yu H. (Gynecol. Oncol. 2016) 2 3 64
  2. Cloning and functional analysis of cDNAs with open reading frames for 300 previously undefined genes expressed in CD34+ hematopoietic stem/progenitor cells. (PMID: 11042152) Zhang Q.-H. … Chen Z. (Genome Res. 2000) 2 3 64

Products for ASAP1-IT1 Gene

Sources for ASAP1-IT1 Gene

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