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Aliases for AS-PTPRE Gene

Subcategory (RNA class) for AS-PTPRE Gene

ncRNA

Quality Score for this RNA gene is

1

Aliases for AS-PTPRE Gene

  • LncRNA Antisense To PTPRE Protein-Coding Gene 3

External Ids for AS-PTPRE Gene

Summaries for AS-PTPRE Gene

GeneCards Summary for AS-PTPRE Gene

AS-PTPRE (LncRNA Antisense To PTPRE Protein-Coding Gene) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for AS-PTPRE Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for AS-PTPRE Gene

Genomics for AS-PTPRE Gene

Regulatory Elements for AS-PTPRE Gene

Enhancers for AS-PTPRE Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10H128061 1.4 Ensembl ENCODE dbSUPER 0.7 -1.1 -1075 4 HDGF PKNOX1 TBL1XR1 BMI1 ZBTB40 BATF EGR1 ATF7 ETV6 RUNX3 PTPRE AS-PTPRE GC10M128055
GH10H128057 0.8 dbSUPER 0.7 +4.0 3954 3 HDGF SUZ12 ZNF473 ZSCAN4 ZNF704 YBX1 CDC5L ZBTB7B ZKSCAN1 MTA3 PTPRE AS-PTPRE GC10M128051
GH10H128053 0.5 ENCODE dbSUPER 0.4 +8.8 8807 1 GC10M128051 AS-PTPRE
GH10H128052 0.5 FANTOM5 dbSUPER 0.4 +10.1 10074 0 PTPRE GC10M128051 AS-PTPRE
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around AS-PTPRE on UCSC Golden Path with GeneCards custom track

Genomic Location for AS-PTPRE Gene

Chromosome:
10
Start:
128,056,197 bp from pter
End:
128,063,076 bp from pter
Size:
6,880 bases
Orientation:
Minus strand

Genomic View for AS-PTPRE Gene

Genes around AS-PTPRE on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
AS-PTPRE Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AS-PTPRE Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AS-PTPRE Gene

Proteins for AS-PTPRE Gene

Post-translational modifications for AS-PTPRE Gene

No Post-translational modifications

No data available for DME Specific Peptides for AS-PTPRE Gene

Domains & Families for AS-PTPRE Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for AS-PTPRE Gene

Function for AS-PTPRE Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AS-PTPRE Gene

Localization for AS-PTPRE Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for AS-PTPRE Gene

Pathways & Interactions for AS-PTPRE Gene

SuperPathways for AS-PTPRE Gene

No Data Available

Interacting Proteins for AS-PTPRE Gene

Gene Ontology (GO) - Biological Process for AS-PTPRE Gene

None

No data available for Pathways by source and SIGNOR curated interactions for AS-PTPRE Gene

Drugs & Compounds for AS-PTPRE Gene

No Compound Related Data Available

Transcripts for AS-PTPRE Gene

Alternative Splicing Database (ASD) splice patterns (SP) for AS-PTPRE Gene

No ASD Table

Relevant External Links for AS-PTPRE Gene

GeneLoc Exon Structure for
AS-PTPRE

No data available for mRNA/cDNA for AS-PTPRE Gene

Expression for AS-PTPRE Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for AS-PTPRE Gene

Orthologs for AS-PTPRE Gene

No data available for Orthologs and Evolution for AS-PTPRE Gene

Paralogs for AS-PTPRE Gene

No data available for Paralogs for AS-PTPRE Gene

Variants for AS-PTPRE Gene

Sequence variations from dbSNP and Humsavar for AS-PTPRE Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs1000056326 -- 128,060,111(+) CACAT(A/G)CACAC intron-variant
rs1000564864 -- 128,061,864(+) ACACA(A/G)CGGAT intron-variant
rs1000620378 -- 128,062,105(+) CGTGC(C/G)CTTCA intron-variant
rs1001057548 -- 128,058,645(+) GAGCT(C/T)TCAGG intron-variant
rs1001270633 -- 128,060,352(+) GCAAC(A/G)GGCTG intron-variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for AS-PTPRE Gene

Disorders for AS-PTPRE Gene

Relevant External Links for AS-PTPRE

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
AS-PTPRE

No disorders were found for AS-PTPRE Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for AS-PTPRE Gene

Publications for AS-PTPRE Gene

No publications were found for AS-PTPRE Gene.

Products for AS-PTPRE Gene

Sources for AS-PTPRE Gene

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