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Aliases for ARSD Gene

Aliases for ARSD Gene

  • Arylsulfatase D 2 3 5
  • ASD 3 4
  • Testis Tissue Sperm-Binding Protein Li 39a 3
  • EC 3.1.6.2 58
  • EC 3.1.6.- 4

External Ids for ARSD Gene

Previous GeneCards Identifiers for ARSD Gene

  • GC0XM002129
  • GC0XM001993
  • GC0XM002353
  • GC0XM002420
  • GC0XM000764

Summaries for ARSD Gene

Entrez Gene Summary for ARSD Gene

  • The protein encoded by this gene is a member of the sulfatase family. Sulfatases are essential for the correct composition of bone and cartilage matrix. The encoded protein is postranslationally glycosylated and localized to the lysosome. This gene is located within a cluster of similar arylsulfatase genes on chromosome X. A related pseudogene has been identified in the pseudoautosomal region of chromosome Y. [provided by RefSeq, Jul 2011]

GeneCards Summary for ARSD Gene

ARSD (Arylsulfatase D) is a Protein Coding gene. Diseases associated with ARSD include Chondrodysplasia Punctata, Tibia-Metacarpal Type. Among its related pathways are Gamma carboxylation, hypusine formation and arylsulfatase activation and Metabolism. GO annotations related to this gene include sulfuric ester hydrolase activity and arylsulfatase activity. An important paralog of this gene is ARSE.

Additional gene information for ARSD Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ARSD Gene

Genomics for ARSD Gene

Regulatory Elements for ARSD Gene

Enhancers for ARSD Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH0XH002894 1.7 FANTOM5 Ensembl ENCODE dbSUPER 8.5 +32.0 31997 5.8 HDAC1 PKNOX1 ATF1 NFIB ARNT YY1 TCF12 GATA2 FOS RCOR1 ARSH ARSD ARSE ARSD-AS1 PIR48029
GH0XH002888 1.1 Ensembl ENCODE 6.1 +38.6 38632 5.1 HDAC1 CTCF PKNOX1 ATF1 NFRKB MTA3 CTBP1 FOXK2 ZSCAN29 EZH2 ARSD PIR48029 ARSD-AS1
GH0XH002703 1.6 FANTOM5 Ensembl dbSUPER 1.6 +222.2 222175 8 PKNOX1 FOXA2 ARID4B SIN3A ZNF143 FOS ATF7 RUNX3 JUNB NFIL3 ZBED1 CD99 DHRSX ARSD XG
GH0XH002927 0.9 ENCODE 0.7 +0.7 666 2.6 TBP FOXA2 ARID4B SIN3A DMAP1 THRB YY1 GTF3C2 ELK1 RCOR1 CD99P1 ARSD PIR36938
GH0XH002922 0.9 ENCODE 0.4 +7.0 6961 0.1 HDAC1 PKNOX1 ATF1 TBL1XR1 CHAMP1 TCF12 GATA2 EGR1 ATF7 CEBPB PIR36938 ARSD
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ARSD on UCSC Golden Path with GeneCards custom track

Promoters for ARSD Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000243894 475 1801 ELF3 ARID4B SIN3A DMAP1 THRB YY1 GTF3C2 RCOR1 SP5 NFYC

Genomic Locations for ARSD Gene

Genomic Locations for ARSD Gene
chrX:2,903,970-2,929,375
(GRCh38/hg38)
Size:
25,406 bases
Orientation:
Minus strand
chrX:2,822,011-2,847,392
(GRCh37/hg19)

Genomic View for ARSD Gene

Genes around ARSD on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ARSD Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ARSD Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ARSD Gene

Proteins for ARSD Gene

  • Protein details for ARSD Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P51689-ARSD_HUMAN
    Recommended name:
    Arylsulfatase D
    Protein Accession:
    P51689
    Secondary Accessions:
    • Q9UHJ8

    Protein attributes for ARSD Gene

    Size:
    593 amino acids
    Molecular mass:
    64860 Da
    Cofactor:
    Name=Ca(2+); Xref=ChEBI:CHEBI:29108;
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=CAA58555.1; Type=Frameshift; Positions=Several; Evidence={ECO:0000305};

    Alternative splice isoforms for ARSD Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ARSD Gene

Selected DME Specific Peptides for ARSD Gene

P51689:
  • HEFLFHYC
  • NGIYKGG
  • WEGGIRVPG

Post-translational modifications for ARSD Gene

  • The conversion to 3-oxoalanine (also known as C-formylglycine, FGly), of a serine or cysteine residue in prokaryotes and of a cysteine residue in eukaryotes, is critical for catalytic activity.
  • Glycosylation at posLast=6161, posLast=128128, and Asn347
  • Modification sites at PhosphoSitePlus

Other Protein References for ARSD Gene

Domains & Families for ARSD Gene

Gene Families for ARSD Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted intracellular proteins
  • Predicted membrane proteins

Protein Domains for ARSD Gene

Suggested Antigen Peptide Sequences for ARSD Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

P51689

UniProtKB/Swiss-Prot:

ARSD_HUMAN :
  • Belongs to the sulfatase family.
Family:
  • Belongs to the sulfatase family.
genes like me logo Genes that share domains with ARSD: view

Function for ARSD Gene

Molecular function for ARSD Gene

GENATLAS Biochemistry:
arylsulfatase D,X-linked,escaping inactivation,highly homologous to ARSC1 with two alternatively spliced isoforms

Enzyme Numbers (IUBMB) for ARSD Gene

Gene Ontology (GO) - Molecular Function for ARSD Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004065 arylsulfatase activity TAS 7720070
GO:0008484 sulfuric ester hydrolase activity IEA --
GO:0016787 hydrolase activity IEA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ARSD: view
genes like me logo Genes that share phenotypes with ARSD: view

miRNA for ARSD Gene

Clone Products

No data available for Phenotypes From GWAS Catalog , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ARSD Gene

Localization for ARSD Gene

Subcellular locations from UniProtKB/Swiss-Prot for ARSD Gene

Lysosome.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ARSD gene
Compartment Confidence
extracellular 5
lysosome 5
endoplasmic reticulum 4
plasma membrane 1
nucleus 1
cytosol 1
golgi apparatus 1

Subcellular locations from the

Human Protein Atlas (HPA)
  • Lipid droplets (2)
  • Vesicles (2)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for ARSD Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005764 lysosome IEA --
GO:0005788 endoplasmic reticulum lumen TAS --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
GO:0070062 extracellular exosome IDA 23376485
genes like me logo Genes that share ontologies with ARSD: view

Pathways & Interactions for ARSD Gene

genes like me logo Genes that share pathways with ARSD: view

Gene Ontology (GO) - Biological Process for ARSD Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006687 glycosphingolipid metabolic process TAS --
GO:0008152 metabolic process IEA --
GO:0043687 post-translational protein modification TAS --
genes like me logo Genes that share ontologies with ARSD: view

No data available for SIGNOR curated interactions for ARSD Gene

Drugs & Compounds for ARSD Gene

(4) Drugs for ARSD Gene - From: HMDB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Estrone Approved Pharma Agonist Estrogenic hormone 22
Estrone sulfate Approved Pharma 0
Water Approved Pharma 0
calcium Nutra 0

(9) Additional Compounds for ARSD Gene - From: HMDB

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
3-O-Sulfogalactosylceramide (d18:1/24:0)
  • 3'-O-Sulphogalactosylceramide
  • 3-O-Sulfo-beta-D-galactosylceramide
  • 3-O-Sulfo-beta-delta-galactosylceramide
  • 3-O-Sulfogalactosylceramide
  • 3-O-Sulphogalactosylceramide
151122-71-3
Galactosylceramide (d18:1/16:0)
  • a-GalCer
  • alpha-GalCer
  • Cerebroside
  • D-Galactosyl-N-acylsphingosine
  • D-Galactosylceramide
Galactosylceramide (d18:1/18:0)
  • a-GalCer
  • alpha-GalCer
  • Cerebroside
  • D-Galactosyl-N-acylsphingosine
  • D-Galactosylceramide
Galactosylceramide (d18:1/18:1(9Z))
  • a-GalCer
  • alpha-GalCer
  • Cerebroside
  • D-Galactosyl-N-acylsphingosine
  • D-Galactosylceramide
Galactosylceramide (d18:1/20:0)
  • a-GalCer
  • alpha-GalCer
  • Cerebroside
  • D-Galactosyl-N-acylsphingosine
  • D-Galactosylceramide
genes like me logo Genes that share compounds with ARSD: view

Transcripts for ARSD Gene

Unigene Clusters for ARSD Gene

Arylsulfatase D:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ARSD Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4a · 4b ^ 5a · 5b ^ 6 ^ 7a · 7b ^ 8 ^ 9 ^ 10a · 10b ^ 11a · 11b · 11c
SP1: - - - -
SP2: -
SP3:
SP4: - - - - - - - - - - - -
SP5: -

Relevant External Links for ARSD Gene

GeneLoc Exon Structure for
ARSD
ECgene alternative splicing isoforms for
ARSD

Expression for ARSD Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ARSD Gene

Protein differential expression in normal tissues from HIPED for ARSD Gene

This gene is overexpressed in Nasal epithelium (61.9).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for ARSD Gene



NURSA nuclear receptor signaling pathways regulating expression of ARSD Gene:

ARSD

SOURCE GeneReport for Unigene cluster for ARSD Gene:

Hs.528631

mRNA Expression by UniProt/SwissProt for ARSD Gene:

P51689-ARSD_HUMAN
Tissue specificity: Expressed in the pancreas, kidney, liver, lung, placenta, brain and heart.

Evidence on tissue expression from TISSUES for ARSD Gene

  • Kidney(4.4)
  • Liver(4.3)
  • Intestine(4.2)
genes like me logo Genes that share expression patterns with ARSD: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein tissue co-expression partners and Phenotype-based relationships between genes and organs from Gene ORGANizer for ARSD Gene

Orthologs for ARSD Gene

This gene was present in the common ancestor of animals.

Orthologs for ARSD Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC745720 33
  • 93.83 (n)
ARSD 34
  • 89 (a)
OneToOne
dog
(Canis familiaris)
Mammalia ARSD 33 34
  • 79.5 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia ARSD 34
  • 78 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia ARSD 34
  • 71 (a)
OneToOne
chicken
(Gallus gallus)
Aves -- 34
  • 70 (a)
OneToMany
ARSH 34
  • 65 (a)
OneToMany
-- 34
  • 63 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 34
  • 64 (a)
OneToMany
-- 34
  • 61 (a)
OneToMany
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC100494567 33
  • 60.62 (n)
zebrafish
(Danio rerio)
Actinopterygii arsh 33 34
  • 60.98 (n)
worm
(Caenorhabditis elegans)
Secernentea sul-2 34
  • 30 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 34
  • 35 (a)
ManyToMany
Species where no ortholog for ARSD was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for ARSD Gene

ENSEMBL:
Gene Tree for ARSD (if available)
TreeFam:
Gene Tree for ARSD (if available)

Paralogs for ARSD Gene

Paralogs for ARSD Gene

(4) SIMAP similar genes for ARSD Gene using alignment to 3 proteins:

Pseudogenes.org Pseudogenes for ARSD Gene

genes like me logo Genes that share paralogs with ARSD: view

Variants for ARSD Gene

Sequence variations from dbSNP and Humsavar for ARSD Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type
rs1000070987 -- 2,929,980(+) TGGGA(C/T)GGGGA upstream-variant-2KB
rs1000145381 -- 2,926,708(+) GAAGA(C/T)GTGTA intron-variant
rs1000682894 -- 2,912,675(+) TAGTG(C/T)CGTGT intron-variant
rs1000897865 -- 2,923,173(+) CTGGC(C/T)GCTTC intron-variant
rs1001189832 -- 2,910,245(+) ATAAT(-/G)TATTA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ARSD Gene

Variant ID Type Subtype PubMed ID
nsv526612 CNV loss 19592680
nsv1147251 CNV duplication 26484159
nsv1124491 CNV deletion 24896259
nsv1110591 CNV duplication 24896259
nsv1076698 CNV duplication 25765185
esv3573434 CNV loss 25503493
esv34985 CNV gain 17911159
esv32931 CNV loss 17666407
esv2758855 CNV gain 17122850

Variation tolerance for ARSD Gene

Residual Variation Intolerance Score: 97% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 5.00; 68.41% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ARSD Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ARSD

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ARSD Gene

Disorders for ARSD Gene

MalaCards: The human disease database

(1) MalaCards diseases for ARSD Gene - From: GeneCards

Disorder Aliases PubMed IDs
chondrodysplasia punctata, tibia-metacarpal type
  • chondrodysplasia punctata, tibia metacarpal type
- elite association - COSMIC cancer census association via MalaCards
Search ARSD in MalaCards View complete list of genes associated with diseases

Relevant External Links for ARSD

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ARSD
genes like me logo Genes that share disorders with ARSD: view

No data available for UniProtKB/Swiss-Prot and Genatlas for ARSD Gene

Publications for ARSD Gene

  1. Arylsulfatase D gene in Xp22.3 encodes two protein isoforms. (PMID: 11177574) Urbitsch P … Vogt PH (DNA and cell biology 2000) 3 4 22 60
  2. A cluster of sulfatase genes on Xp22.3: mutations in chondrodysplasia punctata (CDPX) and implications for warfarin embryopathy. (PMID: 7720070) Franco B … Ballabio A (Cell 1995) 2 3 4 60
  3. Longterm follow-up in chondrodysplasia punctata, tibia-metacarpal type, demonstrating natural history. (PMID: 14699613) Savarirayan R … Sheffield LJ (American journal of medical genetics. Part A 2004) 3 22 60
  4. Expression profiling of human sulfotransferase and sulfatase gene superfamilies in epithelial tissues and cultured cells. (PMID: 11027669) Dooley TP … Wilborn TW (Biochemical and biophysical research communications 2000) 3 22 60
  5. Identification by shotgun sequencing, genomic organization, and functional analysis of a fourth arylsulfatase gene (ARSF) from the Xp22.3 region. (PMID: 9192838) Puca AA … Franco B (Genomics 1997) 3 22 60

Products for ARSD Gene

Sources for ARSD Gene

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