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Aliases for ARRDC5 Gene

Aliases for ARRDC5 Gene

  • Arrestin Domain Containing 5 2 3 5

External Ids for ARRDC5 Gene

Previous GeneCards Identifiers for ARRDC5 Gene

  • GC19M004843
  • GC19U900462
  • GC19M004844
  • GC19M004652

Summaries for ARRDC5 Gene

GeneCards Summary for ARRDC5 Gene

ARRDC5 (Arrestin Domain Containing 5) is a Protein Coding gene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ARRDC5 Gene

Genomics for ARRDC5 Gene

Regulatory Elements for ARRDC5 Gene

Enhancers for ARRDC5 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19G004987 1.4 Ensembl ENCODE dbSUPER 12 -73.4 -73401 5.9 HDAC1 TBL1XR1 KLF17 ZNF2 YY1 TCF12 GATA2 RCOR1 EGR2 ELF1 KDM4B ARRDC5 PLIN3 PTPRS UHRF1 GC19M004987 GC19P005074
GH19G004907 1.9 FANTOM5 Ensembl ENCODE dbSUPER 8 +4.1 4138 9.5 HDGF PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 ZNF2 ZNF766 ZNF143 FOS ENSG00000267030 ENSG00000267769 SAFB SNRPEP4 ENSG00000269807 SAFB2 PLIN3 SH3GL1 DPP9-AS1 ENSG00000267255
GH19G004828 1.3 ENCODE dbSUPER 11.6 +85.7 85654 4.6 HDGF ARNT SIN3A ARID4B DMAP1 YY1 SLC30A9 ZNF143 ZNF207 ZNF548 SAFB2 PLIN3 SAFB ARRDC5 FEM1A MIR7-3 MIR7-3HG SNRPEP4 ENSG00000269807 DPP9-AS1
GH19G004851 1.2 ENCODE dbSUPER 11.8 +65.0 65047 0.2 HDGF FOXA2 AGO1 WRNIP1 ARID4B DMAP1 ZNF2 ZNF48 ZBTB7B TCF12 ARRDC5 ENSG00000267769 GC19M004858 GC19M004846 PIR52015
GH19G004860 1 ENCODE dbSUPER 12 +55.2 55216 2.5 HDGF NFIB SIN3A ZIC2 HIC1 CTBP1 ZFHX2 ZNF280D NFIA ZHX2 PLIN3 TICAM1 ARRDC5 DPP9 GC19M004858
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ARRDC5 on UCSC Golden Path with GeneCards custom track

Genomic Location for ARRDC5 Gene

Chromosome:
19
Start:
4,890,437 bp from pter
End:
4,916,820 bp from pter
Size:
26,384 bases
Orientation:
Minus strand

Genomic View for ARRDC5 Gene

Genes around ARRDC5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ARRDC5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ARRDC5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ARRDC5 Gene

Proteins for ARRDC5 Gene

  • Protein details for ARRDC5 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NEK1-ARRD5_HUMAN
    Recommended name:
    Arrestin domain-containing protein 5
    Protein Accession:
    A6NEK1

    Protein attributes for ARRDC5 Gene

    Size:
    342 amino acids
    Molecular mass:
    38383 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=EAW69191.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};

neXtProt entry for ARRDC5 Gene

Post-translational modifications for ARRDC5 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ARRDC5 Gene

No data available for DME Specific Peptides for ARRDC5 Gene

Domains & Families for ARRDC5 Gene

Gene Families for ARRDC5 Gene

Protein Domains for ARRDC5 Gene

Suggested Antigen Peptide Sequences for ARRDC5 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

A6NEK1

UniProtKB/Swiss-Prot:

ARRD5_HUMAN :
  • Belongs to the arrestin family.
Family:
  • Belongs to the arrestin family.
genes like me logo Genes that share domains with ARRDC5: view

Function for ARRDC5 Gene

Phenotypes for ARRDC5 Gene

GenomeRNAi human phenotypes for ARRDC5:
genes like me logo Genes that share phenotypes with ARRDC5: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ARRDC5 Gene

Localization for ARRDC5 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ARRDC5 gene
Compartment Confidence
nucleus 2
cytosol 2
cytoskeleton 1
mitochondrion 1
peroxisome 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for ARRDC5 Gene

Pathways & Interactions for ARRDC5 Gene

SuperPathways for ARRDC5 Gene

No Data Available

Interacting Proteins for ARRDC5 Gene

Gene Ontology (GO) - Biological Process for ARRDC5 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ARRDC5 Gene

Drugs & Compounds for ARRDC5 Gene

No Compound Related Data Available

Transcripts for ARRDC5 Gene

mRNA/cDNA for ARRDC5 Gene

(5) REFSEQ mRNAs :
(0) Additional mRNA sequences :
-
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ARRDC5 Gene

Arrestin domain containing 5:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Alternative Splicing Database (ASD) splice patterns (SP) for ARRDC5 Gene

No ASD Table

Relevant External Links for ARRDC5 Gene

GeneLoc Exon Structure for
ARRDC5
ECgene alternative splicing isoforms for
ARRDC5

Expression for ARRDC5 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ARRDC5 Gene

mRNA differential expression in normal tissues according to GTEx for ARRDC5 Gene

This gene is overexpressed in Testis (x28.7) and Whole Blood (x6.8).

Protein differential expression in normal tissues from HIPED for ARRDC5 Gene

This gene is overexpressed in Testis (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for ARRDC5 Gene



Protein tissue co-expression partners for ARRDC5 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of ARRDC5 Gene:

ARRDC5

SOURCE GeneReport for Unigene cluster for ARRDC5 Gene:

Hs.574574
genes like me logo Genes that share expression patterns with ARRDC5: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ARRDC5 Gene

Orthologs for ARRDC5 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ARRDC5 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ARRDC5 35 34
  • 98.93 (n)
OneToOne
dog
(Canis familiaris)
Mammalia ARRDC5 34 35
  • 84.56 (n)
cow
(Bos Taurus)
Mammalia ARRDC5 35 34
  • 84.56 (n)
OneToOne
rat
(Rattus norvegicus)
Mammalia Arrdc5 34
  • 75 (n)
mouse
(Mus musculus)
Mammalia Arrdc5 16 35 34
  • 74.68 (n)
chicken
(Gallus gallus)
Aves LOC101752017 34
  • 58.04 (n)
Species where no ortholog for ARRDC5 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ARRDC5 Gene

ENSEMBL:
Gene Tree for ARRDC5 (if available)
TreeFam:
Gene Tree for ARRDC5 (if available)

Paralogs for ARRDC5 Gene

No data available for Paralogs for ARRDC5 Gene

Variants for ARRDC5 Gene

Sequence variations from dbSNP and Humsavar for ARRDC5 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs1000056409 -- 4,916,306(+) GTCTC(-/A)AAAAA intron-variant, upstream-variant-2KB
rs1000199938 -- 4,912,238(+) GGCCG(A/G)GCTCG intron-variant
rs1000203050 -- 4,876,402(+) CACTG(C/T)GCCCG intron-variant
rs1000322379 -- 4,907,334(+) GCACG(A/T)TCTCT intron-variant
rs1000345683 -- 4,875,152(+) GCTGG(G/T)ATTAC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ARRDC5 Gene

Variant ID Type Subtype PubMed ID
esv25954 CNV gain 19812545
esv3893158 CNV loss 25118596
nsv1065556 CNV loss 25217958
nsv1141946 OTHER inversion 24896259
nsv470117 CNV loss 18288195

Variation tolerance for ARRDC5 Gene

Residual Variation Intolerance Score: 73.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.38; 42.20% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ARRDC5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ARRDC5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ARRDC5 Gene

Disorders for ARRDC5 Gene

Relevant External Links for ARRDC5

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ARRDC5

No disorders were found for ARRDC5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ARRDC5 Gene

Publications for ARRDC5 Gene

  1. The functional landscape of Hsp27 reveals new cellular processes such as DNA repair and alternative splicing and proposes novel anticancer targets. (PMID: 25277244) Katsogiannou M. … Rocchi P. (Mol. Cell Proteomics 2014) 3 64
  2. Mig-6 controls EGFR trafficking and suppresses gliomagenesis. (PMID: 20351267) Ying H. … DePinho R.A. (Proc. Natl. Acad. Sci. U.S.A. 2010) 3 64
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  4. The DNA sequence and biology of human chromosome 19. (PMID: 15057824) Grimwood J. … Lucas S.M. (Nature 2004) 4 64
  5. Polyserase-I, a human polyprotease with the ability to generate independent serine protease domains from a single translation product. (PMID: 12886014) Cal S. … Lopez-Otin C. (Proc. Natl. Acad. Sci. U.S.A. 2003) 2 64

Products for ARRDC5 Gene

Sources for ARRDC5 Gene

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