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Aliases for ARRDC3-AS1 Gene

Subcategory (RNA class) for ARRDC3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ARRDC3-AS1 Gene

  • ARRDC3 Antisense RNA 1 2 3 5
  • ARRDC3 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for ARRDC3-AS1 Gene

Previous GeneCards Identifiers for ARRDC3-AS1 Gene

  • GC05P090676

Summaries for ARRDC3-AS1 Gene

GeneCards Summary for ARRDC3-AS1 Gene

ARRDC3-AS1 (ARRDC3 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ARRDC3-AS1 Gene

Genomics for ARRDC3-AS1 Gene

Regulatory Elements for ARRDC3-AS1 Gene

Enhancers for ARRDC3-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05G091376 1.8 FANTOM5 ENCODE dbSUPER 0.7 +0.6 586 8.5 CREB3L1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC TBX21 MEF2D ENSG00000241059 RPS18P7 ARRDC3 LYSMD3 ARRDC3-AS1
GH05G091370 1 dbSUPER 0.4 -7.2 -7166 6.2 FEZF1 ZNF2 ZNF121 ZNF416 KLF7 SP3 YY2 ZNF518A ZNF610 PBX2 LYSMD3 ENSG00000241059 GC05P091368 ARRDC3-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ARRDC3-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for ARRDC3-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000183931 1353 5801 CREB3L1 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC TBX21

Genomic Location for ARRDC3-AS1 Gene

Chromosome:
5
Start:
91,380,347 bp from pter
End:
91,439,085 bp from pter
Size:
58,739 bases
Orientation:
Plus strand

Genomic View for ARRDC3-AS1 Gene

Genes around ARRDC3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ARRDC3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ARRDC3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ARRDC3-AS1 Gene

Proteins for ARRDC3-AS1 Gene

Post-translational modifications for ARRDC3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ARRDC3-AS1 Gene

Domains & Families for ARRDC3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ARRDC3-AS1 Gene

Function for ARRDC3-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ARRDC3-AS1 Gene

Localization for ARRDC3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ARRDC3-AS1 Gene

Pathways & Interactions for ARRDC3-AS1 Gene

SuperPathways for ARRDC3-AS1 Gene

No Data Available

Interacting Proteins for ARRDC3-AS1 Gene

Gene Ontology (GO) - Biological Process for ARRDC3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ARRDC3-AS1 Gene

Drugs & Compounds for ARRDC3-AS1 Gene

No Compound Related Data Available

Transcripts for ARRDC3-AS1 Gene

mRNA/cDNA for ARRDC3-AS1 Gene

(2) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ARRDC3-AS1 Gene

ARRDC3 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ARRDC3-AS1 Gene

No ASD Table

Relevant External Links for ARRDC3-AS1 Gene

GeneLoc Exon Structure for
ARRDC3-AS1
ECgene alternative splicing isoforms for
ARRDC3-AS1

Expression for ARRDC3-AS1 Gene

SOURCE GeneReport for Unigene cluster for ARRDC3-AS1 Gene:

Hs.116364
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ARRDC3-AS1 Gene

Orthologs for ARRDC3-AS1 Gene

Evolution for ARRDC3-AS1 Gene

ENSEMBL:
Gene Tree for ARRDC3-AS1 (if available)
TreeFam:
Gene Tree for ARRDC3-AS1 (if available)

No data available for Orthologs for ARRDC3-AS1 Gene

Paralogs for ARRDC3-AS1 Gene

No data available for Paralogs for ARRDC3-AS1 Gene

Variants for ARRDC3-AS1 Gene

Sequence variations from dbSNP and Humsavar for ARRDC3-AS1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs1000060659 -- 91,416,094(+) ATCTC(C/T)GGGAT intron-variant
rs1000111665 -- 91,390,923(+) ATTTA(C/T)TGTTT intron-variant
rs1000121021 -- 91,409,195(+) GTCCA(G/T)GTTTA intron-variant
rs1000168599 -- 91,409,548(+) CTGTA(A/G)CCCTG intron-variant
rs1000410505 -- 91,415,784(+) ATTGG(A/C/G)ACAAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ARRDC3-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1623e212 CNV loss 25503493
nsv1145067 CNV deletion 24896259

Relevant External Links for ARRDC3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ARRDC3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ARRDC3-AS1 Gene

Disorders for ARRDC3-AS1 Gene

Relevant External Links for ARRDC3-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ARRDC3-AS1

No disorders were found for ARRDC3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ARRDC3-AS1 Gene

Publications for ARRDC3-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for ARRDC3-AS1 Gene

Sources for ARRDC3-AS1 Gene

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