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Aliases for ARRDC3-AS1 Gene

Subcategory (RNA class) for ARRDC3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ARRDC3-AS1 Gene

  • ARRDC3 Antisense RNA 1 2 3 5
  • ARRDC3 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for ARRDC3-AS1 Gene

Previous GeneCards Identifiers for ARRDC3-AS1 Gene

  • GC05P090676

Summaries for ARRDC3-AS1 Gene

GeneCards Summary for ARRDC3-AS1 Gene

ARRDC3-AS1 (ARRDC3 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ARRDC3-AS1 Gene

Genomics for ARRDC3-AS1 Gene

Regulatory Elements for ARRDC3-AS1 Gene

Enhancers for ARRDC3-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05F091376 1.1 FANTOM5 ENCODE 0.8 +0.6 586 8.5 PKNOX1 CREB3L1 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 CBX5 ENSG00000241059 RPS18P7 ARRDC3 LYSMD3 ARRDC3-AS1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around ARRDC3-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for ARRDC3-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001285202 1453 6401 PKNOX1 CREB3L1 WRNIP1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 SLC30A9

Genomic Location for ARRDC3-AS1 Gene

Chromosome:
5
Start:
91,380,347 bp from pter
End:
91,439,085 bp from pter
Size:
58,739 bases
Orientation:
Plus strand

Genomic View for ARRDC3-AS1 Gene

Genes around ARRDC3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ARRDC3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ARRDC3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ARRDC3-AS1 Gene

Proteins for ARRDC3-AS1 Gene

Post-translational modifications for ARRDC3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ARRDC3-AS1 Gene

Domains & Families for ARRDC3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ARRDC3-AS1 Gene

Function for ARRDC3-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ARRDC3-AS1 Gene

Localization for ARRDC3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ARRDC3-AS1 Gene

Pathways & Interactions for ARRDC3-AS1 Gene

SuperPathways for ARRDC3-AS1 Gene

No Data Available

Interacting Proteins for ARRDC3-AS1 Gene

Gene Ontology (GO) - Biological Process for ARRDC3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ARRDC3-AS1 Gene

Transcripts for ARRDC3-AS1 Gene

mRNA/cDNA for ARRDC3-AS1 Gene

(2) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ARRDC3-AS1 Gene

ARRDC3 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ARRDC3-AS1 Gene

No ASD Table

Relevant External Links for ARRDC3-AS1 Gene

GeneLoc Exon Structure for
ARRDC3-AS1
ECgene alternative splicing isoforms for
ARRDC3-AS1

Expression for ARRDC3-AS1 Gene

SOURCE GeneReport for Unigene cluster for ARRDC3-AS1 Gene:

Hs.116364
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for ARRDC3-AS1 Gene

Orthologs for ARRDC3-AS1 Gene

Evolution for ARRDC3-AS1 Gene

ENSEMBL:
Gene Tree for ARRDC3-AS1 (if available)
TreeFam:
Gene Tree for ARRDC3-AS1 (if available)

No data available for Orthologs for ARRDC3-AS1 Gene

Paralogs for ARRDC3-AS1 Gene

No data available for Paralogs for ARRDC3-AS1 Gene

Variants for ARRDC3-AS1 Gene

Sequence variations from dbSNP and Humsavar for ARRDC3-AS1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs10052203 -- 91,389,021(+) ccgag(G/T)agctg intron-variant
rs10058025 -- 91,393,235(+) CAAAC(A/G)TTTTC intron-variant
rs10063683 -- 91,418,778(+) TGAGT(A/G)AAAGT intron-variant
rs10073657 -- 91,393,932(+) ACTTG(A/G)TATAT intron-variant
rs10556107 -- 91,412,112(+) CTTTC(C/T)ttttt intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ARRDC3-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1623e212 CNV loss 25503493
nsv1145067 CNV deletion 24896259

Relevant External Links for ARRDC3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ARRDC3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ARRDC3-AS1 Gene

Disorders for ARRDC3-AS1 Gene

Relevant External Links for ARRDC3-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ARRDC3-AS1

No disorders were found for ARRDC3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ARRDC3-AS1 Gene

Publications for ARRDC3-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for ARRDC3-AS1 Gene

Sources for ARRDC3-AS1 Gene

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