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Aliases for ARRDC1-AS1 Gene

Subcategory (RNA class) for ARRDC1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ARRDC1-AS1 Gene

  • ARRDC1 Antisense RNA 1 2 3 4
  • C9orf37 3 4
  • Chromosome 9 Open Reading Frame 37 2
  • ARRDC1 Antisense Gene Protein 1 4
  • AD038 3

External Ids for ARRDC1-AS1 Gene

Previous HGNC Symbols for ARRDC1-AS1 Gene

  • C9orf37

Summaries for ARRDC1-AS1 Gene

Entrez Gene Summary for ARRDC1-AS1 Gene

  • This transcribed locus is thought to be non-coding. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jun 2014]

GeneCards Summary for ARRDC1-AS1 Gene

ARRDC1-AS1 (ARRDC1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ARRDC1-AS1 Gene

Genomics for ARRDC1-AS1 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for ARRDC1-AS1 Gene

Chromosome:
9
Start:
137,615,332 bp from pter
End:
137,618,906 bp from pter
Size:
3,575 bases
Orientation:
Minus strand

Genomic View for ARRDC1-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ARRDC1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ARRDC1-AS1 Gene

No data available for Regulatory Elements for ARRDC1-AS1 Gene

Proteins for ARRDC1-AS1 Gene

  • Protein details for ARRDC1-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9H2J1-CI037_HUMAN
    Recommended name:
    Uncharacterized protein ARRDC1-AS1
    Protein Accession:
    Q9H2J1
    Secondary Accessions:
    • Q17RM5
    • Q5T368

    Protein attributes for ARRDC1-AS1 Gene

    Size:
    176 amino acids
    Molecular mass:
    18048 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAG44726.1; Type=Frameshift; Positions=141; Evidence={ECO:0000305};

neXtProt entry for ARRDC1-AS1 Gene

Proteomics data for ARRDC1-AS1 Gene at MOPED

Post-translational modifications for ARRDC1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ARRDC1-AS1 Gene

Domains & Families for ARRDC1-AS1 Gene

Protein Domains for ARRDC1-AS1 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ARRDC1-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ARRDC1-AS1 Gene

Function for ARRDC1-AS1 Gene

Phenotypes for ARRDC1-AS1 Gene

GenomeRNAi human phenotypes for ARRDC1-AS1:
genes like me logo Genes that share phenotypes with ARRDC1-AS1: view

Animal Model Products

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate ARRDC1-AS1
    • Block miRNA regulation of ARRDC1-AS1 using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for ARRDC1-AS1

    In Situ Assay Products

    Flow Cytometry Products

    No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ARRDC1-AS1 Gene

    Localization for ARRDC1-AS1 Gene

    No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ARRDC1-AS1 Gene

    Pathways & Interactions for ARRDC1-AS1 Gene

    SuperPathways for ARRDC1-AS1 Gene

    No Data Available

    Interacting Proteins for ARRDC1-AS1 Gene

    Gene Ontology (GO) - Biological Process for ARRDC1-AS1 Gene

    None

    No data available for Pathways by source and SIGNOR curated interactions for ARRDC1-AS1 Gene

    Drugs & Compounds for ARRDC1-AS1 Gene

    No Compound Related Data Available

    Transcripts for ARRDC1-AS1 Gene

    miRNA Products

    • QIAGEN qRT-PCR Assays for microRNAs that regulate ARRDC1-AS1
      • Block miRNA regulation of ARRDC1-AS1 using miScript Target Protectors

      Inhibitory RNA Products

      • Predesigned siRNA for gene silencing in human,mouse,rat for ARRDC1-AS1

      Flow Cytometry Products

      Alternative Splicing Database (ASD) splice patterns (SP) for ARRDC1-AS1 Gene

      No ASD Table

      Relevant External Links for ARRDC1-AS1 Gene

      GeneLoc Exon Structure for
      ARRDC1-AS1
      ECgene alternative splicing isoforms for
      ARRDC1-AS1

      Expression for ARRDC1-AS1 Gene

      mRNA expression in normal human tissues for ARRDC1-AS1 Gene

      genes like me logo Genes that share expression patterns with ARRDC1-AS1: view

      Primer Products

      • QuantiTect SYBR Green Assays in human,mouse,rat
      • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
      • QuantiFast Probe-based Assays in human,mouse,rat

      In Situ Assay Products

      No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for ARRDC1-AS1 Gene

      Orthologs for ARRDC1-AS1 Gene

      This gene was present in the common ancestor of human and chimp.

      Orthologs for ARRDC1-AS1 Gene

      Organism Taxonomy Gene Similarity Type Details
      chimpanzee
      (Pan troglodytes)
      Mammalia C9H9orf37 35
      • 98.48 (n)
      • 96.02 (a)
      C9orf37 36
      • 96 (a)
      OneToOne
      Species with no ortholog for ARRDC1-AS1:
      • A. gosspyii yeast (Ashbya gossypii)
      • Actinobacteria (Mycobacterium tuberculosis)
      • African clawed frog (Xenopus laevis)
      • African malaria mosquito (Anopheles gambiae)
      • Alicante grape (Vitis vinifera)
      • alpha proteobacteria (Wolbachia pipientis)
      • amoeba (Dictyostelium discoideum)
      • Archea (Pyrococcus horikoshii)
      • baker's yeast (Saccharomyces cerevisiae)
      • barley (Hordeum vulgare)
      • beta proteobacteria (Neisseria meningitidis)
      • bread mold (Neurospora crassa)
      • chicken (Gallus gallus)
      • Chromalveolata (Phytophthora infestans)
      • common water flea (Daphnia pulex)
      • corn (Zea mays)
      • cow (Bos Taurus)
      • dog (Canis familiaris)
      • E. coli (Escherichia coli)
      • filamentous fungi (Aspergillus nidulans)
      • Firmicute bacteria (Streptococcus pneumoniae)
      • fission yeast (Schizosaccharomyces pombe)
      • fruit fly (Drosophila melanogaster)
      • green algae (Chlamydomonas reinhardtii)
      • honey bee (Apis mellifera)
      • K. lactis yeast (Kluyveromyces lactis)
      • lizard (Anolis carolinensis)
      • loblloly pine (Pinus taeda)
      • malaria parasite (Plasmodium falciparum)
      • medicago trunc (Medicago Truncatula)
      • moss (Physcomitrella patens)
      • mouse (Mus musculus)
      • oppossum (Monodelphis domestica)
      • orangutan (Pongo pygmaeus)
      • pig (Sus scrofa)
      • platypus (Ornithorhynchus anatinus)
      • rainbow trout (Oncorhynchus mykiss)
      • rat (Rattus norvegicus)
      • rice (Oryza sativa)
      • rice blast fungus (Magnaporthe grisea)
      • schistosome parasite (Schistosoma mansoni)
      • sea anemone (Nematostella vectensis)
      • sea squirt (Ciona intestinalis)
      • sea squirt (Ciona savignyi)
      • sea urchin (Strongylocentrotus purpuratus)
      • sorghum (Sorghum bicolor)
      • soybean (Glycine max)
      • stem rust fungus (Puccinia graminis)
      • sugarcane (Saccharum officinarum)
      • thale cress (Arabidopsis thaliana)
      • tomato (Lycopersicon esculentum)
      • toxoplasmosis (Toxoplasma gondii)
      • Trichoplax (Trichoplax adhaerens)
      • tropical clawed frog (Silurana tropicalis)
      • wheat (Triticum aestivum)
      • worm (Caenorhabditis elegans)
      • zebrafish (Danio rerio)

      Evolution for ARRDC1-AS1 Gene

      ENSEMBL:
      Gene Tree for ARRDC1-AS1 (if available)
      TreeFam:
      Gene Tree for ARRDC1-AS1 (if available)

      Paralogs for ARRDC1-AS1 Gene

      No data available for Paralogs for ARRDC1-AS1 Gene

      Variants for ARRDC1-AS1 Gene

      Sequence variations from dbSNP and Humsavar for ARRDC1-AS1 Gene

      SNP ID Clin Chr 09 pos Sequence Context AA Info Type MAF
      rs1128604 -- 137,616,187(-) TTCAC(C/T)ATGTT nc-transcript-variant
      rs2149562 -- 137,616,828(-) AGTGA(C/T)GGGAT intron-variant
      rs11137152 -- 137,616,189(+) catag(G/T)gaaac nc-transcript-variant
      rs71387853 -- 137,616,227(+) AAAAA(-/AAA)TAGCT intron-variant
      rs111543304 -- 137,616,963(+) GACAT(A/G)AGTGC intron-variant

      Variation tolerance for ARRDC1-AS1 Gene

      Residual Variation Intolerance Score: 44.22% of all genes are more intolerant (likely to be disease-causing)
      Gene Damage Index Score: 0.30; 6.65% of all genes are more intolerant (likely to be disease-causing)

      Relevant External Links for ARRDC1-AS1 Gene

      HapMap Linkage Disequilibrium report
      ARRDC1-AS1

      No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for ARRDC1-AS1 Gene

      Disorders for ARRDC1-AS1 Gene

      Relevant External Links for ARRDC1-AS1

      Atlas of Genetics and Cytogenetics in Oncology and Haematology:
      ARRDC1-AS1
      genes like me logo Genes that share disorders with ARRDC1-AS1: view

      No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ARRDC1-AS1 Gene

      Publications for ARRDC1-AS1 Gene

      1. DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray S.J. … Dunham I. (Nature 2004) 67
      2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 67
      3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 67
      4. Gene expression profiling in the human hypothalamus-pituitary-adrenal axis and full-length cDNA cloning. (PMID: 10931946) Hu R.-M. … Chen J.-L. (Proc. Natl. Acad. Sci. U.S.A. 2000) 67

      Products for ARRDC1-AS1 Gene

      • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
      • QIAGEN qRT-PCR Assays for microRNAs that regulate ARRDC1-AS1
        • QuantiTect SYBR Green Assays in human,mouse,rat
        • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
        • QuantiFast Probe-based Assays in human,mouse,rat
        • Predesigned siRNA for gene silencing in human,mouse,rat for ARRDC1-AS1
        • Block miRNA regulation of ARRDC1-AS1 using miScript Target Protectors

        Sources for ARRDC1-AS1 Gene

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