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Aliases for ARRDC1-AS1 Gene

Subcategory (RNA class) for ARRDC1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ARRDC1-AS1 Gene

  • ARRDC1 Antisense RNA 1 2 3 4
  • C9orf37 3 4
  • Chromosome 9 Open Reading Frame 37 2
  • ARRDC1 Antisense Gene Protein 1 4
  • AD038 3

External Ids for ARRDC1-AS1 Gene

Previous HGNC Symbols for ARRDC1-AS1 Gene

  • C9orf37

Summaries for ARRDC1-AS1 Gene

Entrez Gene Summary for ARRDC1-AS1 Gene

  • This transcribed locus is thought to be non-coding. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jun 2014]

GeneCards Summary for ARRDC1-AS1 Gene

ARRDC1-AS1 (ARRDC1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ARRDC1-AS1 Gene

Genomics for ARRDC1-AS1 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for ARRDC1-AS1 Gene

Start:
137,615,332 bp from pter
End:
137,618,906 bp from pter
Size:
3,575 bases
Orientation:
Minus strand

Genomic View for ARRDC1-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ARRDC1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ARRDC1-AS1 Gene

No data available for Regulatory Elements for ARRDC1-AS1 Gene

Proteins for ARRDC1-AS1 Gene

  • Protein details for ARRDC1-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9H2J1-CI037_HUMAN
    Recommended name:
    Uncharacterized protein ARRDC1-AS1
    Protein Accession:
    Q9H2J1
    Secondary Accessions:
    • Q17RM5
    • Q5T368

    Protein attributes for ARRDC1-AS1 Gene

    Size:
    176 amino acids
    Molecular mass:
    18048 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAG44726.1; Type=Frameshift; Positions=141; Evidence={ECO:0000305};

neXtProt entry for ARRDC1-AS1 Gene

Proteomics data for ARRDC1-AS1 Gene at MOPED

Post-translational modifications for ARRDC1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ARRDC1-AS1 Gene

Domains for ARRDC1-AS1 Gene

Protein Domains for ARRDC1-AS1 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ARRDC1-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ARRDC1-AS1 Gene

Function for ARRDC1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for ARRDC1-AS1 Gene

Localization for ARRDC1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ARRDC1-AS1 Gene

Pathways for ARRDC1-AS1 Gene

SuperPathways for ARRDC1-AS1 Gene

No Data Available

Interacting Proteins for ARRDC1-AS1 Gene

Gene Ontology (GO) - Biological Process for ARRDC1-AS1 Gene

None

No data available for Pathways by source for ARRDC1-AS1 Gene

Transcripts for ARRDC1-AS1 Gene

mRNA/cDNA for ARRDC1-AS1 Gene

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate ARRDC1-AS1
    • Block miRNA regulation of ARRDC1-AS1 using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for ARRDC1-AS1

    Primer Products

    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat

    Flow Cytometry Products

    Alternative Splicing Database (ASD) splice patterns (SP) for ARRDC1-AS1 Gene

    No ASD Table

    Relevant External Links for ARRDC1-AS1 Gene

    GeneLoc Exon Structure for
    ARRDC1-AS1
    ECgene alternative splicing isoforms for
    ARRDC1-AS1

    Expression for ARRDC1-AS1 Gene

    mRNA expression in normal human tissues for ARRDC1-AS1 Gene

    genes like me logo Genes that share expressions with ARRDC1-AS1: view

    In Situ Assay Products

    No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for ARRDC1-AS1 Gene

    Orthologs for ARRDC1-AS1 Gene

    This gene was present in the common ancestor of human and chimp.

    Orthologs for ARRDC1-AS1 Gene

    Organism Taxonomy Gene Similarity Type Details
    chimpanzee
    (Pan troglodytes)
    Mammalia C9H9orf37 35
    • 98.48 (n)
    • 96.02 (a)
    C9orf37 36
    • 96 (a)
    OneToOne
    Species with no ortholog for ARRDC1-AS1:
    • A. gosspyii yeast (Ashbya gossypii)
    • Actinobacteria (Mycobacterium tuberculosis)
    • African clawed frog (Xenopus laevis)
    • African malaria mosquito (Anopheles gambiae)
    • Alicante grape (Vitis vinifera)
    • alpha proteobacteria (Wolbachia pipientis)
    • amoeba (Dictyostelium discoideum)
    • Archea (Pyrococcus horikoshii)
    • baker's yeast (Saccharomyces cerevisiae)
    • barley (Hordeum vulgare)
    • beta proteobacteria (Neisseria meningitidis)
    • bread mold (Neurospora crassa)
    • chicken (Gallus gallus)
    • Chromalveolata (Phytophthora infestans)
    • common water flea (Daphnia pulex)
    • corn (Zea mays)
    • cow (Bos Taurus)
    • dog (Canis familiaris)
    • E. coli (Escherichia coli)
    • filamentous fungi (Aspergillus nidulans)
    • Firmicute bacteria (Streptococcus pneumoniae)
    • fission yeast (Schizosaccharomyces pombe)
    • fruit fly (Drosophila melanogaster)
    • green algae (Chlamydomonas reinhardtii)
    • honey bee (Apis mellifera)
    • K. lactis yeast (Kluyveromyces lactis)
    • lizard (Anolis carolinensis)
    • loblloly pine (Pinus taeda)
    • malaria parasite (Plasmodium falciparum)
    • medicago trunc (Medicago Truncatula)
    • moss (Physcomitrella patens)
    • mouse (Mus musculus)
    • oppossum (Monodelphis domestica)
    • orangutan (Pongo pygmaeus)
    • pig (Sus scrofa)
    • platypus (Ornithorhynchus anatinus)
    • rainbow trout (Oncorhynchus mykiss)
    • rat (Rattus norvegicus)
    • rice (Oryza sativa)
    • rice blast fungus (Magnaporthe grisea)
    • schistosome parasite (Schistosoma mansoni)
    • sea anemone (Nematostella vectensis)
    • sea squirt (Ciona intestinalis)
    • sea squirt (Ciona savignyi)
    • sea urchin (Strongylocentrotus purpuratus)
    • sorghum (Sorghum bicolor)
    • soybean (Glycine max)
    • stem rust fungus (Puccinia graminis)
    • sugarcane (Saccharum officinarum)
    • thale cress (Arabidopsis thaliana)
    • tomato (Lycopersicon esculentum)
    • toxoplasmosis (Toxoplasma gondii)
    • Trichoplax (Trichoplax adhaerens)
    • tropical clawed frog (Silurana tropicalis)
    • wheat (Triticum aestivum)
    • worm (Caenorhabditis elegans)
    • zebrafish (Danio rerio)

    Evolution for ARRDC1-AS1 Gene

    ENSEMBL:
    Gene Tree for ARRDC1-AS1 (if available)
    TreeFam:
    Gene Tree for ARRDC1-AS1 (if available)

    Paralogs for ARRDC1-AS1 Gene

    No data available for Paralogs for ARRDC1-AS1 Gene

    Variants for ARRDC1-AS1 Gene

    Sequence variations from dbSNP and Humsavar for ARRDC1-AS1 Gene

    SNP ID Clin Chr 09 pos Sequence Context AA Info Type MAF
    rs1128604 -- 137,616,187(-) TTCAC(C/T)ATGTT missense, reference, nc-transcript-variant
    rs2149562 -- 137,616,828(-) AGTGA(C/T)GGGAT intron-variant
    rs11137152 -- 137,616,189(+) catag(G/T)gaaac reference, missense, nc-transcript-variant
    rs71387853 -- 137,616,227(+) AAAAA(-/AAA)TAGCT intron-variant
    rs111543304 -- 137,616,963(+) GACAT(A/G)AGTGC intron-variant

    Relevant External Links for ARRDC1-AS1 Gene

    HapMap Linkage Disequilibrium report
    ARRDC1-AS1

    No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for ARRDC1-AS1 Gene

    Disorders for ARRDC1-AS1 Gene

    No disorders were found for ARRDC1-AS1 Gene.

    No data available for UniProtKB/Swiss-Prot for ARRDC1-AS1 Gene

    Publications for ARRDC1-AS1 Gene

    1. Gene expression profiling in the human hypothalamus-pituitary-adrenal axis and full-length cDNA cloning. (PMID: 10931946) Hu R.-M. … Chen J.-L. (Proc. Natl. Acad. Sci. U.S.A. 2000) 3 4
    2. DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray S.J. … Dunham I. (Nature 2004) 3 4
    3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

    Products for ARRDC1-AS1 Gene

    • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
    • QIAGEN qRT-PCR Assays for microRNAs that regulate ARRDC1-AS1
      • QuantiTect SYBR Green Assays in human,mouse,rat
      • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
      • QuantiFast Probe-based Assays in human,mouse,rat
      • Predesigned siRNA for gene silencing in human,mouse,rat for ARRDC1-AS1
      • Block miRNA regulation of ARRDC1-AS1 using miScript Target Protectors
      • antibodies-online proteins for ARRDC1-AS1
      • antibodies-online antibodies for ARRDC1-AS1
      • antibodies-online kits for ARRDC1-AS1

      Sources for ARRDC1-AS1 Gene

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