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Aliases for ARRDC1-AS1 Gene

Subcategory (RNA class) for ARRDC1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ARRDC1-AS1 Gene

  • ARRDC1 Antisense RNA 1 2 3 4 5
  • C9orf37 3 4
  • Chromosome 9 Open Reading Frame 37 2
  • ARRDC1 Antisense Gene Protein 1 4
  • AD038 3

External Ids for ARRDC1-AS1 Gene

Previous HGNC Symbols for ARRDC1-AS1 Gene

  • C9orf37

Summaries for ARRDC1-AS1 Gene

Entrez Gene Summary for ARRDC1-AS1 Gene

  • This transcribed locus is thought to be non-coding. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jun 2014]

GeneCards Summary for ARRDC1-AS1 Gene

ARRDC1-AS1 (ARRDC1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ARRDC1-AS1 Gene

Genomics for ARRDC1-AS1 Gene

Regulatory Elements for ARRDC1-AS1 Gene

Enhancers for ARRDC1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09F137309 1.4 FANTOM5 Ensembl ENCODE 13.8 +303.1 303125 12.7 HDGF PKNOX1 CREB3L1 ARID4B ZNF48 GLIS2 FOS ZHX2 REST SMARCA4 DPH7 NOXA1 ARRDC1-AS1 SNAPC4 EXD3 ANAPC2 CCDC183-AS1 NRARP PNPLA7 GC09M137332
GH09F137280 0.2 ENCODE 13.8 +337.8 337843 0.3 RING1 CTCF KDM1A RAD21 DPH7 ARRDC1-AS1 SNAPC4 ANAPC2 CCDC183-AS1 TOR4A GC09P137287
GH09F137076 0.2 ENCODE 13.8 +541.2 541233 1.8 ZNF48 GLIS2 ZNF143 EGR2 ZNF263 SP5 USF2 SP1 KLF16 GLIS1 UAP1L1 DPH7 ARRDC1-AS1 SNAPC4 ANAPC2 CCDC183-AS1 PIR60888
GH09F136613 1.4 FANTOM5 Ensembl ENCODE 13.8 +998.0 998045 14.5 HDGF PKNOX1 MLX ZFP64 SIN3A ARID4B DMAP1 YY1 FOS DEK DPH7 ARRDC1-AS1 SNAPC4 ANAPC2 NOTCH1 CCDC183-AS1 FUT7 EGFL7 SEC16A ABCA2
GH09F137169 0.6 ENCODE 13.8 +449.5 449546 1.3 INSM2 ZNF76 KLF17 SIN3A GLIS2 RCOR1 ZNF263 REST MTA1 GLIS1 DPH7 ARRDC1-AS1 TPRN GRIN1 MAN1B1 SNAPC4 ANAPC2 ENSG00000199411 CCDC183-AS1 SSNA1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around ARRDC1-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for ARRDC1-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001734500 -294 2801 CREB3L1 WRNIP1 ARID4B SIN3A DMAP1 YY1 ZNF207 DEK PAF1 SP3

Genomic Location for ARRDC1-AS1 Gene

Chromosome:
9
Start:
137,615,332 bp from pter
End:
137,618,906 bp from pter
Size:
3,575 bases
Orientation:
Minus strand

Genomic View for ARRDC1-AS1 Gene

Genes around ARRDC1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ARRDC1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ARRDC1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ARRDC1-AS1 Gene

Proteins for ARRDC1-AS1 Gene

  • Protein details for ARRDC1-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9H2J1-CI037_HUMAN
    Recommended name:
    Uncharacterized protein ARRDC1-AS1
    Protein Accession:
    Q9H2J1
    Secondary Accessions:
    • Q17RM5
    • Q5T368

    Protein attributes for ARRDC1-AS1 Gene

    Size:
    176 amino acids
    Molecular mass:
    18048 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAG44726.1; Type=Frameshift; Positions=141; Evidence={ECO:0000305};

neXtProt entry for ARRDC1-AS1 Gene

Post-translational modifications for ARRDC1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ARRDC1-AS1 Gene

Domains & Families for ARRDC1-AS1 Gene

Protein Domains for ARRDC1-AS1 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ARRDC1-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ARRDC1-AS1 Gene

Function for ARRDC1-AS1 Gene

Phenotypes for ARRDC1-AS1 Gene

genes like me logo Genes that share phenotypes with ARRDC1-AS1: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ARRDC1-AS1 Gene

Localization for ARRDC1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ARRDC1-AS1 Gene

Pathways & Interactions for ARRDC1-AS1 Gene

SuperPathways for ARRDC1-AS1 Gene

No Data Available

Interacting Proteins for ARRDC1-AS1 Gene

Gene Ontology (GO) - Biological Process for ARRDC1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ARRDC1-AS1 Gene

Transcripts for ARRDC1-AS1 Gene

mRNA/cDNA for ARRDC1-AS1 Gene

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ARRDC1-AS1 Gene

No ASD Table

Relevant External Links for ARRDC1-AS1 Gene

GeneLoc Exon Structure for
ARRDC1-AS1
ECgene alternative splicing isoforms for
ARRDC1-AS1

Expression for ARRDC1-AS1 Gene

mRNA expression in normal human tissues for ARRDC1-AS1 Gene

genes like me logo Genes that share expression patterns with ARRDC1-AS1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for ARRDC1-AS1 Gene

Orthologs for ARRDC1-AS1 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for ARRDC1-AS1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C9H9orf37 34
  • 98.48 (n)
C9orf37 35
  • 96 (a)
OneToOne
Species where no ortholog for ARRDC1-AS1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ARRDC1-AS1 Gene

ENSEMBL:
Gene Tree for ARRDC1-AS1 (if available)
TreeFam:
Gene Tree for ARRDC1-AS1 (if available)

Paralogs for ARRDC1-AS1 Gene

No data available for Paralogs for ARRDC1-AS1 Gene

Variants for ARRDC1-AS1 Gene

Sequence variations from dbSNP and Humsavar for ARRDC1-AS1 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs1006498 -- 137,620,374(+) TTCAC(C/T)CTGTG intron-variant, upstream-variant-2KB
rs1045777 -- 137,618,103(-) AACTA(C/T)CTACA nc-transcript-variant, upstream-variant-2KB
rs111309993 -- 137,618,194(+) GGCCT(A/G)TGAGT intron-variant, upstream-variant-2KB
rs11137152 -- 137,616,189(+) catag(G/T)gaaac nc-transcript-variant
rs11137153 -- 137,618,926(+) GGCGC(A/G)GGCGC upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for ARRDC1-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv13012n54 CNV loss 21841781
nsv1075291 CNV deletion 25765185
nsv1144307 CNV deletion 24896259
nsv616023 CNV loss 21841781
nsv831762 CNV loss 17160897
nsv831763 CNV loss 17160897
nsv951212 CNV deletion 24416366

Variation tolerance for ARRDC1-AS1 Gene

Residual Variation Intolerance Score: 44.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.30; 6.65% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ARRDC1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ARRDC1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ARRDC1-AS1 Gene

Disorders for ARRDC1-AS1 Gene

Relevant External Links for ARRDC1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ARRDC1-AS1

No disorders were found for ARRDC1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ARRDC1-AS1 Gene

Publications for ARRDC1-AS1 Gene

  1. DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray S.J. … Dunham I. (Nature 2004) 3 4 64
  2. Gene expression profiling in the human hypothalamus-pituitary-adrenal axis and full-length cDNA cloning. (PMID: 10931946) Hu R.-M. … Chen J.-L. (Proc. Natl. Acad. Sci. U.S.A. 2000) 3 4 64
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4 64
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for ARRDC1-AS1 Gene

Sources for ARRDC1-AS1 Gene

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