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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

ARPC1B Gene

protein-coding   GIFtS: 64
GCID: GC07P098971

actin related protein 2/3 complex, subunit 1B, 41kDa

(Previous names: actin related protein 2/3 complex, subunit 1B (41 kD) )
 Explore 8 diseases affiliated with
ARPC1B via our new
 Human Malady Compendium 
Biological research products
for ARPC1B
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Actin Related Protein 2/3 Complex, Subunit 1B, 41kDa1 2     Arp2/3 Complex 41 KDa Subunit2 3
ARC411 2 3 5     Actin Related Protein 2/3 Complex, Subunit 1B (41 KD)1
P41-ARC1     Actin-Related Protein 2/3 Complex Subunit 1B2
P40-ARC1     ARP2/3 Protein Complex Subunit P412

External Ids:    HGNC: 7041   Entrez Gene: 100952   Ensembl: ENSG000001304297   OMIM: 6042235   UniProtKB: O151433   

Export aliases for ARPC1B gene to outside databases

Previous GC identifers: GC07P097507 GC07P098569 GC07P098583 GC07P098616 GC07P098705 GC07P098810 GC07P098937 GC07P093608


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for ARPC1B:
This gene encodes one of seven subunits of the human Arp2/3 protein complex. This subunit is a member of the SOP2
family of proteins and is most similar to the protein encoded by gene ARPC1A. The similarity between these two
proteins suggests that they both may function as p41 subunit of the human Arp2/3 complex that has been implicated in
the control of actin polymerization in cells. It is possible that the p41 subunit is involved in assembling and
maintaining the structure of the Arp2/3 complex. Multiple versions of the p41 subunit may adapt the functions of the
complex to different cell types or developmental stages. This protein also has a role in centrosomal homeostasis by
being an activator and substrate of the Aurora A kinase. (provided by RefSeq, Mar 2011)

UniProtKB/Swiss-Prot: ARC1B_HUMAN, O15143
Function: Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and
together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks

Gene Wiki entry for ARPC1B


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000007.13  NC_018918.1  NT_007933.15  NT_079595.2  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the ARPC1B gene promoter:
         Nkx3-1   STAT1   Nkx3-1 v4   STAT1beta   Nkx3-1 v1   STAT1alpha   MZF-1   Nkx3-1 v2   Nkx3-1 v3   MRF-2   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmids (see all 5): ARPC1B promoter sequence
   Search SABiosciences Chromatin IP Primers for ARPC1B

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ARPC1B


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 7q22.1   Ensembl cytogenetic band:  7q22.1   HGNC cytogenetic band: 7q

ARPC1B Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ARPC1B gene location

GeneLoc information about chromosome 7         GeneLoc Exon Structure

GeneLoc location for GC07P098971:  view genomic region     (about GC identifiers)

Start:
98,971,872 bp from pter      End:
98,992,424 bp from pter
Size:
20,553 bases      Orientation:
plus strand

1 alternative location:
Chr7+,CRA_TCAG 98,332,102-98,352,197     

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: ARC1B_HUMAN, O15143 (See protein sequence)
Recommended Name: Actin-related protein 2/3 complex subunit 1B  
Size: 372 amino acids; 40950 Da
Subunit: Component of the Arp2/3 complex composed of ARP2, ARP3, ARPC1B/p41-ARC, ARPC2/p34-ARC, ARPC3/p21-ARC,
ARPC4/p20-ARC and ARPC5/p16-ARC
Subcellular location: Cytoplasm, cytoskeleton
Secondary accessions: Q9BU00

Explore the universe of human proteins at neXtProt for ARPC1B: NX_O15143

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_O15143

  • ARPC1B Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins: NP_005711.1  
    ENSEMBL proteins: 
     ENSP00000413173   ENSP00000398620   ENSP00000252725   ENSP00000410238   ENSP00000413067  
     ENSP00000408758   ENSP00000403324   ENSP00000398110   ENSP00000403211   ENSP00000388802  
     ENSP00000389631   ENSP00000412164   ENSP00000408508   ENSP00000399955  

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    Uscn Proteins for ARPC1B

    Gene Ontology (GO): 4 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005737cytoplasm IEA--
    GO:0005856cytoskeleton ----
    GO:0005885Arp2/3 protein complex TAS9230079
    GO:0015629actin cytoskeleton TAS9230079


    ARPC1B for ontologies           About GeneDecksing



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    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    ARPC1B for domains           About GeneDecksing

    4 InterPro domains/families:
     IPR017383 ARPC2/3_su1
     IPR001680 WD40_repeat
     IPR017986 WD40_repeat_dom
     IPR015943 WD40/YVTN_repeat-like_dom

    Graphical View of Domain Structure for InterPro Entry O15143

    ProtoNet protein and cluster: O15143

    1 Blocks protein family: IPB001680 G-protein beta WD-40 repeat signature

    UniProtKB/Swiss-Prot: ARC1B_HUMAN, O15143
    Similarity: Belongs to the WD repeat ARPC1 family
    Similarity: Contains 6 WD repeats


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Function Summary:

         UniProtKB/Swiss-Prot: ARC1B_HUMAN, O15143
    Function: Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and
    together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks

    miRNA
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    miRTarBase miRNAs that target ARPC1B:
    hsa-mir-124 (MIRT002566)

    OriGene 3'-UTR Clone: ARPC1B
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    8/9 QIAGEN miScript miRNA Assays for microRNAs that regulate ARPC1B (see all 9):
    hsa-miR-1206 hsa-miR-634 hsa-miR-545 hsa-miR-124 hsa-miR-3658 hsa-miR-127-5p hsa-miR-330-3p hsa-miR-506
    SwitchGear 3'UTR luciferase reporter plasmidARPC1B 3' UTR sequence
    Inhib. RNA
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    Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003779actin binding IEA--
    GO:0005200structural constituent of cytoskeleton TAS9230079


    ARPC1B for ontologies           About GeneDecksing


    1 GenomeRNAi human phenotype for ARPC1B:
     Decreased focal adhesion (FA)  

    Animal Models:
         1 MGI mutant phenotype (inferred from 1 allele(MGI details for Arpc1b):
     homeostasis/metabolism 

    ARPC1B for phenotypes           About GeneDecksing


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways - 5/16 super-pathways (see all 16About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1Cell adhesion_Integrin-mediated cell adhesion and migration
    Cell adhesion_Integrin-mediated cell adhesion and migration1.00
    Cytoskeleton remodeling_Integrin outside-in signaling0.37
    Cell adhesion Integrin-mediated cell adhesion and migration1.00
    Cytoskeleton remodeling Integrin outside-in signaling0.37
    Cytoskeleton remodeling_Regulation of actin cytoskeleton by Rho GTPases0.49
    Cytoskeleton remodeling Fibronectin-binding integrins in cell motility0.32
    Cytoskeleton remodeling Regulation of actin cytoskeleton by Rho GTPases0.49
    Cytoskeleton remodeling_Fibronectin-binding integrins in cell motility0.32
    2G-protein signaling_RAC1 in cellular process
    G-protein signaling_RAC1 in cellular process1.00
    Cytoskeleton remodeling CDC42 in cellular processes0.37
    G-protein signaling RAC1 in cellular process1.00
    RAC1 signaling pathway0.34
    Cytoskeleton remodeling_CDC42 in cellular processes0.37
    CDC42 signaling events0.17
    3Cytoskeleton remodeling Slit-Robo signaling
    Cytoskeleton remodeling Slit-Robo signaling1.00
    Cell adhesion_Cadherin-mediated cell adhesion0.28
    Development_Slit-Robo signaling0.92
    Cell adhesion Cadherin-mediated cell adhesion0.28
    4Immune response CD16 signaling in NK cells
    Immune response CD16 signaling in NK cells1.00
    Immune response_Role of DAP12 receptors in NK cells0.32
    Immune response_CD16 signaling in NK cells0.99
    Immune response Role of DAP12 receptors in NK cells0.32
    5Immune response _CCR3 signaling in eosinophils
    Immune response _CCR3 signaling in eosinophils1.00
    Inhibitory action of Lipoxins on neutrophil migration0.51
    Immune response CCR3 signaling in eosinophils1.00

    Pathway sources
    See GeneCards unified pathways
    Show all pathways

    5/13 EMD Millipore Pathways for ARPC1B (see all 13)
        Cytoskeleton remodeling Integrin outside-in signaling
    Immune response CD16 signaling in NK cells
    Cytoskeleton remodeling CDC42 in cellular processes
    Cytoskeleton remodeling Fibronectin-binding integrins in cell motility
    Immune response Role of DAP12 receptors in NK cells

    2 Downloadable PowerPoint Slides of QIAGEN Pathway Central Maps for ARPC1B
        THC Differentiation Pathway
    Salmonella Infection

    5/14 GeneGo (Thomson Reuters) Pathways for ARPC1B (see all 14)
        Cytoskeleton remodeling CDC42 in cellular processes
    Immune response CD16 signaling in NK cells
    Cytoskeleton remodeling Fibronectin-binding integrins in cell motility
    Neurophysiological process Receptor-mediated axon growth repulsion
    Cytoskeleton remodeling Integrin outside-in signaling

    5 BioSystems Pathways for ARPC1B 
        Pathogenic Escherichia coli infection
    B Cell Receptor Signaling Pathway
    RAC1 signaling pathway
    ErbB1 downstream signaling
    CDC42 signaling events


    5         Kegg Pathways  (Kegg details for ARPC1B):
        Fc gamma R-mediated phagocytosis
    Regulation of actin cytoskeleton
    Bacterial invasion of epithelial cells
    Pathogenic Escherichia coli infection
    Shigellosis


    ARPC1B for pathways           About GeneDecksing

    Interactions:

        SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for ARPC1B

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    5/38 Interacting proteins for ARPC1B (O151432, 3 ENSP000002527254) via UniProtKB, MINT, STRING, and/or I2D (see all 38)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    WASP427682, 3, ENSP000003658914MINT-14050 I2D: score=2 STRING: ENSP00000365891
    WASLO004012, 3, ENSP000002230234MINT-15597 I2D: score=1 STRING: ENSP00000223023
    ACTR2P611603, ENSP000003672204I2D: score=2 STRING: ENSP00000367220
    ACTR3BQ9P1U13, ENSP000002560014I2D: score=2 STRING: ENSP00000256001
    PAK1Q131533, ENSP000002785684I2D: score=2 STRING: ENSP00000278568
    About this table

    Gene Ontology (GO): 2 biological process terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006928cellular component movement TAS9230079
    GO:0030833regulation of actin filament polymerization IEA--


    ARPC1B for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for ARPC1B

    2 DrugBank Compounds for ARPC1B    About this table
    CompoundSynonyms CAS #TypeActionsPubMed Ids
    (2S)-2-(3-bromophenyl)-3-(5-chloro-2-hydroxyphenyl)-1,3-thiazolidin-4-one-- --target--10592235
    N-[2-(2-methyl-1H-indol-3-yl)ethyl]thiophene-2-carboxamide-- --target--10592235

    Search CenterWatch for drugs/clinical trials and news about ARPC1B / ARC1B 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for ARPC1B gene: 
    NM_005720.3  

    Unigene Cluster for ARPC1B:

    Actin related protein 2/3 complex, subunit 1B, 41kDa
    Hs.489284  [show with all ESTs]
    Unigene Representative Sequence: BM907771
    18/23 Ensembl transcripts including schematic representations, and UCSC links where relevant (see all 23):
    ENST00000443222 ENST00000414376 ENST00000252725(uc003upz.3) ENST00000484600
    ENST00000455009 ENST00000484375 ENST00000418347 ENST00000429246 ENST00000417330
    ENST00000431816 ENST00000427217 ENST00000458033 ENST00000451682 ENST00000451694
    ENST00000474880 ENST00000445924 ENST00000432343 ENST00000493403

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    hsa-miR-1206 hsa-miR-634 hsa-miR-545 hsa-miR-124 hsa-miR-3658 hsa-miR-127-5p hsa-miR-330-3p hsa-miR-506
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    Additional cDNA sequence: 

    AF006084.1 AK314818.1 AY007111.1 BC002562.2 BC002988.1 BC007555.1 

    24/34 DOTS entries (see all 34):

    DT.100885268  DT.448721  DT.100885265  DT.97857993  DT.100885252  DT.100885251  DT.100885257  DT.91724215 
    DT.121072413  DT.97860817  DT.100885240  DT.91768110  DT.100885249  DT.92032340  DT.100885239  DT.100039258 
    DT.95229983  DT.121072278  DT.121072158  DT.100843492  DT.121072351  DT.434580  DT.95229923  DT.100760456 

    24/1160 AceView cDNA sequences (see all 1160):

    BG685816 AI672103 BM782586 AA313239 BM767716 BQ669457 CR607425 BG489270 
    AF006084 AI955698 BQ008759 BG750483 BQ924626 BX438949 AI650428 BC002562 
    BU501205 CD743069 AA356777 AA306535 BM836004 BQ668491 BG577041 BQ670574 

    GeneLoc Exon Structure

    5/21 Alternative Splicing Database (ASD) splice patterns (SP) for ARPC1B (see all 21)    About this scheme

    ExUns: 1a · 1b · 1c ^ 2a · 2b · 2c ^ 3 ^ 4a · 4b · 4c ^ 5 ^ 6a · 6b ^ 7 ^ 8a · 8b ^ 9a · 9b ^ 10a · 10b ^ 11a · 11b · 11c ^ 12a · 12b · 12c ·
    SP1:                                      -     -     -     -           -     -                                   -     -                                       
    SP2:                                      -     -     -     -           -     -                                   -     -                       -     -     -   
    SP3:                                                        -           -     -                                   -     -                                       
    SP4:                                      -     -                       -     -                                   -     -                                       
    SP5:                                      -     -           -           -     -                                   -     -                                       

    ExUns: 12d · 12e ^ 13 ^ 14a · 14b · 14c ^ 15a · 15b · 15c · 15d ^ 16a · 16b · 16c
    SP1:                                                        -     -               
    SP2:                                                                              
    SP3:                                                                              
    SP4:                                                                              
    SP5:                                                                              


    ECgene alternative splicing isoforms for ARPC1B

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    ARPC1B expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: AACTGCTTCA

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image

    ARPC1B expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table
    3 LifeMap In Vivo Development Anatomical Compartments/Cells 
    Tissue Anatomical Compartment CellCategory (developmental path)
    Reproductive SystemMesonephrosMesonephric cellsReproductive System
    KidneyMetanephrosKidney
    Reproductive SystemMesonephrosReproductive System
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization

    See ARPC1B Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for ARPC1B

    SOURCE GeneReport for Unigene cluster: Hs.489284
        SABiosciences Expression via Pathway-Focused PCR Array including ARPC1B: 
              Cytoskeleton Regulators in human mouse rat

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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of eukaryotes.

    Orthologs for ARPC1B gene from 8/29 species (see all 29)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Arpc1b1 , 5 actin related protein 2/3 complex, subunit 1B1, 5 88.8(n)1
    97.31(a)1
      5 (85.03 cM)5
    118671  NM_023142.21  NP_075631.21 
     1451142155 
    chicken
    (Gallus gallus)
    Aves ARPC1B1 actin related protein 2/3 complex, subunit 1B, 41kDa 85.09(n)
    88.62(a)
      416490  NM_001030632.1  NP_001025803.1 
    African clawed frog
    (Xenopus laevis)
    Amphibia arx-3and3n122-prov2 actin related protein 2/3 complex, subunit 1B (41 kDa) 75.92(n)    BC045043.1 
    zebrafish
    (Danio rerio)
    Actinopterygii BC053229.12   -- 78.86(n)    BC053229.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta Sop23 actin filament-based process actin binding 50(a)   34D6   --
    worm
    (Caenorhabditis elegans)
    Secernentea arx-36
    ARp2/3 compleX component family member (arx-3)
    50(a)
    possible ortholog
    III(12052328-12058358)
    thale cress
    (Arabidopsis thaliana)
    eudicotyledons ARPC1B1 actin-related protein C1B 50.46(n)
    44.17(a)
      817687  NM_128686.2  NP_180688.1 
    rice
    (Oryza sativa)
    Liliopsida Os.184242 Oryza sativa (japonica cultivar-group) cDNA clone0 more 70.3(n)    AK073919.1 


    ENSEMBL Gene Tree for ARPC1B (if available)
    TreeFam Gene Tree for ARPC1B (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for ARPC1B gene
    ARPC1A2  
    2 SIMAP similar genes for ARPC1B using alignment to 15 protein entries:     ARC1B_HUMAN (see all proteins):
    ARPC1A    SEH1L

    ARPC1B for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/375 NCBI SNPs in ARPC1B are shown (see all 375    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 7 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1139048741,2
    C,--98330176(+) GAGGTG/TACCAG 1 -- us2k12Minor allele frequency- T:0.04WA 120
    rs733955951,2
    C,--98330193(+) GGTTAC/TTTCTC 1 -- us2k12Minor allele frequency- T:0.04WA 120
    rs412798451,2
    --98351712(+) TCCAAC/TCCAGC 1 -- ds50010--------
    rs47295341,2
    C,F,A,H--98351833(+) CCGTTC/TTGCCT 1 -- ds50018Minor allele frequency- T:0.00NS EA NA 626
    rs117649551,2
    H--98351927(+) GGGAAA/GCGGGG 1 -- ds50010--------
    rs10628891,2
    C--98351974(+) TGTTTC/TTGGGG 1 -- ds5001 ese32Minor allele frequency- T:0.25NA 4
    rs7047981,2
    C,F,A,H,--98352026(+) GAGGGA/G/TACAGA 1 -- ds5001 trp39MN NA WA CSA 432
    rs10449361,2
    C,A,H--98352044(+) CTTTTC/TTTACC 1 -- ds50015Minor allele frequency- T:0.00NS EA NA 422
    rs10449791,2
    C,H--98352074(+) TTTTTC/TTTAAA 1 -- ut31 trp34Minor allele frequency- T:0.00NS EA 420
    rs2007894671,2
    C--98352094(+) TTATTA/GAAAAA 1 -- ut310--------

    HapMap Linkage Disequilibrium report for ARPC1B (98971872 - 98992424 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 2 variations for ARPC1B
         2 CNVs: 4547 4548

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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    ARPC1B for disorders           About GeneDecksing

    OMIM gene information: 604223    OMIM disorders: --

    8 diseases for ARPC1B:    About MalaCards
    chronic lymphocytic leukemia    lymphocytic leukemia    shigellosis    choroiditis
    gastric cancer    leukemia    melanoma    malaria


    Export disorders for ARPC1B gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for ARPC1B gene, integrated from 9 sources (see all 39):
    (articles sorted by number of sources associating them with ARPC1B)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. The human Arp2/3 complex is composed of evolutionarily conserved subunits and is localized to cellular regions of dynamic actin filament assembly. (PubMed id 9230079)1, 2, 3 Welch M.D.... Mitchison T.J. (1997)
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    3. Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides. (PubMed id 12665801)1, 2 Gevaert K.... Vandekerckhove J. (2003)
    4. The DNA sequence of human chromosome 7. (PubMed id 12853948)1, 2 Hillier L.W.... Wilson R.K. (2003)
    5. Reconstitution of human Arp2/3 complex reveals critical roles of individual subunits in complex structure and activity. (PubMed id 11741539)1, 2 Gournier H.... Welch M.D. (2001)
    6. Mammalian actin-related protein 2/3 complex localizes to regions of lamellipodial protrusion and is composed of evolutionarily conserved proteins. (PubMed id 9359840)1, 3 Machesky L.M.... Segal A.W. (1997)
    7. p41-Arc subunit of human Arp2/3 complex is a p21-activated kinase-1-interacting substrate. (PubMed id 14749719)1, 9 Vadlamudi R.K....Kumar R. (2004)
    8. A census of human soluble protein complexes. (PubMed id 22939629)1 Havugimana P.C....Emili A. (2012)
    9. A high-throughput approach for measuring temporal chan ges in the interactome. (PubMed id 22863883)1 Kristensen A.R....Foster L.J. (2012)
    10. Initial characterization of the human central proteome. (PubMed id 21269460)2 Burkard T.R.... Colinge J. (2011)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 10095 HGNC: 704 AceView: ARPC1B Ensembl:ENSG00000130429 euGenes: HUgn10095
    ECgene: ARPC1B Kegg: 10095 H-InvDB: ARPC1B

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for ARPC1B Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for ARPC1B gene:
    Search GeneIP for patents involving ARPC1B

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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