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Aliases for ARNTL2-AS1 Gene

Subcategory (RNA class) for ARNTL2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ARNTL2-AS1 Gene

  • ARNTL2 Antisense RNA 1 2 3 5

External Ids for ARNTL2-AS1 Gene

Previous GeneCards Identifiers for ARNTL2-AS1 Gene

  • GC12M027543

Summaries for ARNTL2-AS1 Gene

GeneCards Summary for ARNTL2-AS1 Gene

ARNTL2-AS1 (ARNTL2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ARNTL2-AS1 Gene

Genomics for ARNTL2-AS1 Gene

Regulatory Elements for ARNTL2-AS1 Gene

Enhancers for ARNTL2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12G027588 1.5 FANTOM5 Ensembl ENCODE dbSUPER 11.4 -145.7 -145669 8.4 CTCF ZNF146 FOXA2 TAF1 MAX BMI1 RAD21 YY1 GATA3 POLR2A PPFIBP1 ARNTL2-AS1 SMCO2 LOC100506578 ENSG00000248100
GH12G027570 1.6 FANTOM5 Ensembl ENCODE dbSUPER 10.6 -127.1 -127110 6.8 JUN MAX RAD21 YY1 FOSL1 GATA2 ZNF366 HNF4G FOS PRDM10 PPFIBP1 SMCO2 ARNTL2-AS1 STK38L ENSG00000248100 LOC100506578
GH12G027613 1.4 Ensembl ENCODE dbSUPER 11.1 -170.7 -170713 6.9 PKNOX1 KLF17 SIN3A FEZF1 GATA2 ZNF366 ZSCAN5C SCRT2 RCOR1 FOS SMCO2 ARNTL2-AS1 REP15 PPFIBP1 ENSG00000256377 ENSG00000256557 GC12P027690
GH12G027579 1.2 Ensembl ENCODE dbSUPER 11.4 -135.4 -135366 5.2 CTCF ESRRA ZSCAN4 ZNF133 MAX RAD21 ZNF664 ZFHX2 HNF4G SMC3 ARNTL2-AS1 PPFIBP1 SMCO2 LOC100506578 ENSG00000248100
GH12G027540 1.2 Ensembl ENCODE dbSUPER 11.2 -95.7 -95712 2.9 GATAD2A FOXA2 HLF FOXA3 CEBPB ELF4 CEBPG ZNF384 FOXA1 TBX3 SMCO2 ARNTL2-AS1 ENSG00000248100 PPFIBP1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ARNTL2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for ARNTL2-AS1 Gene

Chromosome:
12
Start:
27,389,789 bp from pter
End:
27,446,634 bp from pter
Size:
56,846 bases
Orientation:
Minus strand

Genomic View for ARNTL2-AS1 Gene

Genes around ARNTL2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ARNTL2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ARNTL2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ARNTL2-AS1 Gene

Proteins for ARNTL2-AS1 Gene

Post-translational modifications for ARNTL2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ARNTL2-AS1 Gene

Domains & Families for ARNTL2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ARNTL2-AS1 Gene

Function for ARNTL2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ARNTL2-AS1 Gene

Localization for ARNTL2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ARNTL2-AS1 Gene

Pathways & Interactions for ARNTL2-AS1 Gene

SuperPathways for ARNTL2-AS1 Gene

No Data Available

Interacting Proteins for ARNTL2-AS1 Gene

Gene Ontology (GO) - Biological Process for ARNTL2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ARNTL2-AS1 Gene

Drugs & Compounds for ARNTL2-AS1 Gene

No Compound Related Data Available

Transcripts for ARNTL2-AS1 Gene

mRNA/cDNA for ARNTL2-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ARNTL2-AS1 Gene

No ASD Table

Relevant External Links for ARNTL2-AS1 Gene

GeneLoc Exon Structure for
ARNTL2-AS1
ECgene alternative splicing isoforms for
ARNTL2-AS1

Expression for ARNTL2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ARNTL2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for ARNTL2-AS1 Gene

This gene is overexpressed in Esophagus - Mucosa (x7.9).
genes like me logo Genes that share expression patterns with ARNTL2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ARNTL2-AS1 Gene

Orthologs for ARNTL2-AS1 Gene

Evolution for ARNTL2-AS1 Gene

ENSEMBL:
Gene Tree for ARNTL2-AS1 (if available)
TreeFam:
Gene Tree for ARNTL2-AS1 (if available)

No data available for Orthologs for ARNTL2-AS1 Gene

Paralogs for ARNTL2-AS1 Gene

No data available for Paralogs for ARNTL2-AS1 Gene

Variants for ARNTL2-AS1 Gene

Sequence variations from dbSNP and Humsavar for ARNTL2-AS1 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1000033247 -- 27,393,070(+) CTGAC(A/G)TAAGT intron-variant
rs1000037848 -- 27,397,258(+) GTAGA(A/G)ATGGG intron-variant
rs1000049656 -- 27,404,468(+) AGTAG(A/G)TAGAA intron-variant
rs1000106382 -- 27,392,703(+) ATAAA(A/G)CAGCC intron-variant
rs1000111667 -- 27,438,855(+) ATGAG(A/G)ATGAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ARNTL2-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1406n100 CNV gain 25217958
dgv2417n54 CNV gain 21841781
dgv271e199 CNV deletion 23128226
esv2745664 CNV deletion 23290073
esv3628933 CNV gain 21293372
nsv436825 CNV insertion 17901297
nsv521872 CNV gain 19592680
nsv650 CNV insertion 18451855
nsv832357 CNV gain 17160897

Relevant External Links for ARNTL2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ARNTL2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ARNTL2-AS1 Gene

Disorders for ARNTL2-AS1 Gene

Relevant External Links for ARNTL2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ARNTL2-AS1

No disorders were found for ARNTL2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ARNTL2-AS1 Gene

Publications for ARNTL2-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for ARNTL2-AS1 Gene

Sources for ARNTL2-AS1 Gene

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