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Aliases for ARMCX6 Gene

Aliases for ARMCX6 Gene

  • Armadillo Repeat Containing, X-Linked 6 2 3
  • Protein ARMCX6 3
  • GASP10 3

External Ids for ARMCX6 Gene

Previous GeneCards Identifiers for ARMCX6 Gene

  • GC0XM100676
  • GC0XM100756
  • GC0XM100870
  • GC0XM090660

Summaries for ARMCX6 Gene

GeneCards Summary for ARMCX6 Gene

ARMCX6 (Armadillo Repeat Containing, X-Linked 6) is a Protein Coding gene. An important paralog of this gene is BHLHB9.

Gene Wiki entry for ARMCX6 Gene

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ARMCX6 Gene

Genomics for ARMCX6 Gene

Regulatory Elements for ARMCX6 Gene

Genomic Location for ARMCX6 Gene

Start:
101,615,118 bp from pter
End:
101,618,001 bp from pter
Size:
2,884 bases
Orientation:
Minus strand

Genomic View for ARMCX6 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ARMCX6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ARMCX6 Gene

Proteins for ARMCX6 Gene

  • Protein details for ARMCX6 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q7L4S7-ARMX6_HUMAN
    Recommended name:
    Protein ARMCX6
    Protein Accession:
    Q7L4S7
    Secondary Accessions:
    • Q9NWJ3

    Protein attributes for ARMCX6 Gene

    Size:
    300 amino acids
    Molecular mass:
    33019 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAA91387.1; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for ARMCX6 Gene

Proteomics data for ARMCX6 Gene at MOPED

Post-translational modifications for ARMCX6 Gene

No Post-translational modifications

Other Protein References for ARMCX6 Gene

No data available for DME Specific Peptides for ARMCX6 Gene

Domains for ARMCX6 Gene

Gene Families for ARMCX6 Gene

HGNC:
  • ARMC :Armadillo repeat containing

Protein Domains for ARMCX6 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for ARMCX6 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ARMCX6: view

No data available for UniProtKB/Swiss-Prot for ARMCX6 Gene

Function for ARMCX6 Gene

Phenotypes for ARMCX6 Gene

GenomeRNAi human phenotypes for ARMCX6:
genes like me logo Genes that share phenotypes with ARMCX6: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for ARMCX6 Gene

Localization for ARMCX6 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ARMCX6 Gene

Membrane; Single-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ARMCX6 Gene COMPARTMENTS Subcellular localization image for ARMCX6 gene
Compartment Confidence
mitochondrion 2
cytosol 1
endoplasmic reticulum 1
extracellular 1
nucleus 1

Gene Ontology (GO) - Cellular Components for ARMCX6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with ARMCX6: view

Pathways for ARMCX6 Gene

SuperPathways for ARMCX6 Gene

No Data Available

Interacting Proteins for ARMCX6 Gene

Gene Ontology (GO) - Biological Process for ARMCX6 Gene

None

No data available for Pathways by source for ARMCX6 Gene

Transcripts for ARMCX6 Gene

Unigene Clusters for ARMCX6 Gene

Armadillo repeat containing, X-linked 6:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ARMCX6 Gene

ExUns: 1a · 1b ^ 2a · 2b · 2c ^ 3a · 3b ^ 4a · 4b · 4c · 4d · 4e · 4f · 4g ^ 5a · 5b · 5c · 5d · 5e
SP1: - - - - - - -
SP2: -
SP3: - -
SP4: - - - - -
SP5: - - - -
SP6: - - - - - - - - -
SP7: - - -
SP8: - - - - -
SP9: - -

Relevant External Links for ARMCX6 Gene

GeneLoc Exon Structure for
ARMCX6
ECgene alternative splicing isoforms for
ARMCX6

Expression for ARMCX6 Gene

mRNA expression in normal human tissues for ARMCX6 Gene

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for ARMCX6 Gene

SOURCE GeneReport for Unigene cluster for ARMCX6 Gene Hs.83530

genes like me logo Genes that share expressions with ARMCX6: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for ARMCX6 Gene

Orthologs for ARMCX6 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ARMCX6 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ARMCX6 35
  • 98.12 (n)
  • 95.9 (a)
ARMCX6 36
  • 95 (a)
OneToOne
cow
(Bos Taurus)
Mammalia ARMCX6 35
  • 84.68 (n)
  • 75.84 (a)
ARMCX6 36
  • 76 (a)
OneToOne
dog
(Canis familiaris)
Mammalia ARMCX6 35
  • 87.58 (n)
  • 81.21 (a)
ARMCX6 36
  • 81 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Armcx6 35
  • 78.67 (n)
  • 70 (a)
Armcx6 16
Armcx6 36
  • 70 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 27 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Armcx6 35
  • 78.44 (n)
  • 69.33 (a)
chicken
(Gallus gallus)
Aves -- 36
  • 24 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 24 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii ARMCX3 36
  • 17 (a)
OneToMany
Species with no ortholog for ARMCX6:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ARMCX6 Gene

ENSEMBL:
Gene Tree for ARMCX6 (if available)
TreeFam:
Gene Tree for ARMCX6 (if available)

Paralogs for ARMCX6 Gene

Paralogs for ARMCX6 Gene

Selected SIMAP similar genes for ARMCX6 Gene using alignment to 1 proteins:

Pseudogenes.org Pseudogenes for ARMCX6 Gene

genes like me logo Genes that share paralogs with ARMCX6: view

Variants for ARMCX6 Gene

Sequence variations from dbSNP and Humsavar for ARMCX6 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type MAF
rs2858162 -- 101,618,842(+) ATAGT(A/G)TTAGG upstream-variant-2KB
rs2858163 -- 101,619,954(+) GAACT(C/T)ACTTT upstream-variant-2KB
rs11539307 -- 101,616,325(-) ACACC(A/C)AATAA missense, reference, intron-variant
rs11539308 -- 101,616,627(-) ACAGA(A/C/G/T)TTGAG utr-variant-5-prime, intron-variant, missense, reference, synonymous-codon
rs35319186 -- 101,616,158(+) ATGGC(C/T)ATTGA reference, missense, intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ARMCX6 Gene

Variant ID Type Subtype PubMed ID
nsv7452 OTHER Inversion 18451855
nsv524711 CNV Gain 19592680
nsv522728 CNV Gain 19592680
nsv499128 OTHER Inversion 21111241
nsv207 OTHER Inversion 15895083

Relevant External Links for ARMCX6 Gene

HapMap Linkage Disequilibrium report
ARMCX6
Locus Specific Mutation Databases (LSDB)
ARMCX6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ARMCX6 Gene

Disorders for ARMCX6 Gene

No disorders were found for ARMCX6 Gene.

No data available for UniProtKB/Swiss-Prot for ARMCX6 Gene

Publications for ARMCX6 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross M.T. … Bentley D.R. (Nature 2005) 3 4
  4. Mammalian BEX, WEX and GASP genes: coding and non-coding chimaerism sustained by gene conversion events. (PMID: 16221301) Winter E.E. … Ponting C.P. (BMC Evol. Biol. 2005) 2 3
  5. The Eutherian Armcx genes regulate mitochondrial trafficking in neurons and interact with Miro and Trak2. (PMID: 22569362) LA^pez-DomAcnech G. … Soriano E. (Nat Commun 2012) 2 3

Products for ARMCX6 Gene

Sources for ARMCX6 Gene

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