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Aliases for ARMCX5 Gene

Aliases for ARMCX5 Gene

  • Armadillo Repeat Containing, X-Linked 5 2 3
  • Armadillo Repeat-Containing X-Linked Protein 5 3
  • GASP5 3

External Ids for ARMCX5 Gene

Previous GeneCards Identifiers for ARMCX5 Gene

  • GC0XP101660
  • GC0XP101854
  • GC0XP091519

Summaries for ARMCX5 Gene

GeneCards Summary for ARMCX5 Gene

ARMCX5 (Armadillo Repeat Containing, X-Linked 5) is a Protein Coding gene. An important paralog of this gene is ARMCX6.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ARMCX5 Gene

Genomics for ARMCX5 Gene

Regulatory Elements for ARMCX5 Gene

Genomic Location for ARMCX5 Gene

Start:
102,599,168 bp from pter
End:
102,604,159 bp from pter
Size:
4,992 bases
Orientation:
Plus strand

Genomic View for ARMCX5 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ARMCX5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ARMCX5 Gene

Proteins for ARMCX5 Gene

  • Protein details for ARMCX5 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6P1M9-ARMX5_HUMAN
    Recommended name:
    Armadillo repeat-containing X-linked protein 5
    Protein Accession:
    Q6P1M9
    Secondary Accessions:
    • B3KU88
    • D3DX99
    • Q68DB4
    • Q9BVZ3
    • Q9H969

    Protein attributes for ARMCX5 Gene

    Size:
    558 amino acids
    Molecular mass:
    62346 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ARMCX5 Gene

Proteomics data for ARMCX5 Gene at MOPED

Post-translational modifications for ARMCX5 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for ARMCX5 Gene

Domains for ARMCX5 Gene

Gene Families for ARMCX5 Gene

HGNC:
  • ARMC :Armadillo repeat containing

Protein Domains for ARMCX5 Gene

Suggested Antigen Peptide Sequences for ARMCX5 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q6P1M9

UniProtKB/Swiss-Prot:

ARMX5_HUMAN :
  • Q6P1M9
Similarity:
  • Contains 3 ARM repeats.
genes like me logo Genes that share domains with ARMCX5: view

Function for ARMCX5 Gene

Gene Ontology (GO) - Molecular Function for ARMCX5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005488 binding --
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with ARMCX5: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for ARMCX5 Gene

Localization for ARMCX5 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ARMCX5 Gene COMPARTMENTS Subcellular localization image for ARMCX5 gene
Compartment Confidence
cytosol 2
nucleus 2
plasma membrane 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for ARMCX5 Gene

Pathways for ARMCX5 Gene

SuperPathways for ARMCX5 Gene

No Data Available

Interacting Proteins for ARMCX5 Gene

STRING Interaction Network Preview (showing 3 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000246174%0d%0a9606.ENSP00000344818%0d%0a9606.ENSP00000373715%0d%0a9606.ENSP00000083182%0d%0a
Selected Interacting proteins: ENSP00000246174 Q6P1M9-ARMX5_HUMAN for ARMCX5 Gene via STRING UniProtKB

Gene Ontology (GO) - Biological Process for ARMCX5 Gene

None

No data available for Pathways by source for ARMCX5 Gene

Transcripts for ARMCX5 Gene

Unigene Clusters for ARMCX5 Gene

Armadillo repeat containing, X-linked 5:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ARMCX5

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ARMCX5 Gene

ExUns: 1a · 1b · 1c ^ 2a · 2b · 2c · 2d ^ 3a · 3b · 3c · 3d · 3e ^ 4 ^ 5a · 5b · 5c ^ 6a · 6b · 6c · 6d · 6e · 6f · 6g · 6h · 6i ^ 7a ·
SP1: - - - -
SP2: - - - -
SP3: - - - - - - - - - - - -
SP4: - - - - - - - - - -
SP5: - - - - -
SP6: - - - - -
SP7: - - - -
SP8: - - - - - - - - - - -
SP9: - - - - - - - - - - - -
SP10: - - -
SP11: - - -
SP12: - - - -
SP13: - - - - - - - - - - - - -
SP14: - - -
SP15: - - - - - - - - - - - -
SP16: - - - - - - - - - - - -
SP17: - - - -
SP18: -

ExUns: 7b · 7c · 7d
SP1:
SP2:
SP3:
SP4:
SP5:
SP6:
SP7:
SP8:
SP9:
SP10:
SP11:
SP12:
SP13:
SP14:
SP15:
SP16:
SP17:
SP18:

Relevant External Links for ARMCX5 Gene

GeneLoc Exon Structure for
ARMCX5
ECgene alternative splicing isoforms for
ARMCX5

Expression for ARMCX5 Gene

mRNA expression in normal human tissues for ARMCX5 Gene

Integrated Proteomics: protein expression from ProteomicsDB, MOPED, and MaxQB for ARMCX5 Gene

SOURCE GeneReport for Unigene cluster for ARMCX5 Gene Hs.522729

genes like me logo Genes that share expressions with ARMCX5: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for ARMCX5 Gene

Orthologs for ARMCX5 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ARMCX5 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 36
  • 25 (a)
ManyToMany
ARMCX5 35
  • 99.69 (n)
  • 99.25 (a)
cow
(Bos Taurus)
Mammalia ARMCX5 35
  • 84.17 (n)
  • 76.49 (a)
ARMCX5 36
  • 76 (a)
OneToOne
dog
(Canis familiaris)
Mammalia ARMCX5 35
  • 85.48 (n)
  • 79.75 (a)
ARMCX5 36
  • 78 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Armcx5 35
  • 76.24 (n)
  • 61.58 (a)
Armcx5 16
Armcx5 36
  • 56 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 33 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia LOC102552920 35
  • 76.18 (n)
  • 61.58 (a)
chicken
(Gallus gallus)
Aves -- 36
  • 28 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 26 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii ARMCX3 36
  • 21 (a)
OneToMany
Species with no ortholog for ARMCX5:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ARMCX5 Gene

ENSEMBL:
Gene Tree for ARMCX5 (if available)
TreeFam:
Gene Tree for ARMCX5 (if available)

Paralogs for ARMCX5 Gene

Paralogs for ARMCX5 Gene

Selected SIMAP similar genes for ARMCX5 Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with ARMCX5: view

Variants for ARMCX5 Gene

Sequence variations from dbSNP and Humsavar for ARMCX5 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type MAF
rs150556123 -- 102,597,343(+) TCAAG(A/G)AAATC upstream-variant-2KB
rs377744591 -- 102,597,198(+) AAATG(A/T)CTGAA upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for ARMCX5 Gene

Variant ID Type Subtype PubMed ID
nsv526716 CNV Gain 19592680

Relevant External Links for ARMCX5 Gene

HapMap Linkage Disequilibrium report
ARMCX5
Locus Specific Mutation Databases (LSDB)
ARMCX5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ARMCX5 Gene

Disorders for ARMCX5 Gene

No disorders were found for ARMCX5 Gene.

No data available for UniProtKB/Swiss-Prot for ARMCX5 Gene

Publications for ARMCX5 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  2. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross M.T. … Bentley D.R. (Nature 2005) 3 4
  3. Mammalian BEX, WEX and GASP genes: coding and non-coding chimaerism sustained by gene conversion events. (PMID: 16221301) Winter E.E. … Ponting C.P. (BMC Evol. Biol. 2005) 2 3
  4. The Eutherian Armcx genes regulate mitochondrial trafficking in neurons and interact with Miro and Trak2. (PMID: 22569362) LA^pez-DomAcnech G. … Soriano E. (Nat Commun 2012) 2 3
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4

Products for ARMCX5 Gene

Sources for ARMCX5 Gene

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