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ARMCX1 Gene

protein-coding   GIFtS: 48
GCID: GC0XP100805

Armadillo Repeat Containing, X-Linked 1

  Search for ARMCX1
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Armadillo Repeat Containing, X-Linked 11 2     Arm Protein Lost In Epithelial Cancers, X Chromosome, 12
ALEX12 3 5     Armadillo Repeat-Containing X-Linked Protein 12
ARM Protein Lost In Epithelial Cancers On Chromosome X 12 3     Protein ALEX13
GASP72     

External Ids:    HGNC: 180731   Entrez Gene: 513092   Ensembl: ENSG000001269477   OMIM: 3003625   UniProtKB: Q9P2913   

Export aliases for ARMCX1 gene to outside databases

Previous GC identifers: GC0XP099578 GC0XP100611 GC0XP100692 GC0XP090613


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for ARMCX1 Gene:
This gene encodes a member of the ALEX family of proteins and may play a role in tumor suppression. The encoded
protein contains a potential N-terminal transmembrane domain and two Armadillo (arm) repeats. Other proteins
containing the arm repeat are involved in development, maintenance of tissue integrity, and tumorigenesis. This
gene is closely localized with other family members, including ALEX2 and ALEX3, on the X chromosome. (provided by
RefSeq, Jul 2008)

GeneCards Summary for ARMCX1 Gene:
ARMCX1 (armadillo repeat containing, X-linked 1) is a protein-coding gene. An important paralog of this gene is GPRASP2.

Gene Wiki entry for ARMCX1 Gene


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence:
NC_000023.11  NC_018934.2  NT_011651.18  
Regulatory elements:
   Regulatory transcription factor binding sites in the ARMCX1 gene promoter:
         GR   C/EBPbeta   STAT1   AML1a   Nkx2-5   MZF-1   Pax-3   SRY   POU2F1a   GR-alpha   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidARMCX1 promoter sequence
   Search Chromatin IP Primers for ARMCX1

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat ARMCX1


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: Xq21.33-q22.2   Ensembl cytogenetic band:  Xq22.1   HGNC cytogenetic band: Xq21.33-q22.2

ARMCX1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ARMCX1 gene location

GeneLoc information about chromosome X         GeneLoc Exon Structure

GeneLoc location for GC0XP100805:  view genomic region     (about GC identifiers)

Start:
100,805,514 bp from pter      End:
100,809,683 bp from pter
Size:
4,170 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., and/or eBioscience,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., and/or eBioscience, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: ARMX1_HUMAN, Q9P291 (See protein sequence)
Recommended Name: Armadillo repeat-containing X-linked protein 1  
Size: 453 amino acids; 49180 Da
Sequence caution: Sequence=AAG44561.1; Type=Frameshift; Positions=357, 370;
Secondary accessions: Q53HK2 Q9H2Q0

Explore the universe of human proteins at neXtProt for ARMCX1: NX_Q9P291

Explore proteomics data for ARMCX1 at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See ARMCX1 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_057692.1  
    ENSEMBL proteins: 
     ENSP00000361917  

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    ARMC: Armadillo repeat containing

    4 InterPro protein domains:
     IPR011989 ARM-like
     IPR000225 Armadillo
     IPR006911 ARM-rpt_dom
     IPR016024 ARM-type_fold

    Graphical View of Domain Structure for InterPro Entry Q9P291

    ProtoNet protein and cluster: Q9P291

    UniProtKB/Swiss-Prot: ARMX1_HUMAN, Q9P291
    Similarity: Contains 3 ARM repeats


    Find genes that share domains with ARMCX1           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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         Gene Ontology (GO): 2 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005488binding ----
    GO:0005515protein binding ----
         
    Find genes that share ontologies with ARMCX1           About GenesLikeMe


    Animal Models:
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    Selected qRT-PCR Assays for microRNAs that regulate ARMCX1 (see all 11):
    hsa-miR-7-2* hsa-miR-21 hsa-miR-646 hsa-miR-4298 hsa-miR-223 hsa-miR-1302 hsa-miR-3122 hsa-miR-590-5p
    SwitchGear 3'UTR luciferase reporter plasmidARMCX1 3' UTR sequence
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    Predesigned siRNA for gene silencing in human, mouse, rat ARMCX1

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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    ARMX1_HUMAN, Q9P291: Membrane; Single-pass membrane protein (Potential)
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    cytosol2
    endoplasmic reticulum2
    extracellular1
    golgi apparatus1
    mitochondrion1
    peroxisome1

    Gene Ontology (GO): 1 cellular component term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0016021integral component of membrane IEA--

    Find genes that share ontologies with ARMCX1           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for ARMCX1
    Interactions:

        Search GeneGlobe Interaction Network for ARMCX1

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for ARMCX1 (ARMX1)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for ARMCX1 gene: 
    NM_016608.1  

    Unigene Cluster for ARMCX1:

    Armadillo repeat containing, X-linked 1
    Hs.9728  [show with all ESTs]
    Unigene Representative Sequence: AB039670
    1 Ensembl transcript including schematic representation, and UCSC links where relevant:
    ENST00000372829(uc004ehv.3 uc004ehw.3)
    miRNA
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    Selected qRT-PCR Assays for microRNAs that regulate ARMCX1 (see all 11):
    hsa-miR-7-2* hsa-miR-21 hsa-miR-646 hsa-miR-4298 hsa-miR-223 hsa-miR-1302 hsa-miR-3122 hsa-miR-590-5p
    SwitchGear 3'UTR luciferase reporter plasmidARMCX1 3' UTR sequence
    Inhib. RNA
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    Predesigned siRNA for gene silencing in human, mouse, rat ARMCX1
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      QuantiTect SYBR Green Assays in human, mouse, rat ARMCX1
      QuantiFast Probe-based Assays in human, mouse, rat ARMCX1

    Additional mRNA sequence: 

    AB039670.1 AF248963.1 AK074785.1 AK222578.1 BC002691.2 CR749609.1 

    8 DOTS entries:

    DT.413312  DT.121279997  DT.121280005  DT.95265219  DT.100747808  DT.121280044  DT.121280046  DT.121280048 

    Selected AceView cDNA sequences (see all 117):

    BU741213 AA971240 AI949956 BC002691 N27247 AW952052 BM721104 AA886403 
    AA348461 CA443236 BM922285 BQ894066 F10236 CR749609 BE677052 BQ772949 
    H04746 AI951939 BM679530 AB039670 AV706716 Z40853 BP380387 BU633421 

    GeneLoc Exon Structure

    Selected Alternative Splicing Database (ASD) splice patterns (SP) for ARMCX1 (see all 7)    About this scheme

    ExUns: 1a · 1b · 1c · 1d ^ 2a · 2b ^ 3 ^ 4 ^ 5 ^ 6a · 6b · 6c · 6d · 6e · 6f
    SP1:                          -           -           -                                       
    SP2:                          -           -           -                                       
    SP3:                          -           -                                                   
    SP4:                          -     -     -           -                                       
    SP5:                                      -           -                                       


    ECgene alternative splicing isoforms for ARMCX1

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    ARMCX1 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: CATAAGCTAC
    ARMCX1 Expression
    About this image


    ARMCX1 expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database
     selected tissues (see all 4) fully expand
     
     Trophoblast (Extraembryonic Tissues)
             Trophoblast Cells Trophoblast
     
     Ovary (Reproductive System)
             Oviduct
     
     Liver (Hepatobiliary System)
             Hematopoietic Stem Cells Liver Bud
     
     Blood (Cardiovascular System)
             Hematopoietic Stem Cells Liver Bud
    ARMCX1 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    ARMCX1 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.9728

    UniProtKB/Swiss-Prot: ARMX1_HUMAN, Q9P291
    Tissue specificity: Expressed at high levels ovary, heart, testis, prostate, brain, spleen and colon. Expressed at
    very low levels in liver and thymus. Not expressed in peripheral blood leukocytes. Not or reduced expressed in
    lung, prostate, colon, pancreas and ovarian carcinomas

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    In Situ
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of chordates.

    Orthologs for ARMCX1 gene from Selected species (see all 8)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Armcx11 , 5 armadillo repeat containing, X-linked 11, 5 83.75(n)1
    84.51(a)1
      X (56.24 cM)5
    782481  NM_001166378.11  NP_001159850.11 
     1347179635 
    chicken
    (Gallus gallus)
    Aves --
    Uncharacterized protein
    38(a)
    1 → many
    1(12726364-12735694)
    lizard
    (Anolis carolinensis)
    Reptilia --
    Uncharacterized protein
    35(a)
    1 → many
    5(95300984-95312074)
    zebrafish
    (Danio rerio)
    Actinopterygii ARMCX36
    armadillo repeat containing, X-linked 3
    29(a)
    1 → many
    25(19368321-19378457) ENSDARG00000062960


    ENSEMBL Gene Tree for ARMCX1 (if available)
    TreeFam Gene Tree for ARMCX1 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for ARMCX1 gene
    GPRASP22  BHLHB92  ARMCX22  ARMCX52  GPRASP12  ARMCX62  ARMC102  ARMCX32  
    5 SIMAP similar genes for ARMCX1 using alignment to 1 protein entry:     ARMX1_HUMAN:
    DKFZp686P06199    ARMC10    ARMCX2    ARMCX3    ARMCX4

    Find genes that share paralogs with ARMCX1           About GenesLikeMe



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for ARMCX1 (see all 98)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr X posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs66211041,2
    C,F,H--100771186(+) atggcG/Atttta 1 -- us2k14Minor allele frequency- A:0.00NS EA 416
    rs1924870411,2
    --100771338(+) TTTTTA/TAAAAG 1 -- us2k10--------
    rs1846617171,2
    --100772141(+) TGCAAA/GTTGAT 1 -- us2k10--------
    rs1901477681,2
    --100772487(+) TTTTCC/TCTCCC 1 -- us2k10--------
    rs1484585351,2
    --100772699(+) ATAGAC/GAGAGA 1 -- us2k10--------
    rs3702323311,2
    C--100772751(+) AAGAG-/GAAGAA 1 -- us2k10--------
    rs1927444261,2
    --100772764(+) GGCCAA/GCGGAC 1 -- us2k10--------
    rs1847319461,2
    --100772847(+) TCTCCA/GGGGTT 1 -- us2k10--------
    rs70559001,2
    C,F,H--100773105(+) CTGCCT/GGGATC 1 -- ut51 ese316Minor allele frequency- G:0.11NS EA NA WA CSA 1979
    rs1475948851,2
    --100773211(+) CCAAAC/TCCTTG 1 -- int10--------

    HapMap Linkage Disequilibrium report for ARMCX1 (100805514 - 100809683 bp)

    Structural Variations
          Database of Genomic Variants (DGV) variations for ARMCX1: --
    Locus Specific Mutation Databases (LSDB): ARMCX1

    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing ARMCX1
    DNA2.0 Custom Variant and Variant Library Synthesis for ARMCX1

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    OMIM gene information: 300362    OMIM disorders: --


    Find genes that share disorders with ARMCX1           About GenesLikeMe


    Export disorders for ARMCX1 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for ARMCX1 gene, integrated from 10 sources (see all 12):
    (articles sorted by number of sources associating them with ARMCX1)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. ALEX1, a novel human armadillo repeat protein that is expressed differentially in normal tissues and carcinomas. (PubMed id 11162520)1, 2, 3, 9 Kurochkin I.V.... Nomura H. (Biochem. Biophys. Res. Commun. 2001)
    2. The Eutherian Armcx genes regulate mitochondrial trafficking in neurons and interact with Miro and Trak2. (PubMed id 22569362)1, 3 LA^pez-DomAcnech G....Soriano E. (Nat Commun 2012)
    3. The DNA sequence of the human X chromosome. (PubMed id 15772651)1, 2 Ross M.T.... Bentley D.R. (Nature 2005)
    4. Mammalian BEX, WEX and GASP genes: coding and non-coding chimaerism sustained by gene conversion events. (PubMed id 16221301)1, 3 Winter E.E. and Ponting C.P. (BMC Evol. Biol. 2005)
    5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    6. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (Nat. Genet. 2004)
    7. ALEX1 suppresses colony formation ability of human colorectal carcinoma cell lines. (PubMed id 22494058)1 Iseki H....Koyama I. (Cancer Sci. 2012)
    8. Systems-wide analysis of ubiquitylation dynamics reveals a key role for PAF15 ubiquitylation in DNA-damage bypass. (PubMed id 23000965)1 Povlsen L.K....Choudhary C. (Nat. Cell Biol. 2012)
    9. Human Arm protein lost in epithelial cancers, on chromosome X 1 (ALEX1) gene is transcriptionally regulated by CREB and Wnt/beta-catenin signaling. (PubMed id 20398052)1 Iseki H....Koyama I. (Cancer Sci. 2010)
    10. Signal sequence and keyword trap in silico for selection of full- length human cDNAs encoding secretion or membrane proteins from oligo- capped cDNA libraries. (PubMed id 16303743)1 Otsuki T....Isogai T. (DNA Res. 2005)

    (in PubMed, OMIM, and NCBI Bookshelf)
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      Query String
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    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 51309 HGNC: 18073 AceView: ARMCX1 Ensembl:ENSG00000126947 euGenes: HUgn51309
    ECgene: ARMCX1 H-InvDB: ARMCX1

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for ARMCX1 Pharmacogenomics, SNPs, Pathways
    ATLAS Chromosomes in Cancer entry for ARMCX1 Genetics and Cytogenetics in Oncology and Haematology

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for ARMCX1 gene:
    Search GeneIP for patents involving ARMCX1

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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