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Aliases for ARMC9 Gene

Aliases for ARMC9 Gene

  • Armadillo Repeat Containing 9 2 3
  • Melanoma/Melanocyte-Specific Tumor Antigen KU-MEL-1 3 4
  • NS21 3 4
  • Melanoma/Melanocyte Specific Protein KU-MEL-1 3
  • LisH Domain-Containing Protein ARMC9 3
  • Armadillo/Beta-Catenin-Like Repeats 3
  • KU-MEL-1 3
  • KIAA1868 4
  • ARM 3

External Ids for ARMC9 Gene

Previous GeneCards Identifiers for ARMC9 Gene

  • GC02P231889
  • GC02P231771
  • GC02P232064
  • GC02P223905

Summaries for ARMC9 Gene

GeneCards Summary for ARMC9 Gene

ARMC9 (Armadillo Repeat Containing 9) is a Protein Coding gene. Diseases associated with ARMC9 include mucopolysaccharidosis iii and melanoma.

Gene Wiki entry for ARMC9 Gene

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ARMC9 Gene

Genomics for ARMC9 Gene

Regulatory Elements for ARMC9 Gene

Genomic Location for ARMC9 Gene

Start:
231,198,546 bp from pter
End:
231,374,837 bp from pter
Size:
176,292 bases
Orientation:
Plus strand

Genomic View for ARMC9 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ARMC9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ARMC9 Gene

Proteins for ARMC9 Gene

  • Protein details for ARMC9 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q7Z3E5-ARMC9_HUMAN
    Recommended name:
    LisH domain-containing protein ARMC9
    Protein Accession:
    Q7Z3E5
    Secondary Accessions:
    • Q53TI3
    • Q6P162
    • Q7L594
    • Q86WG2
    • Q96JF9
    • Q9H9R8

    Protein attributes for ARMC9 Gene

    Size:
    817 amino acids
    Molecular mass:
    91762 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAB14153.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for ARMC9 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ARMC9 Gene

Proteomics data for ARMC9 Gene at MOPED

Post-translational modifications for ARMC9 Gene

  • Ubiquitination at Lys441
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for ARMC9 Gene

Domains for ARMC9 Gene

Gene Families for ARMC9 Gene

HGNC:
  • ARMC :Armadillo repeat containing

Protein Domains for ARMC9 Gene

Suggested Antigen Peptide Sequences for ARMC9 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q7Z3E5

UniProtKB/Swiss-Prot:

ARMC9_HUMAN :
  • Q7Z3E5
Domain:
  • Contains 1 LisH domain.
genes like me logo Genes that share domains with ARMC9: view

Function for ARMC9 Gene

Gene Ontology (GO) - Molecular Function for ARMC9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005488 binding --
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with ARMC9: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for ARMC9 Gene

Localization for ARMC9 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ARMC9 Gene COMPARTMENTS Subcellular localization image for ARMC9 gene
Compartment Confidence
cytoskeleton 3
cytosol 2
endoplasmic reticulum 2
nucleus 2

Gene Ontology (GO) - Cellular Components for ARMC9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0070062 extracellular exosome IDA 19056867
genes like me logo Genes that share ontologies with ARMC9: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for ARMC9 Gene

Pathways for ARMC9 Gene

SuperPathways for ARMC9 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ARMC9 Gene

None

No data available for Pathways by source for ARMC9 Gene

Transcripts for ARMC9 Gene

Unigene Clusters for ARMC9 Gene

Armadillo repeat containing 9:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ARMC9 Gene

No ASD Table

Relevant External Links for ARMC9 Gene

GeneLoc Exon Structure for
ARMC9
ECgene alternative splicing isoforms for
ARMC9

Expression for ARMC9 Gene

mRNA expression in normal human tissues for ARMC9 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for ARMC9 Gene

This gene is overexpressed in Esophagus - Muscularis (4.8).

Integrated Proteomics: protein expression from ProteomicsDB, MOPED, and MaxQB for ARMC9 Gene

SOURCE GeneReport for Unigene cluster for ARMC9 Gene Hs.471610

mRNA Expression by UniProt/SwissProt for ARMC9 Gene

Q7Z3E5-ARMC9_HUMAN
Tissue specificity: Strongly expressed in most melanomas and melanocytes. Weakly expressed in the testis.
genes like me logo Genes that share expressions with ARMC9: view

Orthologs for ARMC9 Gene

This gene was present in the common ancestor of animals.

Orthologs for ARMC9 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ARMC9 35
  • 99.19 (n)
  • 98.9 (a)
ARMC9 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia ARMC9 35
  • 89.51 (n)
  • 90.96 (a)
ARMC9 36
  • 90 (a)
OneToOne
dog
(Canis familiaris)
Mammalia ARMC9 35
  • 87.04 (n)
  • 85.19 (a)
ARMC9 36
  • 75 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Armc9 35
  • 84.4 (n)
  • 85.91 (a)
Armc9 16
Armc9 36
  • 75 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia ARMC9 36
  • 70 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 69 (a)
OneToMany
-- 36
  • 82 (a)
OneToMany
-- 36
  • 78 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Armc9 35
  • 83.97 (n)
  • 85.25 (a)
chicken
(Gallus gallus)
Aves ARMC9 35
  • 71.81 (n)
  • 72.64 (a)
ARMC9 36
  • 65 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia ARMC9 36
  • 64 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia armc9 35
  • 63.02 (n)
  • 59.58 (a)
zebrafish
(Danio rerio)
Actinopterygii armc9 36
  • 50 (a)
OneToOne
LOC100334308 35
  • 62.3 (n)
  • 59.52 (a)
worm
(Caenorhabditis elegans)
Secernentea F59G1.4 36
  • 17 (a)
OneToOne
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.13954 35
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 53 (a)
OneToOne
Species with no ortholog for ARMC9:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for ARMC9 Gene

ENSEMBL:
Gene Tree for ARMC9 (if available)
TreeFam:
Gene Tree for ARMC9 (if available)

Paralogs for ARMC9 Gene

No data available for Paralogs for ARMC9 Gene

Variants for ARMC9 Gene

Sequence variations from dbSNP and Humsavar for ARMC9 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type MAF
rs732079 -- 231,209,766(+) CCTGA(C/G)CTTTG intron-variant
rs745962 -- 231,294,499(+) GGAGA(C/T)AGTCA intron-variant
rs753855 -- 231,201,938(-) gggag(A/G)gtggg intron-variant
rs768869 -- 231,239,016(+) CTTCT(A/G)CTGCC intron-variant
rs1006663 -- 231,217,988(-) aaaca(A/G)ggcgc intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ARMC9 Gene

Variant ID Type Subtype PubMed ID
esv2721611 CNV Deletion 23290073
esv2721612 CNV Deletion 23290073
esv2277694 CNV Deletion 18987734
nsv834566 CNV Loss 17160897
nsv518307 CNV Loss 19592680

Relevant External Links for ARMC9 Gene

HapMap Linkage Disequilibrium report
ARMC9

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ARMC9 Gene

Disorders for ARMC9 Gene

MalaCards: The human disease database

MalaCards: The human disease database. (2) Diseases for ARMC9 Gene including...

Search for ARMC9 Gene in MalaCards »

(1) University of Copenhagen DISEASES for ARMC9 Gene

Relevant External Links for ARMC9

Genetic Association Database (GAD)
ARMC9
Human Genome Epidemiology (HuGE) Navigator
ARMC9
genes like me logo Genes that share disorders with ARMC9: view

No data available for UniProtKB/Swiss-Prot for ARMC9 Gene

Publications for ARMC9 Gene

  1. Prediction of the coding sequences of unidentified human genes. XX. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PMID: 11347906) Nagase T. … Ohara O. (DNA Res. 2001) 2 3 4
  2. Tumor antigens isolated from a patient with vitiligo and T-cell- infiltrated melanoma. (PMID: 11691810) Kiniwa Y. … Kawakami Y. (Cancer Res. 2001) 3 4
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  5. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 48

Products for ARMC9 Gene

Sources for ARMC9 Gene

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