ARMC8 Gene
protein-coding GIFtS : 46
GCID: GC03 P137906
armadillo repeat containing 8
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Aliasesfor ARMC8 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Armadillo Repeat Containing 8 1 2 DKFZP434A0431 GID51 2 Armadillo Repeat-Containing Protein 82 HSPC0561 2 GID Complex Subunit 5, VID28 Homolog2 VID281 2
Export aliases for ARMC8 gene to outside databases Previous GC identifers: GC03P139389 GC03P135282
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Summariesfor ARMC8 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section --
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Genomic Viewsfor ARMC8 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000003.11 NC_018914.1 NT_005612.16 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the ARMC8 gene promoter: RFX1 C/EBPbeta POU3F1 Cdc5 AREB6 FAC1 STAT3 c-Myb Other transcription factors Search SABiosciences Chromatin IP Primers for ARMC8 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat ARMC8
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 3q22.3 Ensembl cytogenetic band: 3q22.3 HGNC cytogenetic band: 3q22 ARMC8 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 3 GeneLoc Exon Structure
GeneLoc location for GC03P137906: view genomic region
(about GC identifiers )
Start:
137,906,109 bp from pter
End:
138,017,231 bp from pter
Size:
111,123 bases
Orientation:
plus strand
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Proteinsfor ARMC8 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: ARMC8_HUMAN, Q8IUR7 (See
protein sequence )Recommended Name: Armadillo repeat-containing protein 8 Size : 673 amino acids; 75509 Da
Sequence caution : Sequence=BAA91861.1; Type=Frameshift; Positions=468; Sequence=BAA91959.1; Type=Miscellaneousdiscrepancy; Note=Intron retention; Sequence=CAB46423.1; Type=Miscellaneous discrepancy; Note=Intron retention;
Secondary accessions : A8K0L2 B7Z441 B7Z453 D3DNE6 F5GWK4 Q6PIL2 Q96D19 Q96HZ5 Q9NV02 Q9NV94 Q9Y4R9Alternative splicing : 6 isoforms : Q8IUR7-1 Q8IUR7-2 Q8IUR7-3 Q8IUR7-6 Q8IUR7-7 Q8IUR7-8 (No experimental confirmation available)Explore the universe of human proteins at neXtProt for ARMC8: NX_Q8IUR7 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q8IUR7 ARMC8 Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins (5 alternative transcripts):
NP_001253970.1 NP_001253971.1 NP_054873.2 NP_056211.2 NP_998819.1 ENSEMBL proteins: ENSP00000420333 ENSP00000419413 ENSP00000417304 ENSP00000418074 ENSP00000417699 ENSP00000351221 ENSP00000418412 ENSP00000420706 ENSP00000417049 ENSP00000420440 ENSP00000418405 ENSP00000420719 ENSP00000417403 ENSP00000418457 ENSP00000419888 ENSP00000419473 ENSP00000417457 ENSP00000441592 ENSP00000376778 Human Recombinant Protein Products: ARMC8 Antibody Products: Assay Products for ARMC8:
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Protein
Domains / Familiesfor ARMC8 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
ARMC8 for domains About GeneDecksing 3 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q8IUR7 ProtoNet protein and cluster: Q8IUR7
UniProtKB/Swiss-Prot: ARMC8_HUMAN, Q8IUR7 Similarity : Contains 14 ARM repeats
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Functionfor ARMC8 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for ARMC8 (see all 5 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for ARMC8 (see all 5 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 3 ): ARMC8 (NM_014154 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for ARMC8 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat ARMC8
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ARMC8
Animal Models: 1 MGI mutant phenotype (inferred from 1 allele ) (MGI details for Armc8) :
ARMC8 for phenotypes About GeneDecksing
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Pathways & Interactionsfor ARMC8 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for ARMC8 STRING Interaction
Network Preview (showing 5 interactants - click image to see 7)5/9 Interacting proteins for ARMC8 (Q8IUR7 2 , 3 ENSP00000351221 4 ) via UniProtKB, MINT, STRING , and/or I2D (see all 9 )About this table
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Drugs & Compoundsfor ARMC8 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for ARMC8 Search CenterWatch for drugs/clinical trials and news about ARMC8
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Transcriptsfor ARMC8 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for ARMC8 gene (5 alternative transcripts): NM_001267041.1 NM_001267042.1 NM_014154.3 NM_015396.4 NM_213654.2 Unigene Cluster for ARMC8:
Armadillo repeat containing 8 Hs.266826 [show with all ESTs ] Unigene Representative Sequence: NM_015396 18/24 Ensembl transcripts including schematic representations, and UCSC links where relevant (see all 24 ): ENST00000481646 ENST00000469044 (uc003esa.1 uc011bmf.1 uc011bmg.1 uc011bmh.1 uc003esb.1 uc003esc.1 )ENST00000491704 ENST00000461600 ENST00000466749 ENST00000358441 (uc003erw.3 uc003erx.3 uc003ery.3 )ENST00000489213 ENST00000461822 ENST00000485396 ENST00000471453 ENST00000470821 ENST00000471709 ENST00000463485 ENST00000468560 ENST00000470842 ENST00000470549 ENST00000469860 ENST00000460495 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for ARMC8 (see all 5 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for ARMC8 (see all 5 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 3 ): ARMC8 (NM_014154 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for ARMC8 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat ARMC8
Additional cDNA sequence: AF109184.1 AF161541.1 AK001721.1 AK098500.1 AK289577.1 AK296757.1 AK296837.1 AK299229.1 AK299769.1 AK304558.1 AK315932.1 BC013424.1 BC032661.1 BC041699.1 NR_049770.1
24/25 DOTS entries (see all 25 ): DT.100779805 DT.448578
DT.100779806 DT.443539 DT.91761400 DT.120863671 DT.100779810 DT.91761423 DT.120863641 DT.95132015 DT.100026342 DT.100779807 DT.95132013 DT.95132026 DT.95132024 DT.120863726 DT.91761413 DT.120863678 DT.97781751 DT.100647754 DT.120863657 DT.65284948 DT.75148987 DT.95117274 24/282 AceView cDNA sequences (see all 282 ):
AI669436 BP378716 AI368977 AA454110 CB157887 BG699271 CR618018 BM750277 AA702776 AW058465 AW058475 BQ960616 CD368681 AI057419 AL096748 NM_014154 AA363446 AI081073 BX364149 BQ082139 AI434370 BU857359 AI381500 AA626078 GeneLoc Exon Structure 5/9 Alternative Splicing Database (ASD) splice patterns (SP) for ARMC8 (see all 9 ) About this scheme ExUns: 1a · 1b · 1c · 1d · 1e ^ 2a · 2b ^ 3 ^ 4 ^ 5a · 5b ^ 6 ^ 7 ^ 8a · 8b · 8c ^ 9a · 9b ^ 10 ^ 11 ^ 12 ^ 13a · 13b · 13c · 13d ^ 14 ^ SP1 :           -   -   -     -   -   -           -             -   -   -     SP2 :                                 -                     SP3 :           -   -   -                   -                     SP4 :           -                                           SP5 :           -   -                                        
ExUns: 15 ^ 16 SP1 :     SP2 :     SP3 :     SP4 :     SP5 :    
ECgene alternative splicing isoforms for ARMC8
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Expression for ARMC8 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section ARMC8 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: GGCCAGAATG
About this image ARMC8 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table See ARMC8 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for ARMC8 SOURCE GeneReport for Unigene cluster: Hs.266826 SABiosciences Custom PCR Arrays for ARMC8 Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for ARMC8Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat ARMC8 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat ARMC8 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat ARMC8 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ARMC8
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Orthologsfor ARMC8 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of eukaryotes.
Orthologs for ARMC8 gene from 8/23 species (see all 23 ) About this table
ENSEMBL Gene Tree for ARMC8 (if available)TreeFam Gene Tree for ARMC8 (if available)
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Paralogsfor ARMC8 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for ARMC8 gene
ARMC8 for paralogs About GeneDecksing 1 Pseudogenes.org Pseudogene for ARMC8 PGOHUM00000236034
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Genomic Variantsfor ARMC8 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 3 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for ARMC8 (137906109 - 138017231 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 1 variation for ARMC8 1 CNV : 3449
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing ARMC8
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Disorders
/ Diseasesfor ARMC8 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
ARMC8 for disorders About GeneDecksing 1 disease for ARMC8 : About MalaCards lissencephaly 1 disease from the University of Copenhagen DISEASES database for ARMC8 :Lissencephaly Export disorders for ARMC8 gene to outside databases
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Publicationsfor ARMC8 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for ARMC8 gene, integrated from 9 sources (see all 17 ): (articles sorted by number of sources associating them with ARMC8) Utopia : connect your pdf to the dynamic world of online information
Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 1 , 2 Ota T.... Sugano S. (2004) Cloning and functional analysis of cDNAs with open reading frames for 300 previously undefined genes expressed in CD34+ hematopoietic stem/progenitor cells. (PubMed id 11042152) 1 , 3 Zhang Q.-H.... Chen Z. (2000) NOTCH1 nuclear interactome reveals key regulators of i ts transcriptional activity and oncogenic function. (PubMed id 23022380) 1 Yatim A....Benkirane M. (2012) Initial characterization of the human central proteome. (PubMed id 21269460) 2 Burkard T.R.... Colinge J. (2011) A directed protein interaction network for investigat ing intracellular signal transduction. (PubMed id 21900206) 1 Vinayagam A....Wanker E.E. (2011) Mass spectrometric analysis of lysine ubiquitylation r eveals promiscuity at site level. (PubMed id 21139048) 1 Danielsen J.M....Nielsen M.L. (2011) Armadillo Repeat Containing 8alpha Binds to HRS and P romotes HRS Interaction with Ubiquitinated Proteins. (PubMed id 20224683) 1 Tomaru K....Ishigatsubo Y. (2010) Dynamics of cullin-RING ubiquitin ligase network revea led by systematic quantitative proteomics. (PubMed id 21145461) 1 Bennett E.J....Harper J.W. (2010) Defining the human deubiquitinating enzyme interactio n landscape. (PubMed id 19615732) 1 Sowa M.E....Harper J.W. (2009) Proteasome-dependent degradation of alpha-catenin is regulated by interaction with ARMc8alpha. (PubMed id 18215130) 1 Suzuki T....Ishigatsubo Y. (2008)
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External Searches for ARMC8 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing ARMC8 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing ARMC8 gene
(According to HUGE )
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Specialized Databases showing ARMC8 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for ARMC8 gene: Search GeneIP for patents involving ARMC8 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor ARMC8 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
Browse OriGene Antibodies OriGene shRNA RFP for ARMC8 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for ARMC8 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for ARMC8 OriGene Protein Over-expression Lysate for ARMC8 Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for ARMC8 OriGene 3'-UTR Clone for ARMC8 OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for ARMC8 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for ARMC8 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs OriGene Purified Protein for ARMC8 OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for ARMC8 OriGene Custom Protein Services for ARMC8 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat ARMC8 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing ARMC8 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat ARMC8 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat ARMC8 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat ARMC8 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat ARMC8
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ARMC8 Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ARMC8
Search ThermoFisher Antibodies for ARMC8
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat ARMC8
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Aliases for ARMC8
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Expression for ARMC8
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