Free for academic non-profit institutions. Other users need a Commercial license

Aliases for ARMC4P1 Gene

Aliases for ARMC4P1 Gene

  • Armadillo Repeat Containing 4 Pseudogene 1 2 3 5

External Ids for ARMC4P1 Gene

Previous GeneCards Identifiers for ARMC4P1 Gene

  • GC10P027547

Summaries for ARMC4P1 Gene

GeneCards Summary for ARMC4P1 Gene

ARMC4P1 (Armadillo Repeat Containing 4 Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ARMC4P1 Gene

Genomics for ARMC4P1 Gene

Regulatory Elements for ARMC4P1 Gene

Enhancers for ARMC4P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10F027291 0.2 Ensembl 13.4 +32.7 32740 1.0 IRF1 ARMC4P1 RNU7-12P RNU6-452P ACBD5 YME1L1 MASTL LOC101929180 LOC102724245 LRRC37A6P
GH10F027285 0.6 ENCODE 13.2 +26.5 26525 0.2 CTCF GATA3 ZNF654 SMC3 ZNF24 RAD21 ARMC4P1 ACBD5 LOC102724245 LRRC37A6P
GH10F027298 0.2 Ensembl 12.9 +39.6 39639 0.8 GATA3 MAFG KLF9 NFE2 FOS LOC101929180 ARMC4P1 LOC102724245 LRRC37A6P
GH10F027463 1.1 Ensembl ENCODE 5 +206.2 206151 2.8 ZNF121 ZNF530 PRDM1 SPI1 PTCHD3 ARMC4P1 RAB18
GH10F027256 0.5 ENCODE 0.8 -1.4 -1368 0.8 NFYB MASTL LRRC37A6P ARMC4P1 GC10P027253
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around ARMC4P1 on UCSC Golden Path with GeneCards custom track

Promoters for ARMC4P1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001758714 438 800 ZNF202 ZNF146 RNF2 HLF CBX2 CTBP2 EZH2

Genomic Location for ARMC4P1 Gene

Chromosome:
10
Start:
27,258,762 bp from pter
End:
27,329,145 bp from pter
Size:
70,384 bases
Orientation:
Plus strand

Genomic View for ARMC4P1 Gene

Genes around ARMC4P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ARMC4P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ARMC4P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ARMC4P1 Gene

Proteins for ARMC4P1 Gene

Post-translational modifications for ARMC4P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ARMC4P1 Gene

Domains & Families for ARMC4P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ARMC4P1 Gene

Function for ARMC4P1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ARMC4P1 Gene

Localization for ARMC4P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ARMC4P1 Gene

Pathways & Interactions for ARMC4P1 Gene

SuperPathways for ARMC4P1 Gene

No Data Available

Interacting Proteins for ARMC4P1 Gene

Gene Ontology (GO) - Biological Process for ARMC4P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ARMC4P1 Gene

Transcripts for ARMC4P1 Gene

mRNA/cDNA for ARMC4P1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ARMC4P1 Gene

No ASD Table

Relevant External Links for ARMC4P1 Gene

GeneLoc Exon Structure for
ARMC4P1
ECgene alternative splicing isoforms for
ARMC4P1

Expression for ARMC4P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ARMC4P1 Gene

mRNA differential expression in normal tissues according to GTEx for ARMC4P1 Gene

This gene is overexpressed in Testis (x12.2).

NURSA nuclear receptor signaling pathways regulating expression of ARMC4P1 Gene:

ARMC4P1
genes like me logo Genes that share expression patterns with ARMC4P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for ARMC4P1 Gene

Orthologs for ARMC4P1 Gene

This gene was present in the common ancestor of mammals.

Orthologs for ARMC4P1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ARMC4 34
  • 98.74 (n)
dog
(Canis familiaris)
Mammalia LOC102151256 34
  • 80.09 (n)
Species where no ortholog for ARMC4P1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ARMC4P1 Gene

ENSEMBL:
Gene Tree for ARMC4P1 (if available)
TreeFam:
Gene Tree for ARMC4P1 (if available)

Paralogs for ARMC4P1 Gene

No data available for Paralogs for ARMC4P1 Gene

Variants for ARMC4P1 Gene

Sequence variations from dbSNP and Humsavar for ARMC4P1 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs10631133 -- 27,294,881(+) CACAT(-/AC/AT)ACACA intron-variant
rs10639856 -- 27,265,200(+) CTCCA(-/TCTC)TCTCT intron-variant
rs10639857 -- 27,265,264(+) GTGTG(-/TA)TATAT intron-variant
rs10764692 -- 27,287,322(+) CAAAA(A/C)TGGTG intron-variant, upstream-variant-2KB
rs10764693 -- 27,302,906(+) GCCTG(G/T)CAGAG intron-variant

Relevant External Links for ARMC4P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ARMC4P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ARMC4P1 Gene

Disorders for ARMC4P1 Gene

Relevant External Links for ARMC4P1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ARMC4P1

No disorders were found for ARMC4P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ARMC4P1 Gene

Publications for ARMC4P1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for ARMC4P1 Gene

Sources for ARMC4P1 Gene

Content
Loading form....