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ARMC3 Gene

protein-coding   GIFtS: 49
GCID: GC10P023256

Armadillo Repeat Containing 3

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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Armadillo Repeat Containing 31 2
Cancer/Testis Antigen 811 2 3
Beta-Catenin-Like Protein2 3
CT812 3
KU-CT-12 3
Armadillo Repeat-Containing Protein 32

External Ids:    HGNC: 309641   Entrez Gene: 2196812   Ensembl: ENSG000001653097   OMIM: 6112265   UniProtKB: Q5W0413   

Export aliases for ARMC3 gene to outside databases

Previous GC identifers: GC00U913740 GC10P023221 GC10P022877


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for ARMC3 Gene:
Armadillo/beta-catenin (CTNNB1; MIM 116806)-like (ARM) domains are imperfect 45-amino acid repeats involved in
protein-protein interactions. ARM domain-containing proteins, such as ARMC3, function in signal transduction,
development, cell adhesion and mobility, and tumor initiation and metastasis (Li et al., 2006 (PubMed
16915934)).(supplied by OMIM, Mar 2008)

GeneCards Summary for ARMC3 Gene:
ARMC3 (armadillo repeat containing 3) is a protein-coding gene. An important paralog of this gene is ARMC4.




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000010.10  NT_008705.17  NC_018921.2  
Regulatory elements:
   Regulatory transcription factor binding sites in the ARMC3 gene promoter:
         AML1a   HNF-1A   C/EBPalpha   GATA-1   MEF-2A   Ik-2   FOXJ2 (long isoform)   HNF-1   aMEF-2   FOXJ2   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidARMC3 promoter sequence
   Search Chromatin IP Primers for ARMC3

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat ARMC3


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 10p12.31   Ensembl cytogenetic band:  10p12.2   HGNC cytogenetic band: 10p12.31

ARMC3 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ARMC3 gene location

GeneLoc information about chromosome 10         GeneLoc Exon Structure

GeneLoc location for GC10P023256:  view genomic region     (about GC identifiers)

Start:
23,216,953 bp from pter      End:
23,326,518 bp from pter
Size:
109,566 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: ARMC3_HUMAN, Q5W041 (See protein sequence)
Recommended Name: Armadillo repeat-containing protein 3  
Size: 872 amino acids; 96405 Da
Sequence caution: Sequence=BAC05389.1; Type=Erroneous initiation;
Secondary accessions: A0PG76 A6NH64 B4DZL3 B7ZBN6 B7ZBN7 Q8IXS5 Q8N7B0 Q96M49
Alternative splicing: 4 isoforms:  Q5W041-2   Q5W041-3   Q5W041-4   Q5W041-5   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for ARMC3: NX_Q5W041

Explore proteomics data for ARMC3 at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See ARMC3 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins (4 alternative transcripts): 
    NP_001269674.1  NP_001269675.1  NP_001269676.1  NP_775104.2  

    ENSEMBL proteins: 
     ENSP00000298032   ENSP00000386943   ENSP00000387288   ENSP00000396629   ENSP00000365711  

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    antibodies-online peptides for ARMC3

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    ARMC: Armadillo repeat containing

    3 InterPro protein domains:
     IPR011989 ARM-like
     IPR000225 Armadillo
     IPR016024 ARM-type_fold

    Graphical View of Domain Structure for InterPro Entry Q5W041

    ProtoNet protein and cluster: Q5W041

    1 Blocks protein domain: IPB000225 Armadillo repeat

    UniProtKB/Swiss-Prot: ARMC3_HUMAN, Q5W041
    Similarity: Contains 12 ARM repeats


    Find genes that share domains with ARMC3           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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         Gene Ontology (GO): 2 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005488binding ----
    GO:0005515protein binding ----
         
    Find genes that share ontologies with ARMC3           About GenesLikeMe


    Animal Models:
       genOway: Develop your customized and physiologically relevant rodent model for ARMC3

    miRNA
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    Predesigned siRNA for gene silencing in human, mouse, rat ARMC3

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    Browse Sino Biological Human cDNA Clones
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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    cytosol3
    nucleus1

    Gene Ontology (GO): 1 cellular component term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0070062extracellular vesicular exosome IDA19056867

    Find genes that share ontologies with ARMC3           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for ARMC3
    Interactions:

        Search GeneGlobe Interaction Network for ARMC3

    STRING Interaction Network Preview (showing 2 interactants - click image to see more details)

    2 Interacting proteins for ARMC3 (ENSP000002980324) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    NCDNENSP000003483944STRING: ENSP00000348394
    FAM107BENSP000001817964STRING: ENSP00000181796
    About this table

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for ARMC3



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for ARMC3 gene (4 alternative transcripts): 
    NM_001282745.1  NM_001282746.1  NM_001282747.1  NM_173081.4  

    Unigene Cluster for ARMC3:

    Armadillo repeat containing 3
    Hs.659807  [show with all ESTs]
    Unigene Representative Sequence: NM_173081
    13 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000298032(uc001irm.4 uc010qcv.2 uc010qcw.2) ENST00000409983
    ENST00000409049 ENST00000496741 ENST00000484642 ENST00000447081 ENST00000468003
    ENST00000483596 ENST00000465729 ENST00000464017(uc001irn.1) ENST00000491803
    ENST00000473919 ENST00000376528
    miRNA
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    GenScript: all cDNA clones in your preferred vector: ARMC3 (NM_173081)
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    Pre-validated RT2 qPCR Primer Assay in human, mouse, rat ARMC3
      QuantiTect SYBR Green Assays in human, mouse, rat ARMC3
      QuantiFast Probe-based Assays in human, mouse, rat ARMC3

    Additional mRNA sequence: 

    AK057389.1 AK090961.1 AK098711.1 AK302104.1 AK302985.1 AY436643.1 BC039312.1 DQ525422.1 

    8 DOTS entries:

    DT.40205056  DT.40122502  DT.99930775  DT.100745260  DT.100661077  DT.65287466  DT.95106967  DT.40304950 

    Selected AceView cDNA sequences (see all 44):

    AK098711 AK057389 AI920819 AW470041 AI936559 BC039312 NM_173081 AW169364 
    BE043122 BQ027437 BU568065 AI628706 BG539428 AK090961 AI683856 BM976493 
    AA383466 BM974886 CA313751 BG717245 BI767641 BU853516 AI313263 BG718829 

    GeneLoc Exon Structure

    Selected Alternative Splicing Database (ASD) splice patterns (SP) for ARMC3 (see all 9)    About this scheme

    ExUns: 1 ^ 2 ^ 3a · 3b ^ 4 ^ 5 ^ 6 ^ 7 ^ 8a · 8b ^ 9 ^ 10a · 10b ^ 11a · 11b · 11c ^ 12a · 12b ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18 ^ 19 ^ 20 ^
    SP1:                    -     -                       -     -     -                                                                                             
    SP2:                    -     -                       -     -     -                                                                                             
    SP3:              -     -     -     -                       -           -                             -     -                                                   
    SP4:                    -     -                       -     -     -     -     -                                                                                 
    SP5:                    -     -                       -     -     -     -     -     -     -     -                                                               

    ExUns: 21 ^ 22
    SP1:            
    SP2:            
    SP3:            
    SP4:            
    SP5:            


    ECgene alternative splicing isoforms for ARMC3

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    ARMC3 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: --
    ARMC3 Expression
    About this image


    ARMC3 expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database
     selected tissues (see all 5) fully expand
     
     Testis (Reproductive System)
             Leydig Cells Testis Interstitium
     
     Trophoblast (Extraembryonic Tissues)
             Trophoblast Cells Trophoblast
     
     Ovary (Reproductive System)
             Oviduct
     
     Neural Tube (Nervous System)
             Mesencephalic Floor Plate
     
     Brain (Nervous System)
             Cerebellum
    ARMC3 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    ARMC3 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.659807

    UniProtKB/Swiss-Prot: ARMC3_HUMAN, Q5W041
    Tissue specificity: Isoform 2 is expressed in skeletal muscle, brain, lung, kidney, prostate and testis. Isoform 3
    is mainly expressed in skeletal muscle, liver, spleen and thymus. Expressed in many cancer tissues and cell lines

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    In Situ
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ARMC3

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of animals.

    Orthologs for ARMC3 gene from Selected species (see all 15)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Armc31 , 5 armadillo repeat containing 31, 5 79.64(n)1
    82.62(a)1
      2 (13.20 cM)5
    708821  NM_001081083.21  NP_001074552.11 
     191993025 
    chicken
    (Gallus gallus)
    Aves ARMC31 armadillo repeat containing 3 69.92(n)
    65.42(a)
      420503  XM_003640661.2  XP_003640709.2 
    lizard
    (Anolis carolinensis)
    Reptilia ARMC36
    armadillo repeat containing 3
    64(a)
    1 ↔ 1
    6(16028888-16088746)
    tropical clawed frog
    (Xenopus tropicalis)
    Amphibia armc31 armadillo repeat containing 3 64.12(n)
    61.97(a)
      407950  NM_001001246.1  NP_001001246.1 
    zebrafish
    (Danio rerio)
    Actinopterygii armc31 armadillo repeat containing 3 55.5(n)
    51.03(a)
      560136  XM_683526.5  XP_688618.3 
    fruit fly
    (Drosophila melanogaster)
    Insecta CG51556
    --
    14(a)
    1 → many
    2L(7388537-7390902)


    ENSEMBL Gene Tree for ARMC3 (if available)
    TreeFam Gene Tree for ARMC3 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for ARMC3 gene
    ARMC42  

    Find genes that share paralogs with ARMC3           About GenesLikeMe



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for ARMC3 (see all 2289)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 10 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1819626981,2
    --23215124(+) TTGTAG/TAGAAA 1 -- us2k10--------
    rs1407265391,2
    --23215241(+) TATACA/TGCAGC 1 -- us2k10--------
    rs1848060471,2
    --23215441(+) AGGAAC/GAACAA 1 -- us2k10--------
    rs23648671,2
    C,F,A,H--23215455(+) CAAAGG/AGATTT 1 -- us2k1 tfbs315Minor allele frequency- A:0.21NS EA NA WA 1564
    rs1893871471,2
    --23215559(+) AATACA/GGGTGT 1 -- us2k10--------
    rs169161381,2
    C,F,H--23215573(+) TTATTC/TAAGGT 1 -- us2k1 tfbs319Minor allele frequency- T:0.04NA NS EA WA 1880
    rs1155072581,2
    C,F--23215711(+) CACACC/TGGATA 1 -- us2k11Minor allele frequency- T:0.03WA 118
    rs767215931,2
    C,F--23215838(+) ATTCTT/CAGGAC 1 -- us2k11Minor allele frequency- C:0.10WA 118
    rs1810034451,2
    --23215872(+) GGAGAC/TGGAAT 1 -- us2k10--------
    rs122500241,2
    C,H--23215887(+) AAAGTC/TTAAGA 1 -- us2k14Minor allele frequency- T:0.00NS EA 420

    HapMap Linkage Disequilibrium report for ARMC3 (23216953 - 23326518 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 2 variations for ARMC3:    About this table    
    Variant IDTypeSubtypePubMed ID
    esv2662526CNV Deletion23128226
    esv2734006CNV Deletion23290073

    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing ARMC3
    DNA2.0 Custom Variant and Variant Library Synthesis for ARMC3

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    OMIM gene information: 611226    OMIM disorders: --


    Find genes that share disorders with ARMC3           About GenesLikeMe

    Genetic Association Database (GAD): ARMC3
    Human Genome Epidemiology (HuGE) Navigator: ARMC3 (2 documents)

    Export disorders for ARMC3 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for ARMC3 gene, integrated from 10 sources (see all 13):
    (articles sorted by number of sources associating them with ARMC3)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PubMed id 20379614)1, 4 Rose J.E....Uhl G.R. (Mol. Med. 2010)
    2. Cloning and expression of ARMC3_v2, a novel splicing variant of the human ARMC3 gene. (PubMed id 16915934)1, 2 Li X.... Mao Y. (Genetika 2006)
    3. A scan of chromosome 10 identifies a novel locus showing strong association with late-onset Alzheimer disease. (PubMed id 16385451)1, 4 Grupe A....Goate A. (Am. J. Hum. Genet. 2006)
    4. A novel cancer testis antigen that is frequently expressed in pancreatic, lung, and endometrial cancers. (PubMed id 16397042)1, 2 Okada T.... Kawakami Y. (Clin. Cancer Res. 2006)
    5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (Nat. Genet. 2004)
    6. Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. (PubMed id 23382691)1 Lauc G....Rudan I. (PLoS Genet. 2013)
    7. Genome-wide association for smoking cessation success: participants in the Patch in Practice trial of nicotine replacement. (PubMed id 20235792)4 Uhl G.R....MunafA^ M.R. (Pharmacogenomics 2010)
    8. Large-scale proteomics and phosphoproteomics of urinary exosomes. (PubMed id 19056867)1 Gonzales P.A....Knepper M.A. (J. Am. Soc. Nephrol. 2009)
    9. Genome-wide association study of electrocardiographic and heart rate variability traits: the Framingham Heart Study. (PubMed id 17903306)4 Newton-Cheh C....Larson M.G. (BMC Med. Genet. 2007)
    10. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S.... Malek J. (Genome Res. 2004)

    (in PubMed, OMIM, and NCBI Bookshelf)
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    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 219681 HGNC: 30964 AceView: ARMC3 Ensembl:ENSG00000165309 euGenes: HUgn219681
    ECgene: ARMC3 H-InvDB: ARMC3

    (According to HUGE)
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    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for ARMC3 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for ARMC3 gene:
    Search GeneIP for patents involving ARMC3

    GeneCards and IP:
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