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Aliases for ARMC2-AS1 Gene

Subcategory (RNA class) for ARMC2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ARMC2-AS1 Gene

  • ARMC2 Antisense RNA 1 2 3 5
  • ARMC2 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for ARMC2-AS1 Gene

Previous GeneCards Identifiers for ARMC2-AS1 Gene

  • GC06M109245

Summaries for ARMC2-AS1 Gene

GeneCards Summary for ARMC2-AS1 Gene

ARMC2-AS1 (ARMC2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ARMC2-AS1 Gene

Genomics for ARMC2-AS1 Gene

Regulatory Elements for ARMC2-AS1 Gene

Enhancers for ARMC2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F108941 1 Ensembl ENCODE 12 -21.1 -21114 8.0 ATF1 PKNOX1 CBX3 RAD21 CHAMP1 CBX5 SCRT2 FOS MCM3 ZBTB2 ARMC2-AS1 RNU6-653P ARMC2 LACE1 PIR34191
GH06F108962 0.5 ENCODE 11.9 -38.0 -38030 0.2 ARMC2-AS1 PIR34191
GH06F108900 0.9 Ensembl ENCODE 11.5 +20.5 20542 6.7 PKNOX1 ATF1 CBX3 TBL1XR1 ZNF133 GATA4 RCOR1 CREM MIXL1 HMG20B ARMC2 ARMC2-AS1 RNU6-653P ATP5J2P2 RPS12P13
GH06F108895 1.3 FANTOM5 Ensembl ENCODE 11.3 +27.5 27533 2.9 ZNF76 KLF17 RAD21 ZEB1 YY1 FOS KLF7 ZNF280D SP3 YY2 ARMC2 RNU6-653P ARMC2-AS1 OSTM1-AS1 FOXO3 CD164 ATP5J2P2 RPS12P13
GH06F108966 1.5 FANTOM5 Ensembl ENCODE 11.2 -43.7 -43698 3.2 CTCF PKNOX1 ZNF223 MAX ZIC2 RFX5 HIC1 ZFHX2 GLIS2 PATZ1 ARMC2-AS1 RNU6-653P ENSG00000271730 AK9 FOXO3 MICAL1 SMPD2 PIR34191
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around ARMC2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for ARMC2-AS1 Gene

Chromosome:
6
Start:
108,908,140 bp from pter
End:
108,924,103 bp from pter
Size:
15,964 bases
Orientation:
Minus strand

Genomic View for ARMC2-AS1 Gene

Genes around ARMC2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ARMC2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ARMC2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ARMC2-AS1 Gene

Proteins for ARMC2-AS1 Gene

Post-translational modifications for ARMC2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ARMC2-AS1 Gene

Domains & Families for ARMC2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ARMC2-AS1 Gene

Function for ARMC2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ARMC2-AS1 Gene

Localization for ARMC2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ARMC2-AS1 Gene

Pathways & Interactions for ARMC2-AS1 Gene

SuperPathways for ARMC2-AS1 Gene

No Data Available

Interacting Proteins for ARMC2-AS1 Gene

Gene Ontology (GO) - Biological Process for ARMC2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ARMC2-AS1 Gene

Transcripts for ARMC2-AS1 Gene

mRNA/cDNA for ARMC2-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ARMC2-AS1 Gene

No ASD Table

Relevant External Links for ARMC2-AS1 Gene

GeneLoc Exon Structure for
ARMC2-AS1
ECgene alternative splicing isoforms for
ARMC2-AS1

Expression for ARMC2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ARMC2-AS1 Gene

genes like me logo Genes that share expression patterns with ARMC2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for ARMC2-AS1 Gene

Orthologs for ARMC2-AS1 Gene

Evolution for ARMC2-AS1 Gene

ENSEMBL:
Gene Tree for ARMC2-AS1 (if available)
TreeFam:
Gene Tree for ARMC2-AS1 (if available)

No data available for Orthologs for ARMC2-AS1 Gene

Paralogs for ARMC2-AS1 Gene

No data available for Paralogs for ARMC2-AS1 Gene

Variants for ARMC2-AS1 Gene

Sequence variations from dbSNP and Humsavar for ARMC2-AS1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1040849 -- 108,921,883(-) GCAAT(C/T)ATCTG intron-variant
rs111230444 -- 108,915,281(+) GCTTT(C/T)TTCAA intron-variant
rs111530237 -- 108,911,993(+) TCTTA(A/G)ATGTG intron-variant
rs11153136 -- 108,912,522(+) TGTGG(C/T)ACATT intron-variant, nc-transcript-variant, reference, synonymous-codon
rs111563591 -- 108,910,786(+) AACTT(C/T)TTCAT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ARMC2-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3610330 CNV loss 21293372
nsv830768 CNV gain 17160897

Relevant External Links for ARMC2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ARMC2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ARMC2-AS1 Gene

Disorders for ARMC2-AS1 Gene

Relevant External Links for ARMC2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ARMC2-AS1

No disorders were found for ARMC2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ARMC2-AS1 Gene

Publications for ARMC2-AS1 Gene

No publications were found for ARMC2-AS1 Gene.

Products for ARMC2-AS1 Gene

Sources for ARMC2-AS1 Gene

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