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Aliases for ARMC1 Gene

Aliases for ARMC1 Gene

  • Armadillo Repeat Containing 1 2 3
  • Arcp 3 4
  • Armadillo Repeat-Containing Protein 1 3
  • ARMC10 6
  • SVH 6

External Ids for ARMC1 Gene

Previous GeneCards Identifiers for ARMC1 Gene

  • GC08M066677
  • GC08M066515
  • GC08M062004

Summaries for ARMC1 Gene

GeneCards Summary for ARMC1 Gene

ARMC1 (Armadillo Repeat Containing 1) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ARMC1 Gene

Genomics for ARMC1 Gene

Regulatory Elements for ARMC1 Gene

Genomic Location for ARMC1 Gene

Start:
65,602,456 bp from pter
End:
65,634,217 bp from pter
Size:
31,762 bases
Orientation:
Minus strand

Genomic View for ARMC1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ARMC1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ARMC1 Gene

Proteins for ARMC1 Gene

  • Protein details for ARMC1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9NVT9-ARMC1_HUMAN
    Recommended name:
    Armadillo repeat-containing protein 1
    Protein Accession:
    Q9NVT9
    Secondary Accessions:
    • B4E2W7
    • Q9H018
    • Q9H820

    Protein attributes for ARMC1 Gene

    Size:
    282 amino acids
    Molecular mass:
    31281 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for ARMC1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ARMC1 Gene

Proteomics data for ARMC1 Gene at MOPED

Post-translational modifications for ARMC1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ARMC1 Gene

No data available for DME Specific Peptides for ARMC1 Gene

Domains for ARMC1 Gene

Gene Families for ARMC1 Gene

HGNC:
  • ARMC :Armadillo repeat containing

Protein Domains for ARMC1 Gene

Suggested Antigen Peptide Sequences for ARMC1 Gene

Graphical View of Domain Structure for InterPro Entry

Q9NVT9

UniProtKB/Swiss-Prot:

ARMC1_HUMAN :
  • Q9NVT9
Similarity:
  • Contains 1 ARM repeat.
genes like me logo Genes that share domains with ARMC1: view

Function for ARMC1 Gene

Gene Ontology (GO) - Molecular Function for ARMC1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005488 binding --
GO:0005515 protein binding IPI 25416956
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ARMC1: view
genes like me logo Genes that share phenotypes with ARMC1: view

Animal Model Products

CRISPR Products

miRNA for ARMC1 Gene

miRTarBase miRNAs that target ARMC1

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ARMC1

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for ARMC1 Gene

Localization for ARMC1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ARMC1 Gene COMPARTMENTS Subcellular localization image for ARMC1 gene
Compartment Confidence
nucleus 3
cytosol 2
mitochondrion 2

Gene Ontology (GO) - Cellular Components for ARMC1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005739 mitochondrion IEA --
genes like me logo Genes that share ontologies with ARMC1: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for ARMC1 Gene

Pathways for ARMC1 Gene

SuperPathways for ARMC1 Gene

No Data Available

Interacting Proteins for ARMC1 Gene

Gene Ontology (GO) - Biological Process for ARMC1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0030001 metal ion transport IEA --
genes like me logo Genes that share ontologies with ARMC1: view

No data available for Pathways by source for ARMC1 Gene

Transcripts for ARMC1 Gene

Unigene Clusters for ARMC1 Gene

Armadillo repeat containing 1:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ARMC1

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ARMC1 Gene

ExUns: 1a · 1b · 1c · 1d · 1e · 1f ^ 2 ^ 3a · 3b ^ 4 ^ 5a · 5b · 5c ^ 6a · 6b ^ 7 ^ 8
SP1: - -
SP2: -
SP3: - - -
SP4: -
SP5: - - -

Relevant External Links for ARMC1 Gene

GeneLoc Exon Structure for
ARMC1
ECgene alternative splicing isoforms for
ARMC1

Expression for ARMC1 Gene

mRNA expression in normal human tissues for ARMC1 Gene

Integrated Proteomics: protein expression from ProteomicsDB, MOPED, and MaxQB for ARMC1 Gene

SOURCE GeneReport for Unigene cluster for ARMC1 Gene Hs.269542

genes like me logo Genes that share expressions with ARMC1: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for ARMC1 Gene

Orthologs for ARMC1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ARMC1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ARMC1 35
  • 99.88 (n)
  • 100 (a)
ARMC1 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia ARMC1 35
  • 90.9 (n)
  • 98.94 (a)
ARMC1 36
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia ARMC1 35
  • 92.91 (n)
  • 98.94 (a)
ARMC1 36
  • 99 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Armc1 35
  • 90.07 (n)
  • 98.23 (a)
Armc1 16
Armc1 36
  • 98 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia ARMC1 36
  • 96 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia ARMC1 36
  • 95 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Armc1 35
  • 91.47 (n)
  • 98.21 (a)
chicken
(Gallus gallus)
Aves ARMC1 35
  • 83.51 (n)
  • 94.22 (a)
ARMC1 36
  • 94 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia ARMC1 36
  • 92 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia LOC398519 35
tropical clawed frog
(Silurana tropicalis)
Amphibia armc1 35
  • 77.45 (n)
  • 86.18 (a)
Str.20051 35
zebrafish
(Danio rerio)
Actinopterygii armc1 35
  • 71.29 (n)
  • 79.93 (a)
armc1 36
  • 79 (a)
OneToOne
sbcb398 35
sea squirt
(Ciona savignyi)
Ascidiacea CSA.8431 36
  • 34 (a)
OneToOne
Species with no ortholog for ARMC1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ARMC1 Gene

ENSEMBL:
Gene Tree for ARMC1 (if available)
TreeFam:
Gene Tree for ARMC1 (if available)

Paralogs for ARMC1 Gene

Pseudogenes.org Pseudogenes for ARMC1 Gene

genes like me logo Genes that share paralogs with ARMC1: view

No data available for Paralogs for ARMC1 Gene

Variants for ARMC1 Gene

Sequence variations from dbSNP and Humsavar for ARMC1 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type MAF
rs3268 -- 65,602,730(+) GAAGG(C/T)GGTTT utr-variant-3-prime
rs14213 -- 65,602,719(-) TTTCT(A/G)TAGCC utr-variant-3-prime
rs1053085 -- 65,603,753(-) ATTTT(A/G)ATAAA utr-variant-3-prime
rs1053087 -- 65,603,630(-) ATCAA(C/T)TCTTG utr-variant-3-prime
rs1053088 -- 65,603,548(-) ATCTC(C/T)GGCTA utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for ARMC1 Gene

Variant ID Type Subtype PubMed ID
nsv398101 CNV Loss 16902084
nsv398351 CNV Loss 16902084

Relevant External Links for ARMC1 Gene

HapMap Linkage Disequilibrium report
ARMC1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ARMC1 Gene

Disorders for ARMC1 Gene

(1) University of Copenhagen DISEASES for ARMC1 Gene

Relevant External Links for ARMC1

Genetic Association Database (GAD)
ARMC1
Human Genome Epidemiology (HuGE) Navigator
ARMC1
genes like me logo Genes that share disorders with ARMC1: view

No data available for UniProtKB/Swiss-Prot for ARMC1 Gene

Publications for ARMC1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 48
  4. Genetic variants in nuclear-encoded mitochondrial genes influence AIDS progression. (PMID: 20877624) Hendrickson S.L. … O'Brien S.J. (PLoS ONE 2010) 3 48
  5. Mass spectrometric analysis of lysine ubiquitylation reveals promiscuity at site level. (PMID: 21139048) Danielsen J.M. … Nielsen M.L. (Mol. Cell Proteomics 2011) 3

Products for ARMC1 Gene

Sources for ARMC1 Gene

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