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Aliases for ARMC1 Gene

Aliases for ARMC1 Gene

  • Armadillo Repeat Containing 1 2 3 5
  • Arcp 3 4

External Ids for ARMC1 Gene

Previous GeneCards Identifiers for ARMC1 Gene

  • GC08M066677
  • GC08M066515
  • GC08M062004

Summaries for ARMC1 Gene

GeneCards Summary for ARMC1 Gene

ARMC1 (Armadillo Repeat Containing 1) is a Protein Coding gene. GO annotations related to this gene include binding.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ARMC1 Gene

Genomics for ARMC1 Gene

Regulatory Elements for ARMC1 Gene

Promoters for ARMC1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around ARMC1 on UCSC Golden Path with GeneCards custom track

Genomic Location for ARMC1 Gene

Chromosome:
8
Start:
65,602,456 bp from pter
End:
65,634,217 bp from pter
Size:
31,762 bases
Orientation:
Minus strand

Genomic View for ARMC1 Gene

Genes around ARMC1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ARMC1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ARMC1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ARMC1 Gene

Proteins for ARMC1 Gene

  • Protein details for ARMC1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9NVT9-ARMC1_HUMAN
    Recommended name:
    Armadillo repeat-containing protein 1
    Protein Accession:
    Q9NVT9
    Secondary Accessions:
    • B4E2W7
    • Q9H018
    • Q9H820

    Protein attributes for ARMC1 Gene

    Size:
    282 amino acids
    Molecular mass:
    31281 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for ARMC1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ARMC1 Gene

Proteomics data for ARMC1 Gene at MOPED

Post-translational modifications for ARMC1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ARMC1 Gene

No data available for DME Specific Peptides for ARMC1 Gene

Domains & Families for ARMC1 Gene

Gene Families for ARMC1 Gene

Protein Domains for ARMC1 Gene

Suggested Antigen Peptide Sequences for ARMC1 Gene

Graphical View of Domain Structure for InterPro Entry

Q9NVT9

UniProtKB/Swiss-Prot:

ARMC1_HUMAN :
  • Contains 1 ARM repeat.
Similarity:
  • Contains 1 ARM repeat.
genes like me logo Genes that share domains with ARMC1: view

Function for ARMC1 Gene

genes like me logo Genes that share phenotypes with ARMC1: view

Animal Model Products

miRNA for ARMC1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ARMC1 Gene

Localization for ARMC1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ARMC1 Gene COMPARTMENTS Subcellular localization image for ARMC1 gene
Compartment Confidence
mitochondrion 3
nucleus 3
cytosol 2

Gene Ontology (GO) - Cellular Components for ARMC1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IBA --
genes like me logo Genes that share ontologies with ARMC1: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for ARMC1 Gene

Pathways & Interactions for ARMC1 Gene

SuperPathways for ARMC1 Gene

No Data Available

Interacting Proteins for ARMC1 Gene

Gene Ontology (GO) - Biological Process for ARMC1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ARMC1 Gene

Drugs & Compounds for ARMC1 Gene

No Compound Related Data Available

Transcripts for ARMC1 Gene

Unigene Clusters for ARMC1 Gene

Armadillo repeat containing 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ARMC1 Gene

ExUns: 1a · 1b · 1c · 1d · 1e · 1f ^ 2 ^ 3a · 3b ^ 4 ^ 5a · 5b · 5c ^ 6a · 6b ^ 7 ^ 8
SP1: - -
SP2: -
SP3: - - -
SP4: -
SP5: - - -

Relevant External Links for ARMC1 Gene

GeneLoc Exon Structure for
ARMC1
ECgene alternative splicing isoforms for
ARMC1

Expression for ARMC1 Gene

mRNA expression in normal human tissues for ARMC1 Gene

Protein differential expression in normal tissues from HIPED for ARMC1 Gene

This gene is overexpressed in Skin (7.2) and Bone marrow stromal cell (6.4).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MOPED, and MaxQB for ARMC1 Gene



SOURCE GeneReport for Unigene cluster for ARMC1 Gene Hs.269542

genes like me logo Genes that share expression patterns with ARMC1: view

Protein tissue co-expression partners for ARMC1 Gene

- Elite partner

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for ARMC1 Gene

Orthologs for ARMC1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ARMC1 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia ARMC1 35
  • 90.9 (n)
  • 98.94 (a)
ARMC1 36
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia ARMC1 35
  • 92.91 (n)
  • 98.94 (a)
ARMC1 36
  • 99 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Armc1 35
  • 90.07 (n)
  • 98.23 (a)
Armc1 16
Armc1 36
  • 98 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia ARMC1 35
  • 99.88 (n)
  • 100 (a)
ARMC1 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Armc1 35
  • 91.47 (n)
  • 98.21 (a)
oppossum
(Monodelphis domestica)
Mammalia ARMC1 36
  • 96 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia ARMC1 36
  • 95 (a)
OneToOne
chicken
(Gallus gallus)
Aves ARMC1 35
  • 83.51 (n)
  • 94.22 (a)
ARMC1 36
  • 94 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia ARMC1 36
  • 92 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia armc1 35
  • 77.45 (n)
  • 86.18 (a)
Str.20051 35
African clawed frog
(Xenopus laevis)
Amphibia LOC398519 35
zebrafish
(Danio rerio)
Actinopterygii armc1 35
  • 71.29 (n)
  • 79.93 (a)
sbcb398 35
armc1 36
  • 79 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea CSA.8431 36
  • 34 (a)
OneToOne
Species with no ortholog for ARMC1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ARMC1 Gene

ENSEMBL:
Gene Tree for ARMC1 (if available)
TreeFam:
Gene Tree for ARMC1 (if available)

Paralogs for ARMC1 Gene

Pseudogenes.org Pseudogenes for ARMC1 Gene

genes like me logo Genes that share paralogs with ARMC1: view

No data available for Paralogs for ARMC1 Gene

Variants for ARMC1 Gene

Sequence variations from dbSNP and Humsavar for ARMC1 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs14213 -- 65,602,719(-) TTTCT(A/G/T)TAGCC utr-variant-3-prime
rs3268 -- 65,602,730(+) GAAGG(C/T)GGTTT utr-variant-3-prime
rs1053085 -- 65,603,753(-) ATTTT(A/G)ATAAA utr-variant-3-prime
rs1053087 -- 65,603,630(-) ATCAA(C/T)TCTTG utr-variant-3-prime
rs1053088 -- 65,603,548(-) ATCTC(C/T)GGCTA utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for ARMC1 Gene

Variant ID Type Subtype PubMed ID
nsv398101 CNV Loss 16902084
nsv398351 CNV Loss 16902084

Variation tolerance for ARMC1 Gene

Residual Variation Intolerance Score: 53.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.68; 14.48% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ARMC1 Gene

HapMap Linkage Disequilibrium report
ARMC1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ARMC1 Gene

Disorders for ARMC1 Gene

Relevant External Links for ARMC1

Genetic Association Database (GAD)
ARMC1
Human Genome Epidemiology (HuGE) Navigator
ARMC1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ARMC1

No disorders were found for ARMC1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ARMC1 Gene

Publications for ARMC1 Gene

  1. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 48 67
  2. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3
  3. Panorama of ancient metazoan macromolecular complexes. (PMID: 26344197) Wan C. … Emili A. (Nature 2015) 3
  4. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3
  5. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie A.G. … Butte N.F. (PLoS ONE 2012) 3

Products for ARMC1 Gene

Sources for ARMC1 Gene

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