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Aliases for ARL8B Gene

Aliases for ARL8B Gene

  • ADP-Ribosylation Factor-Like 8B 2 3
  • Novel Small G Protein Indispensable For Equal Chromosome Segregation 1 3 4
  • ADP-Ribosylation Factor-Like Protein 10C 3 4
  • ADP-Ribosylation Factor-Like 10C 2 3
  • ARL10C 3 4
  • Gie1 3 4
  • ADP-Ribosylation Factor-Like Protein 8B 3

External Ids for ARL8B Gene

Previous HGNC Symbols for ARL8B Gene

  • ARL10C

Previous GeneCards Identifiers for ARL8B Gene

  • GC03P005139
  • GC03P005163
  • GC03P005096

Summaries for ARL8B Gene

GeneCards Summary for ARL8B Gene

ARL8B (ADP-Ribosylation Factor-Like 8B) is a Protein Coding gene. GO annotations related to this gene include GTP binding and GDP binding. An important paralog of this gene is ARL1.

UniProtKB/Swiss-Prot for ARL8B Gene

  • May play a role in lysosome motility (PubMed:16537643). May play a role in chromosome segregation (PubMed:15331635).

Gene Wiki entry for ARL8B Gene

No data available for Entrez Gene Summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ARL8B Gene

Genomics for ARL8B Gene

Regulatory Elements for ARL8B Gene

Genomic Location for ARL8B Gene

Start:
5,122,220 bp from pter
End:
5,180,916 bp from pter
Size:
58,697 bases
Orientation:
Plus strand

Genomic View for ARL8B Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ARL8B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ARL8B Gene

Proteins for ARL8B Gene

  • Protein details for ARL8B Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9NVJ2-ARL8B_HUMAN
    Recommended name:
    ADP-ribosylation factor-like protein 8B
    Protein Accession:
    Q9NVJ2
    Secondary Accessions:
    • B4DI85

    Protein attributes for ARL8B Gene

    Size:
    186 amino acids
    Molecular mass:
    21539 Da
    Quaternary structure:
    • Interacts with tubulin.

    Three dimensional structures from OCA and Proteopedia for ARL8B Gene

    Alternative splice isoforms for ARL8B Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ARL8B Gene

Proteomics data for ARL8B Gene at MOPED

Post-translational modifications for ARL8B Gene

  • Ubiquitination at Lys141, Lys146, and Lys182
  • Modification sites at PhosphoSitePlus

Other Protein References for ARL8B Gene

No data available for DME Specific Peptides for ARL8B Gene

Domains for ARL8B Gene

Gene Families for ARL8B Gene

HGNC:
  • ARF :ADP-ribosylation factors
  • ARL :ADP-ribosylation factors-like

Protein Domains for ARL8B Gene

Graphical View of Domain Structure for InterPro Entry

Q9NVJ2

UniProtKB/Swiss-Prot:

ARL8B_HUMAN :
  • Q9NVJ2
Family:
  • Belongs to the small GTPase superfamily. Arf family.
genes like me logo Genes that share domains with ARL8B: view

Function for ARL8B Gene

Molecular function for ARL8B Gene

UniProtKB/Swiss-Prot Function: May play a role in lysosome motility (PubMed:16537643). May play a role in chromosome segregation (PubMed:15331635).

Gene Ontology (GO) - Molecular Function for ARL8B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003924 GTPase activity NAS 15331635
GO:0004871 signal transducer activity --
GO:0005525 GTP binding IDA 15331635
GO:0019001 guanyl nucleotide binding --
GO:0019003 GDP binding IDA 15331635
genes like me logo Genes that share ontologies with ARL8B: view

miRNA for ARL8B Gene

miRTarBase miRNAs that target ARL8B

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for ARL8B Gene

Localization for ARL8B Gene

Subcellular locations from UniProtKB/Swiss-Prot for ARL8B Gene

Late endosome membrane. Lysosome membrane. Cytoplasm, cytoskeleton, spindle. Note=According to PubMed:15331635, it localizes with microtubules at the spindle mid-zone during mitosis.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ARL8B Gene COMPARTMENTS Subcellular localization image for ARL8B gene
Compartment Confidence
cytoskeleton 5
endosome 5
lysosome 5
vacuole 5
cytosol 3
nucleus 2
extracellular 1
mitochondrion 1

Gene Ontology (GO) - Cellular Components for ARL8B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular --
GO:0005634 nucleus --
GO:0005737 cytoplasm IDA 15331635
GO:0005764 lysosome --
GO:0005765 lysosomal membrane IEA --
genes like me logo Genes that share ontologies with ARL8B: view

Pathways for ARL8B Gene

SuperPathways for ARL8B Gene

No Data Available

Interacting Proteins for ARL8B Gene

Gene Ontology (GO) - Biological Process for ARL8B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006184 obsolete GTP catabolic process --
GO:0006886 intracellular protein transport --
GO:0007049 cell cycle IEA --
GO:0007059 chromosome segregation IMP 14871887
GO:0007165 signal transduction --
genes like me logo Genes that share ontologies with ARL8B: view

No data available for Pathways by source for ARL8B Gene

Transcripts for ARL8B Gene

Unigene Clusters for ARL8B Gene

ADP-ribosylation factor-like 8B:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ARL8B Gene

ExUns: 1a · 1b · 1c · 1d · 1e ^ 2 ^ 3a · 3b · 3c · 3d ^ 4 ^ 5a · 5b ^ 6a · 6b · 6c · 6d ^ 7a · 7b ^ 8a · 8b
SP1: - -
SP2: - -
SP3: - - - -
SP4: - - -
SP5: - - - - - - - -
SP6: -
SP7: - - -
SP8: - - - - - -
SP9: -

Relevant External Links for ARL8B Gene

GeneLoc Exon Structure for
ARL8B
ECgene alternative splicing isoforms for
ARL8B

Expression for ARL8B Gene

mRNA expression in normal human tissues for ARL8B Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for ARL8B Gene

SOURCE GeneReport for Unigene cluster for ARL8B Gene Hs.250009

mRNA Expression by UniProt/SwissProt for ARL8B Gene

Q9NVJ2-ARL8B_HUMAN
Tissue specificity: Ubiquitously expressed.
genes like me logo Genes that share expressions with ARL8B: view

No data available for mRNA differential expression in normal tissues for ARL8B Gene

Orthologs for ARL8B Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for ARL8B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ARL8B 35
  • 100 (n)
  • 100 (a)
ARL8B 36
  • 78 (a)
OneToOne
cow
(Bos Taurus)
Mammalia ARL8B 35
  • 96.59 (n)
  • 99.46 (a)
ARL8B 36
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia ARL8B 35
  • 96.59 (n)
  • 100 (a)
ARL8B 36
  • 100 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Arl8b 35
  • 94.62 (n)
  • 100 (a)
Arl8b 16
Arl8b 36
  • 100 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia ARL8B 36
  • 94 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia ARL8B 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Arl8b 35
  • 93.91 (n)
  • 100 (a)
chicken
(Gallus gallus)
Aves ARL8A 36
  • 98 (a)
OneToOne
ARL8B 35
  • 89.61 (n)
  • 98.39 (a)
lizard
(Anolis carolinensis)
Reptilia ARL8B 36
  • 98 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia arl8b 35
  • 81.36 (n)
  • 96.24 (a)
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.5047 35
zebrafish
(Danio rerio)
Actinopterygii arl8ba 36
  • 97 (a)
OneToMany
arl8bb 35
  • 78.85 (n)
  • 94.09 (a)
arl8bb 36
  • 90 (a)
OneToMany
Dr.19764 35
fruit fly
(Drosophila melanogaster)
Insecta Gie 36
  • 87 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea arl-8 36
  • 85 (a)
OneToMany
thale cress
(Arabidopsis thaliana)
eudicotyledons ARLA1A 35
  • 62.27 (n)
  • 64.29 (a)
barley
(Hordeum vulgare)
Liliopsida Hv.9524 35
rice
(Oryza sativa)
Liliopsida Os.9284 35
Os02g0732500 35
  • 60.87 (n)
  • 61.41 (a)
sea squirt
(Ciona savignyi)
Ascidiacea CSA.4095 36
  • 85 (a)
OneToOne
Species with no ortholog for ARL8B:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for ARL8B Gene

ENSEMBL:
Gene Tree for ARL8B (if available)
TreeFam:
Gene Tree for ARL8B (if available)

Paralogs for ARL8B Gene

Paralogs for ARL8B Gene

Pseudogenes.org Pseudogenes for ARL8B Gene

genes like me logo Genes that share paralogs with ARL8B: view

Variants for ARL8B Gene

Sequence variations from dbSNP and Humsavar for ARL8B Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type MAF
rs341983 -- 5,169,567(-) gaaaa(A/G)aaaaa intron-variant
rs341991 -- 5,159,158(+) agcca(A/G)acgtg intron-variant
rs341992 -- 5,161,251(+) GTCCC(A/C)TAAGG intron-variant
rs397188 -- 5,151,872(+) ggctc(A/G)cacga intron-variant
rs422430 -- 5,166,764(-) TCAGA(A/T)ATGAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ARL8B Gene

Variant ID Type Subtype PubMed ID
esv2671785 CNV Deletion 23128226
esv2484755 CNV Deletion 19546169

Relevant External Links for ARL8B Gene

HapMap Linkage Disequilibrium report
ARL8B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ARL8B Gene

Disorders for ARL8B Gene

No disorders were found for ARL8B Gene.

No data available for UniProtKB/Swiss-Prot for ARL8B Gene

Publications for ARL8B Gene

  1. Novel small GTPase subfamily capable of associating with tubulin is required for chromosome segregation. (PMID: 15331635) Okai T. … Katada T. (J. Cell Sci. 2004) 3 4 23
  2. An N-terminally acetylated Arf-like GTPase is localised to lysosomes and affects their motility. (PMID: 16537643) Hofmann I. … Munro S. (J. Cell Sci. 2006) 3 4 23
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4

Products for ARL8B Gene

  • Addgene plasmids for ARL8B

Sources for ARL8B Gene

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