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Aliases for ARL4A Gene

Aliases for ARL4A Gene

  • ADP-Ribosylation Factor-Like 4A 2 3
  • ARL4 3 4 6
  • ADP-Ribosylation Factor-Like 4 2 3
  • ADP-Ribosylation Factor-Like Protein 4A 3

External Ids for ARL4A Gene

Previous HGNC Symbols for ARL4A Gene

  • ARL4

Previous GeneCards Identifiers for ARL4A Gene

  • GC07P012471
  • GC07P012499
  • GC07P012693
  • GC07P012726

Summaries for ARL4A Gene

Entrez Gene Summary for ARL4A Gene

  • ADP-ribosylation factor-like 4A is a member of the ADP-ribosylation factor family of GTP-binding proteins. ARL4A is similar to ARL4C and ARL4D and each has a nuclear localization signal and an unusually high guaninine nucleotide exchange rate. ARL4A is located in both the nuclear and extranuclear cell compartments. Multiple transcript variants encoding the same protein have been found for this gene. [provided by RefSeq, Jul 2008]

GeneCards Summary for ARL4A Gene

ARL4A (ADP-Ribosylation Factor-Like 4A) is a Protein Coding gene. GO annotations related to this gene include GTP binding. An important paralog of this gene is ARL11.

UniProtKB/Swiss-Prot for ARL4A Gene

  • Small GTP-binding protein which cycles between an inactive GDP-bound and an active GTP-bound form, and the rate of cycling is regulated by guanine nucleotide exchange factors (GEF) and GTPase-activating proteins (GAP). GTP-binding protein that does not act as an allosteric activator of the cholera toxin catalytic subunit. Recruits CYTH1, CYTH2, CYTH3 and CYTH4 to the plasma membrane in GDP-bound form.

Gene Wiki entry for ARL4A Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ARL4A Gene

Genomics for ARL4A Gene

Regulatory Elements for ARL4A Gene

Genomic Location for ARL4A Gene

Start:
12,686,827 bp from pter
End:
12,690,934 bp from pter
Size:
4,108 bases
Orientation:
Plus strand

Genomic View for ARL4A Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ARL4A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ARL4A Gene

Proteins for ARL4A Gene

  • Protein details for ARL4A Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P40617-ARL4A_HUMAN
    Recommended name:
    ADP-ribosylation factor-like protein 4A
    Protein Accession:
    P40617
    Secondary Accessions:
    • A4D119
    • P80418
    • Q49AF5

    Protein attributes for ARL4A Gene

    Size:
    200 amino acids
    Molecular mass:
    22615 Da
    Quaternary structure:
    • Interacts with CYTH2. Interacts with KPNA2; the interaction is direct. Does not interacts with ARL4A.

neXtProt entry for ARL4A Gene

Proteomics data for ARL4A Gene at MOPED

Post-translational modifications for ARL4A Gene

No data available for DME Specific Peptides for ARL4A Gene

Domains for ARL4A Gene

Gene Families for ARL4A Gene

HGNC:
  • ARF :ADP-ribosylation factors
  • ARL :ADP-ribosylation factors-like

Suggested Antigen Peptide Sequences for ARL4A Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

P40617

UniProtKB/Swiss-Prot:

ARL4A_HUMAN :
  • P40617
Family:
  • Belongs to the small GTPase superfamily. Arf family.
genes like me logo Genes that share domains with ARL4A: view

Function for ARL4A Gene

Molecular function for ARL4A Gene

UniProtKB/Swiss-Prot Function: Small GTP-binding protein which cycles between an inactive GDP-bound and an active GTP-bound form, and the rate of cycling is regulated by guanine nucleotide exchange factors (GEF) and GTPase-activating proteins (GAP). GTP-binding protein that does not act as an allosteric activator of the cholera toxin catalytic subunit. Recruits CYTH1, CYTH2, CYTH3 and CYTH4 to the plasma membrane in GDP-bound form.

Gene Ontology (GO) - Molecular Function for ARL4A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003924 GTPase activity --
GO:0005515 protein binding IPI 10980193
GO:0005525 GTP binding IDA 10980193
genes like me logo Genes that share ontologies with ARL4A: view
genes like me logo Genes that share phenotypes with ARL4A: view

Animal Models for ARL4A Gene

MGI Knock Outs for ARL4A:

miRNA for ARL4A Gene

miRTarBase miRNAs that target ARL4A

No data available for Enzyme Numbers (IUBMB) , Transcription Factor Targeting and HOMER Transcription for ARL4A Gene

Localization for ARL4A Gene

Subcellular locations from UniProtKB/Swiss-Prot for ARL4A Gene

Cell membrane. Cytoplasm. Nucleus, nucleolus. Note=Localization in the nucleolus is dependent by nucleotide binding.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ARL4A Gene COMPARTMENTS Subcellular localization image for ARL4A gene
Compartment Confidence
nucleus 5
plasma membrane 5
cytosol 3
extracellular 1
mitochondrion 1

Gene Ontology (GO) - Cellular Components for ARL4A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular --
GO:0005634 nucleus IDA 10980193
GO:0005730 nucleolus IDA 10980193
GO:0005737 cytoplasm IEA --
GO:0005886 plasma membrane IDA 17398095
genes like me logo Genes that share ontologies with ARL4A: view

Pathways for ARL4A Gene

SuperPathways for ARL4A Gene

No Data Available

Gene Ontology (GO) - Biological Process for ARL4A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006184 obsolete GTP catabolic process --
GO:0006886 intracellular protein transport --
GO:0007165 signal transduction --
GO:0007264 small GTPase mediated signal transduction IEA --
GO:0015031 protein transport --
genes like me logo Genes that share ontologies with ARL4A: view

No data available for Pathways by source for ARL4A Gene

Transcripts for ARL4A Gene

Unigene Clusters for ARL4A Gene

ADP-ribosylation factor-like 4A:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ARL4A Gene

No ASD Table

Relevant External Links for ARL4A Gene

GeneLoc Exon Structure for
ARL4A
ECgene alternative splicing isoforms for
ARL4A

Expression for ARL4A Gene

mRNA expression in normal human tissues for ARL4A Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for ARL4A Gene

This gene is overexpressed in Testis (5.6).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for ARL4A Gene

SOURCE GeneReport for Unigene cluster for ARL4A Gene Hs.245540

genes like me logo Genes that share expressions with ARL4A: view

No data available for mRNA Expression by UniProt/SwissProt for ARL4A Gene

Orthologs for ARL4A Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for ARL4A Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ARL4A 35
  • 99.5 (n)
  • 100 (a)
ARL4A 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia ARL4A 35
  • 94.5 (n)
  • 99.5 (a)
ARL4A 36
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia ARL4A 36
  • 100 (a)
OneToOne
LOC100684100 35
  • 94.67 (n)
  • 99.5 (a)
mouse
(Mus musculus)
Mammalia Arl4a 35
  • 92.5 (n)
  • 99.5 (a)
Arl4a 16
Arl4a 36
  • 100 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia ARL4A 36
  • 85 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Arl4a 35
  • 93.33 (n)
  • 99.5 (a)
chicken
(Gallus gallus)
Aves ARL4A 35
  • 80.83 (n)
  • 96.5 (a)
ARL4A 36
  • 97 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia ARL4A 36
  • 95 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia arl4a 35
  • 79.33 (n)
  • 89 (a)
Str.10753 35
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.6635 35
zebrafish
(Danio rerio)
Actinopterygii arl4ab 35
  • 69.83 (n)
  • 80.5 (a)
arl4ab 36
  • 80 (a)
OneToOne
zgc77800 35
fruit fly
(Drosophila melanogaster)
Insecta CG2219 35
  • 60.16 (n)
  • 59.53 (a)
CG2219 36
  • 38 (a)
OneToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes ARF3 36
  • 40 (a)
OneToMany
Species with no ortholog for ARL4A:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ARL4A Gene

ENSEMBL:
Gene Tree for ARL4A (if available)
TreeFam:
Gene Tree for ARL4A (if available)

Paralogs for ARL4A Gene

Paralogs for ARL4A Gene

Selected SIMAP similar genes for ARL4A Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with ARL4A: view

Variants for ARL4A Gene

Sequence variations from dbSNP and Humsavar for ARL4A Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type MAF
rs14730 -- 12,689,072(+) CAAAT(C/T)TTTTG utr-variant-3-prime
rs1058268 -- 12,689,644(+) ACTTT(C/G)ACTTG utr-variant-3-prime
rs2033602 -- 12,685,073(-) AATAT(C/G)CTAGT upstream-variant-2KB
rs2033603 -- 12,684,845(-) GCCCG(A/G)GAGGC upstream-variant-2KB
rs2241748 -- 12,689,352(-) TTACT(C/T)CTTGT utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for ARL4A Gene

Variant ID Type Subtype PubMed ID
nsv830907 CNV Loss 17160897
nsv830908 CNV Gain 17160897

Relevant External Links for ARL4A Gene

HapMap Linkage Disequilibrium report
ARL4A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ARL4A Gene

Disorders for ARL4A Gene

Relevant External Links for ARL4A

Genetic Association Database (GAD)
ARL4A
genes like me logo Genes that share disorders with ARL4A: view

No data available for UniProtKB/Swiss-Prot for ARL4A Gene

Publications for ARL4A Gene

  1. Human chromosome 7: DNA sequence and biology. (PMID: 12690205) Scherer S.W. … Tsui L.-C. (Science 2003) 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. The Arl4 family of small G proteins can recruit the cytohesin Arf6 exchange factors to the plasma membrane. (PMID: 17398095) Hofmann I. … Munro S. (Curr. Biol. 2007) 3 4
  4. ADP-ribosylation factor (ARF)-like 4, 6, and 7 represent a subgroup of the ARF family characterization by rapid nucleotide exchange and a nuclear localization signal. (PMID: 10462049) Jacobs S. … Joost H.-G. (FEBS Lett. 1999) 3 4
  5. ARL4, an ARF-like protein that is developmentally regulated and localized to nuclei and nucleoli. (PMID: 10980193) Lin C.Y. … Lee F.J. (J. Biol. Chem. 2000) 3 4

Products for ARL4A Gene

Sources for ARL4A Gene

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