Free for academic non-profit institutions. Other users need a Commercial license

Aliases for ARL2-SNX15 Gene

Subcategory (RNA class) for ARL2-SNX15 Gene

ncRNA

Quality Score for this RNA gene is

3

Aliases for ARL2-SNX15 Gene

  • ARL2-SNX15 Readthrough (NMD Candidate) 2 3

External Ids for ARL2-SNX15 Gene

Previous GeneCards Identifiers for ARL2-SNX15 Gene

  • GC11U901787
  • GC11P064783
  • GC11P064784

Summaries for ARL2-SNX15 Gene

Entrez Gene Summary for ARL2-SNX15 Gene

  • This locus represents naturally occurring read-through transcription between the neighboring ADP-ribosylation factor-like 2 (ARL2) and sorting nexin 15 (SNX15) genes on chromosome 11. The read-through transcript is a candidate for nonsense-mediated mRNA decay (NMD), and is therefore unlikely to produce a protein product. [provided by RefSeq, Dec 2010]

GeneCards Summary for ARL2-SNX15 Gene

ARL2-SNX15 (ARL2-SNX15 Readthrough (NMD Candidate)) is an RNA Gene, and is affiliated with the ncRNA class. An important paralog of this gene is ENSG00000272822.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ARL2-SNX15 Gene

Genomics for ARL2-SNX15 Gene

Genomic Location for ARL2-SNX15 Gene

Start:
65,014,113 bp from pter
End:
65,040,572 bp from pter
Size:
26,460 bases
Orientation:
Plus strand

Genomic View for ARL2-SNX15 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ARL2-SNX15 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ARL2-SNX15 Gene

No data available for Regulatory Elements for ARL2-SNX15 Gene

Proteins for ARL2-SNX15 Gene

  • Protein details for ARL2-SNX15 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    V9GYD0
    Recommended name:
    Protein ARL2-SNX15
    Protein Accession:
    V9GYD0
    Secondary Accessions:

    Protein attributes for ARL2-SNX15 Gene

    Size:
    113 amino acids
    Molecular mass:
    13176 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ARL2-SNX15 Gene

Proteomics data for ARL2-SNX15 Gene at MOPED

Post-translational modifications for ARL2-SNX15 Gene

No Post-translational modifications

Other Protein References for ARL2-SNX15 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for ARL2-SNX15 Gene

Domains for ARL2-SNX15 Gene

Protein Domains for ARL2-SNX15 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ARL2-SNX15: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ARL2-SNX15 Gene

Function for ARL2-SNX15 Gene

Gene Ontology (GO) - Molecular Function for ARL2-SNX15 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003924 GTPase activity --
GO:0004871 signal transducer activity --
GO:0005525 GTP binding --
GO:0019001 guanyl nucleotide binding --
GO:0031683 G-protein beta/gamma-subunit complex binding --
genes like me logo Genes that share ontologies with ARL2-SNX15: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for ARL2-SNX15 Gene

Localization for ARL2-SNX15 Gene

Gene Ontology (GO) - Cellular Components for ARL2-SNX15 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular --
GO:0005634 nucleus --
GO:0005737 cytoplasm --
genes like me logo Genes that share ontologies with ARL2-SNX15: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for ARL2-SNX15 Gene

Pathways for ARL2-SNX15 Gene

SuperPathways for ARL2-SNX15 Gene

No Data Available

Interacting Proteins for ARL2-SNX15 Gene

Gene Ontology (GO) - Biological Process for ARL2-SNX15 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007186 G-protein coupled receptor signaling pathway --
GO:0007264 small GTPase mediated signal transduction --
genes like me logo Genes that share ontologies with ARL2-SNX15: view

No data available for Pathways by source for ARL2-SNX15 Gene

Transcripts for ARL2-SNX15 Gene

mRNA/cDNA for ARL2-SNX15 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ARL2-SNX15 Gene

No ASD Table

Relevant External Links for ARL2-SNX15 Gene

GeneLoc Exon Structure for
ARL2-SNX15
ECgene alternative splicing isoforms for
ARL2-SNX15

Expression for ARL2-SNX15 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for ARL2-SNX15 Gene

Orthologs for ARL2-SNX15 Gene

This gene was present in the common ancestor of animals.

Orthologs for ARL2-SNX15 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 36
  • 58 (a)
OneToOne
cow
(Bos Taurus)
Mammalia ARL2 36
  • 61 (a)
OneToMany
dog
(Canis familiaris)
Mammalia -- 36
  • 74 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Arl2 36
  • 61 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 60 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 38 (a)
OneToMany
chicken
(Gallus gallus)
Aves -- 36
  • 28 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 52 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii arl2 36
  • 54 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta Arf84F 36
  • 50 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea evl-20 36
  • 41 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea CSA.2707 36
  • 54 (a)
OneToMany
Species with no ortholog for ARL2-SNX15:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for ARL2-SNX15 Gene

ENSEMBL:
Gene Tree for ARL2-SNX15 (if available)
TreeFam:
Gene Tree for ARL2-SNX15 (if available)

Paralogs for ARL2-SNX15 Gene

Paralogs for ARL2-SNX15 Gene

genes like me logo Genes that share paralogs with ARL2-SNX15: view

Variants for ARL2-SNX15 Gene

Sequence variations from dbSNP and Humsavar for ARL2-SNX15 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type MAF
rs484147 -- 65,025,091(-) GCACT(C/T)TGGGA intron-variant
rs484182 -- 65,025,072(-) CGGGC(A/G)GATTA intron-variant
rs486984 -- 65,024,782(-) AGGGC(C/T)TGGGA intron-variant
rs575858 -- 65,023,388(+) tatta(C/T)tttca intron-variant
rs598241 -- 65,024,113(+) gagac(A/C)atcct intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ARL2-SNX15 Gene

Variant ID Type Subtype PubMed ID
nsv526181 CNV Gain 19592680
dgv1174n71 CNV Loss 21882294

Relevant External Links for ARL2-SNX15 Gene

HapMap Linkage Disequilibrium report
ARL2-SNX15

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ARL2-SNX15 Gene

Disorders for ARL2-SNX15 Gene

No disorders were found for ARL2-SNX15 Gene.

No data available for UniProtKB/Swiss-Prot for ARL2-SNX15 Gene

Publications for ARL2-SNX15 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  2. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PMID: 20967262) Prakash T. … Taylor T.D. (PLoS ONE 2010) 3

Products for ARL2-SNX15 Gene

Sources for ARL2-SNX15 Gene

Back to Top

Content