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Aliases for ARL13A Gene

Aliases for ARL13A Gene

  • ADP-Ribosylation Factor-Like 13A 2 3
  • ADP-Ribosylation Factor-Like 13 2 3
  • ADP-Ribosylation Factor-Like Protein 13A 3
  • DJ341D10.2 3
  • ARL13 3

External Ids for ARL13A Gene

Previous HGNC Symbols for ARL13A Gene

  • ARL13

Previous GeneCards Identifiers for ARL13A Gene

  • GC0XP100035
  • GC0XP100111
  • GC0XP100224
  • GC0XP090022

Summaries for ARL13A Gene

GeneCards Summary for ARL13A Gene

ARL13A (ADP-Ribosylation Factor-Like 13A) is a Protein Coding gene. GO annotations related to this gene include GTP binding. An important paralog of this gene is ARL13B.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ARL13A Gene

Genomics for ARL13A Gene

Regulatory Elements for ARL13A Gene

Genomic Location for ARL13A Gene

Start:
100,969,708 bp from pter
End:
100,991,089 bp from pter
Size:
21,382 bases
Orientation:
Plus strand

Genomic View for ARL13A Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ARL13A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ARL13A Gene

Proteins for ARL13A Gene

  • Protein details for ARL13A Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5H913-AR13A_HUMAN
    Recommended name:
    ADP-ribosylation factor-like protein 13A
    Protein Accession:
    Q5H913
    Secondary Accessions:
    • B2RTT6
    • B4DX50

    Protein attributes for ARL13A Gene

    Size:
    290 amino acids
    Molecular mass:
    33003 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=CAI42661.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

    Alternative splice isoforms for ARL13A Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ARL13A Gene

Proteomics data for ARL13A Gene at MOPED

Post-translational modifications for ARL13A Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ARL13A Gene

Antibody Products

No data available for DME Specific Peptides for ARL13A Gene

Domains for ARL13A Gene

Gene Families for ARL13A Gene

HGNC:
  • ARF :ADP-ribosylation factors
  • ARL :ADP-ribosylation factors-like

Protein Domains for ARL13A Gene

Suggested Antigen Peptide Sequences for ARL13A Gene

Graphical View of Domain Structure for InterPro Entry

Q5H913

UniProtKB/Swiss-Prot:

AR13A_HUMAN :
  • Q5H913
Family:
  • Belongs to the small GTPase superfamily. Arf family.
genes like me logo Genes that share domains with ARL13A: view

Function for ARL13A Gene

Gene Ontology (GO) - Molecular Function for ARL13A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005525 GTP binding IEA --
genes like me logo Genes that share ontologies with ARL13A: view

Phenotypes for ARL13A Gene

GenomeRNAi human phenotypes for ARL13A:
genes like me logo Genes that share phenotypes with ARL13A: view

Animal Model Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ARL13A

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for ARL13A Gene

Localization for ARL13A Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ARL13A Gene COMPARTMENTS Subcellular localization image for ARL13A gene
Compartment Confidence
extracellular 2
mitochondrion 2
cytoskeleton 1
cytosol 1
endosome 1
golgi apparatus 1
nucleus 1
peroxisome 1
plasma membrane 1
vacuole 1

Gene Ontology (GO) - Cellular Components for ARL13A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular IEA --
genes like me logo Genes that share ontologies with ARL13A: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for ARL13A Gene

Pathways for ARL13A Gene

SuperPathways for ARL13A Gene

No Data Available

Interacting Proteins for ARL13A Gene

Gene Ontology (GO) - Biological Process for ARL13A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006886 intracellular protein transport --
GO:0007264 small GTPase mediated signal transduction IEA --
genes like me logo Genes that share ontologies with ARL13A: view

No data available for Pathways by source for ARL13A Gene

Transcripts for ARL13A Gene

mRNA/cDNA for ARL13A Gene

(3) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(6) Selected AceView cDNA sequences:
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ARL13A Gene

ADP-ribosylation factor-like 13A:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ARL13A

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ARL13A Gene

ExUns: 1 ^ 2 ^ 3a · 3b ^ 4 ^ 5 ^ 6
SP1:
SP2: - - -
SP3:

Relevant External Links for ARL13A Gene

GeneLoc Exon Structure for
ARL13A
ECgene alternative splicing isoforms for
ARL13A

Expression for ARL13A Gene

mRNA expression in normal human tissues for ARL13A Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for ARL13A Gene

This gene is overexpressed in Testis (31.9).

Protein differential expression in normal tissues for ARL13A Gene

This gene is overexpressed in Liver, secretome (69.0).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for ARL13A Gene

SOURCE GeneReport for Unigene cluster for ARL13A Gene Hs.147237

genes like me logo Genes that share expressions with ARL13A: view

Expression partners for ARL13A Gene

In Situ Assay Products

No data available for mRNA Expression by UniProt/SwissProt for ARL13A Gene

Orthologs for ARL13A Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for ARL13A Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia ARL13A 35
  • 74.66 (n)
  • 65.04 (a)
ARL13A 36
  • 42 (a)
OneToOne
dog
(Canis familiaris)
Mammalia ARL13A 35
  • 82.2 (n)
  • 74.04 (a)
mouse
(Mus musculus)
Mammalia Arl13a 35
  • 75.4 (n)
  • 64.92 (a)
Arl13a 16
Arl13a 36
  • 42 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia ARL13A 35
  • 99.46 (n)
  • 99.6 (a)
ARL13A 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Arl13a 35
  • 77.42 (n)
  • 68.95 (a)
chicken
(Gallus gallus)
Aves ARL13A 36
  • 42 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia ARL13A 36
  • 34 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii arl13a 36
  • 20 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta CG17819 36
  • 25 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea Y54E10BR.2 36
  • 21 (a)
OneToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes ARL3 36
  • 26 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 29 (a)
OneToMany
Species with no ortholog for ARL13A:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for ARL13A Gene

ENSEMBL:
Gene Tree for ARL13A (if available)
TreeFam:
Gene Tree for ARL13A (if available)

Paralogs for ARL13A Gene

Paralogs for ARL13A Gene

Selected SIMAP similar genes for ARL13A Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with ARL13A: view

Variants for ARL13A Gene

Sequence variations from dbSNP and Humsavar for ARL13A Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type MAF
rs2157473 -- 100,980,074(+) ctcac(C/T)taagg intron-variant
rs2187905 -- 100,979,527(+) cttca(C/T)tgacc intron-variant
rs3934462 -- 100,988,470(+) AGAAT(G/T)AGAGC intron-variant, nc-transcript-variant, reference, missense
rs5920876 -- 100,991,526(+) ggcgc(C/T)cacca downstream-variant-500B
rs5920877 -- 100,991,538(+) cacgg(C/T)cagct downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for ARL13A Gene

Variant ID Type Subtype PubMed ID
nsv7012 CNV Insertion 18451855
nsv517937 CNV Gain 19592680
nsv515758 CNV Gain 19592680

Relevant External Links for ARL13A Gene

HapMap Linkage Disequilibrium report
ARL13A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ARL13A Gene

Disorders for ARL13A Gene

No disorders were found for ARL13A Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for ARL13A Gene

Publications for ARL13A Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4
  4. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross M.T. … Bentley D.R. (Nature 2005) 4

Products for ARL13A Gene

Sources for ARL13A Gene

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