Free for academic non-profit institutions. Other users need a Commercial license

Aliases for ARHGEF9-IT1 Gene

Subcategory (RNA class) for ARHGEF9-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for ARHGEF9-IT1 Gene

  • ARHGEF9 Intronic Transcript 1 2 3 5
  • ARHGEF9 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for ARHGEF9-IT1 Gene

Previous GeneCards Identifiers for ARHGEF9-IT1 Gene

  • GC00U933919
  • GC0XM062891

Summaries for ARHGEF9-IT1 Gene

GeneCards Summary for ARHGEF9-IT1 Gene

ARHGEF9-IT1 (ARHGEF9 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ARHGEF9-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ARHGEF9-IT1 Gene

Genomics for ARHGEF9-IT1 Gene

Regulatory Elements for ARHGEF9-IT1 Gene

Enhancers for ARHGEF9-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH0XH063656 0.6 Ensembl ENCODE 0.4 +13.6 13643 3.2 JUND ARHGEF9-IT1 LINC01278
GH0XH063751 0.9 ENCODE 0.2 -82.6 -82595 4.2 PKNOX1 ATF1 ZNF76 BATF RAD21 YY1 GLIS2 ZNF366 ZNF350 FOS MIR1468 ARHGEF9 BTF3P8 ARHGEF9-IT1
GH0XH063761 0.7 ENCODE 0.2 -90.3 -90344 0.8 CTCF TBL1XR1 ZBED1 TRIM22 RAD21 BCL11A EED IKZF1 ETV6 RUNX3 MIR1468 ARHGEF9 BTF3P8 ARHGEF9-IT1
GH0XH063745 0.6 Ensembl ENCODE 0.2 -75.3 -75342 2.7 RUNX3 MIR1468 ARHGEF9 BTF3P8 ARHGEF9-IT1
GH0XH063560 0.9 ENCODE 0.1 +110.3 110286 1.8 HDAC1 TBP PKNOX1 ARID4B SIN3A ZNF2 ZBTB40 RAD21 RFX5 YY1 LINC01278 ARHGEF9-IT1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ARHGEF9-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ARHGEF9-IT1 Gene

Genomic Locations for ARHGEF9-IT1 Gene
1,307 bases
Minus strand

Genomic View for ARHGEF9-IT1 Gene

Genes around ARHGEF9-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ARHGEF9-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ARHGEF9-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ARHGEF9-IT1 Gene

Proteins for ARHGEF9-IT1 Gene

Post-translational modifications for ARHGEF9-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ARHGEF9-IT1 Gene

Domains & Families for ARHGEF9-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ARHGEF9-IT1 Gene

Function for ARHGEF9-IT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ARHGEF9-IT1 Gene

Localization for ARHGEF9-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ARHGEF9-IT1 Gene

Pathways & Interactions for ARHGEF9-IT1 Gene

SuperPathways for ARHGEF9-IT1 Gene

No Data Available

Interacting Proteins for ARHGEF9-IT1 Gene

Gene Ontology (GO) - Biological Process for ARHGEF9-IT1 Gene


No data available for Pathways by source and SIGNOR curated interactions for ARHGEF9-IT1 Gene

Drugs & Compounds for ARHGEF9-IT1 Gene

No Compound Related Data Available

Transcripts for ARHGEF9-IT1 Gene

mRNA/cDNA for ARHGEF9-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ARHGEF9-IT1 Gene

No ASD Table

Relevant External Links for ARHGEF9-IT1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for ARHGEF9-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ARHGEF9-IT1 Gene

genes like me logo Genes that share expression patterns with ARHGEF9-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ARHGEF9-IT1 Gene

Orthologs for ARHGEF9-IT1 Gene

Evolution for ARHGEF9-IT1 Gene

Gene Tree for ARHGEF9-IT1 (if available)
Gene Tree for ARHGEF9-IT1 (if available)

No data available for Orthologs for ARHGEF9-IT1 Gene

Paralogs for ARHGEF9-IT1 Gene

No data available for Paralogs for ARHGEF9-IT1 Gene

Variants for ARHGEF9-IT1 Gene

Sequence variations from dbSNP and Humsavar for ARHGEF9-IT1 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type
rs112101570 -- 63,673,109(+) AGGAA(A/G)GTGAC intron-variant, upstream-variant-2KB
rs113034146 -- 63,670,677(+) ATTTC(C/G)CAGAA intron-variant
rs141705117 -- 63,671,545(+) ATGTG(A/G)TACCT intron-variant, upstream-variant-2KB
rs146172891 -- 63,672,717(+) GCTGG(A/G)CACCT intron-variant, upstream-variant-2KB
rs147412766 -- 63,670,193(+) GAATG(A/C)CATAC intron-variant, downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for ARHGEF9-IT1 Gene

Variant ID Type Subtype PubMed ID
esv1584074 OTHER inversion 17803354

Relevant External Links for ARHGEF9-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ARHGEF9-IT1 Gene

Disorders for ARHGEF9-IT1 Gene

Relevant External Links for ARHGEF9-IT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for ARHGEF9-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ARHGEF9-IT1 Gene

Publications for ARHGEF9-IT1 Gene

No publications were found for ARHGEF9-IT1 Gene.

Products for ARHGEF9-IT1 Gene

Sources for ARHGEF9-IT1 Gene

Loading form....