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Aliases for ARHGEF38-IT1 Gene

Subcategory (RNA class) for ARHGEF38-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ARHGEF38-IT1 Gene

  • ARHGEF38 Intronic Transcript 1 2 3 5
  • ARHGEF38 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for ARHGEF38-IT1 Gene

Previous GeneCards Identifiers for ARHGEF38-IT1 Gene

  • GC00U933818
  • GC04P106483

Summaries for ARHGEF38-IT1 Gene

GeneCards Summary for ARHGEF38-IT1 Gene

ARHGEF38-IT1 (ARHGEF38 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ARHGEF38-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ARHGEF38-IT1 Gene

Genomics for ARHGEF38-IT1 Gene

Regulatory Elements for ARHGEF38-IT1 Gene

Enhancers for ARHGEF38-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04H105209 0.6 dbSUPER 4.4 -350.7 -350701 3 ZBED1 DPF2 FOXA1 ZNF217 GATA3 CTBP1 POLR2A MAFK TCF7L2 TET2-AS1 ARHGEF38-IT1 TET2 RN7SL89P
GH04H105225 0.4 dbSUPER 4.5 -335.6 -335556 2 ZNF398 TET2-AS1 ARHGEF38-IT1 RN7SL89P TET2
GH04H105220 0.4 dbSUPER 4.4 -340.9 -340940 1 GATA3 CUX1 TET2-AS1 ARHGEF38-IT1 RN7SL89P TET2
GH04H105169 0.2 dbSUPER 4.4 -391.1 -391083 1 ARHGEF38-IT1 TET2 RN7SL89P
GH04H105198 0.2 dbSUPER 4.3 -362.6 -362558 1 TET2-AS1 PPA2 ARHGEF38-IT1 TET2 RN7SL89P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ARHGEF38-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for ARHGEF38-IT1 Gene

Chromosome:
4
Start:
105,561,591 bp from pter
End:
105,570,238 bp from pter
Size:
8,648 bases
Orientation:
Plus strand

Genomic View for ARHGEF38-IT1 Gene

Genes around ARHGEF38-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ARHGEF38-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ARHGEF38-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ARHGEF38-IT1 Gene

Proteins for ARHGEF38-IT1 Gene

Post-translational modifications for ARHGEF38-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ARHGEF38-IT1 Gene

Domains & Families for ARHGEF38-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ARHGEF38-IT1 Gene

Function for ARHGEF38-IT1 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for ARHGEF38-IT1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ARHGEF38-IT1 Gene

Localization for ARHGEF38-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ARHGEF38-IT1 Gene

Pathways & Interactions for ARHGEF38-IT1 Gene

SuperPathways for ARHGEF38-IT1 Gene

No Data Available

Interacting Proteins for ARHGEF38-IT1 Gene

Gene Ontology (GO) - Biological Process for ARHGEF38-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ARHGEF38-IT1 Gene

Drugs & Compounds for ARHGEF38-IT1 Gene

No Compound Related Data Available

Transcripts for ARHGEF38-IT1 Gene

mRNA/cDNA for ARHGEF38-IT1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ARHGEF38-IT1 Gene

ARHGEF38 intronic transcript 1 (non-protein coding):
Representative Sequences:

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for ARHGEF38-IT1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for ARHGEF38-IT1 Gene

No ASD Table

Relevant External Links for ARHGEF38-IT1 Gene

GeneLoc Exon Structure for
ARHGEF38-IT1
ECgene alternative splicing isoforms for
ARHGEF38-IT1

Expression for ARHGEF38-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ARHGEF38-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for ARHGEF38-IT1 Gene

This gene is overexpressed in Prostate (x14.6), Breast - Mammary Tissue (x9.5), Testis (x5.0), and Minor Salivary Gland (x4.8).

SOURCE GeneReport for Unigene cluster for ARHGEF38-IT1 Gene:

Hs.668908
genes like me logo Genes that share expression patterns with ARHGEF38-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ARHGEF38-IT1 Gene

Orthologs for ARHGEF38-IT1 Gene

Evolution for ARHGEF38-IT1 Gene

ENSEMBL:
Gene Tree for ARHGEF38-IT1 (if available)
TreeFam:
Gene Tree for ARHGEF38-IT1 (if available)

No data available for Orthologs for ARHGEF38-IT1 Gene

Paralogs for ARHGEF38-IT1 Gene

No data available for Paralogs for ARHGEF38-IT1 Gene

Variants for ARHGEF38-IT1 Gene

Sequence variations from dbSNP and Humsavar for ARHGEF38-IT1 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs1000379528 -- 105,567,734(+) AATAT(-/C)CAATA intron-variant
rs1000474216 -- 105,568,715(+) CTGTG(A/G)AAGTT intron-variant
rs1000983005 -- 105,562,708(+) TGAGA(A/C)AGGTT intron-variant
rs10010936 -- 105,561,877(+) agata(C/T)gacaa intron-variant
rs1001101129 -- 105,562,392(+) ATCCA(C/G)TGAAT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ARHGEF38-IT1 Gene

Variant ID Type Subtype PubMed ID
dgv5354n100 CNV loss 25217958
esv2728101 CNV deletion 23290073
esv2728103 CNV deletion 23290073
nsv1000196 CNV loss 25217958
nsv461610 CNV loss 19166990
nsv517837 CNV loss 19592680
nsv518958 CNV gain 19592680
nsv524424 CNV loss 19592680
nsv595008 CNV loss 21841781

Relevant External Links for ARHGEF38-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ARHGEF38-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ARHGEF38-IT1 Gene

Disorders for ARHGEF38-IT1 Gene

Relevant External Links for ARHGEF38-IT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ARHGEF38-IT1

No disorders were found for ARHGEF38-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ARHGEF38-IT1 Gene

Publications for ARHGEF38-IT1 Gene

No publications were found for ARHGEF38-IT1 Gene.

Products for ARHGEF38-IT1 Gene

Sources for ARHGEF38-IT1 Gene

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