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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

ARHGEF37 Gene

protein-coding   GIFtS: 38
GCID: GC05P148961

Rho Guanine Nucleotide Exchange Factor (GEF) 37

  Search for ARHGEF37
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
Rho Guanine Nucleotide Exchange Factor (GEF) 371 2
Rho Guanine Nucleotide Exchange Factor 372

External Ids:    HGNC: 344301   Entrez Gene: 3893372   Ensembl: ENSG000001831117   UniProtKB: A1IGU53   

Export aliases for ARHGEF37 gene to outside databases

Previous GC identifer: GC05P144107


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for ARHGEF37 Gene: 
ARHGEF37 (Rho guanine nucleotide exchange factor (GEF) 37) is a protein-coding gene. GO annotations related to this gene include Rho guanyl-nucleotide exchange factor activity and protein domain specific binding. An important paralog of this gene is ARHGEF38.

UniProtKB/Swiss-Prot: ARH37_HUMAN, A1IGU5
Function: May act as a guanine nucleotide exchange factor (GEF) (By similarity)




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000005.9  NT_029289.11  NC_018916.2  
Regulatory elements:
   Search SABiosciences Regulatory transcription factor binding sites for ARHGEF37
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search SABiosciences Chromatin IP Primers for ARHGEF37

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ARHGEF37


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 5q32   Ensembl cytogenetic band:  5q32   HGNC cytogenetic band: 5q33.1

ARHGEF37 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ARHGEF37 gene location

GeneLoc information about chromosome 5         GeneLoc Exon Structure

GeneLoc location for GC05P148961:  view genomic region     (about GC identifiers)

Start:
148,931,510 bp from pter      End:
149,014,531 bp from pter
Size:
83,022 bases      Orientation:
plus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: ARH37_HUMAN, A1IGU5 (See protein sequence)
Recommended Name: Rho guanine nucleotide exchange factor 37  
Size: 675 amino acids; 76278 Da
Sequence caution: Sequence=BAC85655.1; Type=Erroneous initiation; Note=Translation N-terminally extended;
Secondary accessions: Q6ZW51

Explore the universe of human proteins at neXtProt for ARHGEF37: NX_A1IGU5

Explore proteomics data for ARHGEF37 at MOPED 

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_A1IGU5

  • ARHGEF37 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    ARHGEF37 Protein Expression
    REFSEQ proteins: NP_001001669.2  
    ENSEMBL proteins: 
     ENSP00000425621   ENSP00000328083  

    Human Recombinant Protein Products for ARHGEF37: 
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    Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005622intracellular ----
    GO:0005737cytoplasm IEA--

    ARHGEF37 for ontologies           About GeneDecksing



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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    HGNC Gene Families: 
    ARHGEF: Rho guanine nucleotide exchange factors

    5 InterPro protein domains:
     IPR011511 SH3_2
     IPR027267 AH/BAR-dom
     IPR000219 DH-domain
     IPR001452 SH3_domain
     IPR004148 BAR_dom

    Graphical View of Domain Structure for InterPro Entry A1IGU5

    ProtoNet protein and cluster: A1IGU5

    UniProtKB/Swiss-Prot: ARH37_HUMAN, A1IGU5
    Similarity: Contains 1 BAR domain
    Similarity: Contains 1 DH (DBL-homology) domain
    Similarity: Contains 2 SH3 domains


    ARHGEF37 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

    Molecular Function:

         UniProtKB/Swiss-Prot Summary: ARH37_HUMAN, A1IGU5
    Function: May act as a guanine nucleotide exchange factor (GEF) (By similarity)

         Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005089Rho guanyl-nucleotide exchange factor activity IEA--
    GO:0005515protein binding ----
         
    ARHGEF37 for ontologies           About GeneDecksing


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    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for ARHGEF37

    Gene Ontology (GO): 1 biological process term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0035023regulation of Rho protein signal transduction IEA--

    ARHGEF37 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
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    Browse Tocris compounds for ARHGEF37 (ARH37)

    3 HMDB Compounds for ARHGEF37    About this table
    CompoundSynonyms CAS #PubMed Ids
    Guanosine diphosphate5'-GDP (see all 10)146-91-8--
    Guanosine monophosphate5'-GMP (see all 14)85-32-5--
    Guanosine triphosphate5'-GTP (see all 10)86-01-1--

    Search CenterWatch for drugs/clinical trials and news about ARHGEF37 / ARH37

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for ARHGEF37 gene: 
    NM_001001669.2  

    Unigene Cluster for ARHGEF37:

    Rho guanine nucleotide exchange factor (GEF) 37
    Hs.256206  [show with all ESTs]
    Unigene Representative Sequence: NM_001001669
    3 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000505810 ENST00000333677(uc003lra.1) ENST00000509831
    miRNA
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    hsa-miR-323-3p hsa-miR-3164 hsa-miR-3938 hsa-miR-361-5p hsa-miR-330-5p hsa-miR-24-1* hsa-miR-218-1* hsa-miR-128
    Browse SwitchGear 3'UTR luciferase reporter plasmids
    Inhib. RNA
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      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat ARHGEF37

    Additional mRNA sequence: 

    AB199796.1 AK023814.1 AK123597.1 AK300355.1 AK300559.1 AK316002.1 BC041325.1 

    6 DOTS entries:

    DT.97787807  DT.70104998  DT.75101969  DT.120883257  DT.75143607  DT.95235770 

    24/87 AceView cDNA sequences (see all 87):

    BG681939 AI583172 BE646223 BC041325 BU734809 AA612626 BF939317 AI678940 
    AW151821 BQ189207 BE326883 AK023814 AI674408 BU732976 AI568798 CB850773 
    AI202380 CD722857 AI028068 CD517154 AI825947 CD675464 BM707892 BM705521 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    ARHGEF37 expression in normal human tissues (normalized intensities)      ARHGEF37 embryonic expression: see
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: GCACTGTGTC
    ARHGEF37 Expression
    About this image


    ARHGEF37 expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database 
     5/1 selected tissues (see all 1) fully expand
     
     Bone (Muscoskeletal System)
             Zeugopod Growth Plate

    See ARHGEF37 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for ARHGEF37

    SOURCE GeneReport for Unigene cluster: Hs.256206
        SABiosciences Custom PCR Arrays for ARHGEF37
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    In Situ
    Assay Products:
     

     
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of animals.

    Orthologs for ARHGEF37 gene from 5/11 species (see all 11)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Arhgef371 , 5 Rho guanine nucleotide exchange factor (GEF) 371, 5 81.19(n)1
    79.56(a)1
      18 (34.62 cM)5
    3289671  NM_177828.41  NP_808496.21 
     614937945 
    chicken
    (Gallus gallus)
    Aves ARHGEF371 Rho guanine nucleotide exchange factor (GEF) 37 64.95(n)
    57.59(a)
      416149  XM_414480.3  XP_414480.3 
    lizard
    (Anolis carolinensis)
    Reptilia ARHGEF376
    Rho guanine nucleotide exchange factor (GEF) 37
    50(a)
    1 ↔ 1
    2(122434674-122500942)
    zebrafish
    (Danio rerio)
    Actinopterygii CU074314.16
    Uncharacterized protein
    36(a)
    1 ↔ 1
    14(25848223-25872579)
    worm
    (Caenorhabditis elegans)
    Secernentea Y37A1B.176
    Protein Y37A1B.17, isoform a
    8(a)
    1 → many
    IV(13964361-13979847)


    ENSEMBL Gene Tree for ARHGEF37 (if available)
    TreeFam Gene Tree for ARHGEF37 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for ARHGEF37 gene
    ARHGEF382  DNMBP2  
    2 SIMAP similar genes for ARHGEF37 using alignment to 2 protein entries:     ARH37_HUMAN (see all proteins):
    ARHGEF38    ARHGEF16

    ARHGEF37 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/1288 SNPs in ARHGEF37 are shown (see all 1288)    About this table     
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 5 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1478200261,2
    C--148959137(+) TGATG-/TTATTA
            
    TTATT
    1 -- us2k10--------
    rs1508063481,2
    C--148959333(+) AGAGAC/TGGGGT 1 -- us2k10--------
    rs1826330321,2
    --148959364(+) GGCCTC/TGAACT 1 -- us2k10--------
    rs1877574521,2
    --148959516(+) AATGCA/CTCTCC 1 -- us2k10--------
    rs1930996981,2
    --148959684(+) AGTGGC/TGTGAT 1 -- us2k10--------
    rs1855190931,2
    --148959693(+) ATCTCA/GGCTCA 1 -- us2k10--------
    rs751856801,2
    C--148959781(+) ACCACA/GCCCAG 1 -- us2k10--------
    rs1878484761,2
    --148959843(+) GGTCTC/TGATCT 1 -- us2k10--------
    rs1390355641,2
    C--148959866(+) ATCTG-/CCCCCC 1 -- us2k10--------
    rs1441346211,2
    --148959916(+) ACCGCA/GCCCGG 1 -- us2k10--------

    HapMap Linkage Disequilibrium report for ARHGEF37 (148931510 - 149014531 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 4 variations for ARHGEF37:    About this table     
    Variant IDTypeSubtypePubMed ID
    esv2671746CNV Deletion23128226
    esv28001CNV Loss19812545
    nsv516760CNV Loss19592680
    esv24490CNV Gain19812545

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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for ARHGEF37 gene integrated from 9 sources:
    (articles sorted by number of sources associating them with ARHGEF37)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    2. Common genetic variation and antidepressant efficacy i n major depressive disorder: a meta-analysis of three genome-wide pharmacogeneti c studies. (PubMed id 23377640)1 (2013)
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
    4. Hepatitis C virus core protein interacts with 14-3-3 protein and activates the kinase Raf-1. (PubMed id )2 Aoki H.... Hino O. (2000)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 389337 HGNC: 34430 AceView: FLJ41603 Ensembl:ENSG00000183111 euGenes: HUgn389337
    ECgene: ARHGEF37 H-InvDB: ARHGEF37

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for ARHGEF37 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for ARHGEF37 gene:
    Search GeneIP for patents involving ARHGEF37

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
    About This Section

     
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    GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 4 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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    (GIFtS: 73)
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