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ARHGEF37 Gene

protein-coding   GIFtS: 42
GCID: GC05P148961

Rho Guanine Nucleotide Exchange Factor (GEF) 37

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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Rho Guanine Nucleotide Exchange Factor (GEF) 371 2
Rho Guanine Nucleotide Exchange Factor 372

External Ids:    HGNC: 344301   Entrez Gene: 3893372   Ensembl: ENSG000001831117   UniProtKB: A1IGU53   

Export aliases for ARHGEF37 gene to outside databases

Previous GC identifer: GC05P144107


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for ARHGEF37 Gene:
ARHGEF37 (Rho guanine nucleotide exchange factor (GEF) 37) is a protein-coding gene. GO annotations related to this gene include Rho guanyl-nucleotide exchange factor activity. An important paralog of this gene is ARHGEF38.

UniProtKB/Swiss-Prot: ARH37_HUMAN, A1IGU5
Function: May act as a guanine nucleotide exchange factor (GEF) (By similarity)




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000005.9  NT_029289.12  NC_018916.2  
Regulatory elements:
   Search for regulatory transcription factor binding sites for ARHGEF37
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search Chromatin IP Primers for ARHGEF37

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat ARHGEF37


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 5q32   Ensembl cytogenetic band:  5q32   HGNC cytogenetic band: 5q33.1

ARHGEF37 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ARHGEF37 gene location

GeneLoc information about chromosome 5         GeneLoc Exon Structure

GeneLoc location for GC05P148961:  view genomic region     (about GC identifiers)

Start:
148,931,510 bp from pter      End:
149,014,531 bp from pter
Size:
83,022 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: ARH37_HUMAN, A1IGU5 (See protein sequence)
Recommended Name: Rho guanine nucleotide exchange factor 37  
Size: 675 amino acids; 76278 Da
Sequence caution: Sequence=BAC85655.1; Type=Erroneous initiation; Note=Translation N-terminally extended;
Secondary accessions: Q6ZW51

Explore the universe of human proteins at neXtProt for ARHGEF37: NX_A1IGU5

Explore proteomics data for ARHGEF37 at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See ARHGEF37 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_001001669.2  
    ENSEMBL proteins: 
     ENSP00000425621   ENSP00000328083  

    ARHGEF37 Human Recombinant Protein Products:

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    Cloud-Clone Corp. Proteins for ARHGEF37

     
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    antibodies-online proteins for ARHGEF37 (3 products) 

     
    Search antibodies-online for peptides for ARHGEF37

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    antibodies-online antibodies for ARHGEF37 

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    antibodies-online kits for ARHGEF37 (3 products) 


    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    ARHGEF: Rho guanine nucleotide exchange factors

    5 InterPro protein domains:
     IPR027267 AH/BAR-dom
     IPR000219 DH-domain
     IPR001452 SH3_domain
     IPR011511 SH3_2
     IPR004148 BAR_dom

    Graphical View of Domain Structure for InterPro Entry A1IGU5

    ProtoNet protein and cluster: A1IGU5

    UniProtKB/Swiss-Prot: ARH37_HUMAN, A1IGU5
    Similarity: Contains 1 BAR domain
    Similarity: Contains 1 DH (DBL-homology) domain
    Similarity: Contains 2 SH3 domains


    Find genes that share domains with ARHGEF37           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:

         UniProtKB/Swiss-Prot Summary: ARH37_HUMAN, A1IGU5
    Function: May act as a guanine nucleotide exchange factor (GEF) (By similarity)

         Gene Ontology (GO): 2 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005089Rho guanyl-nucleotide exchange factor activity IEA--
    GO:0005515protein binding ----
         
    Find genes that share ontologies with ARHGEF37           About GenesLikeMe


    Animal Models:
       genOway: Develop your customized and physiologically relevant rodent model for ARHGEF37

    miRNA
    Products:
        
    miRTarBase miRNAs that target ARHGEF37:
    hsa-mir-335-5p (MIRT017866)

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    Selected qRT-PCR Assays for microRNAs that regulate ARHGEF37 (see all 36):
    hsa-miR-323-3p hsa-miR-3164 hsa-miR-3938 hsa-miR-361-5p hsa-miR-330-5p hsa-miR-24-1* hsa-miR-218-1* hsa-miR-128
    Browse SwitchGear 3'UTR luciferase reporter plasmids
    Inhib. RNA
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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    cytosol3
    nucleus2

    Gene Ontology (GO): 1 cellular component term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005737cytoplasm IEA--

    Find genes that share ontologies with ARHGEF37           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for ARHGEF37
    Interactions:

        Search GeneGlobe Interaction Network for ARHGEF37

    STRING Interaction Network Preview (showing 5 interactants - click image to see 24)

    Selected Interacting proteins for ARHGEF37 (ENSP000003280834) via UniProtKB, MINT, STRING, and/or I2D (see all 24)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    EIF3DENSP000002161904STRING: ENSP00000216190
    NCF1ENSP000002894734STRING: ENSP00000289473
    NOXO1ENSP000003804504STRING: ENSP00000380450
    SH3PXD2AENSP000003482154STRING: ENSP00000348215
    SH3PXD2BENSP000003097144STRING: ENSP00000309714
    About this table

    Gene Ontology (GO): 1 biological process term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0035023regulation of Rho protein signal transduction ----

    Find genes that share ontologies with ARHGEF37           About GenesLikeMe



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for ARHGEF37 (ARH37)

    3 HMDB Compounds for ARHGEF37    About this table
    CompoundSynonyms CAS #PubMed Ids
    Guanosine diphosphate5'-GDP (see all 10)146-91-8--
    Guanosine monophosphate5'-GMP (see all 14)85-32-5--
    Guanosine triphosphate5'-GTP (see all 10)86-01-1--



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for ARHGEF37 gene: 
    NM_001001669.2  

    Unigene Cluster for ARHGEF37:

    Rho guanine nucleotide exchange factor (GEF) 37
    Hs.256206  [show with all ESTs]
    Unigene Representative Sequence: NM_001001669
    3 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000505810 ENST00000333677(uc003lra.1) ENST00000509831
    miRNA
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    Selected qRT-PCR Assays for microRNAs that regulate ARHGEF37 (see all 36):
    hsa-miR-323-3p hsa-miR-3164 hsa-miR-3938 hsa-miR-361-5p hsa-miR-330-5p hsa-miR-24-1* hsa-miR-218-1* hsa-miR-128
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      QuantiTect SYBR Green Assays in human, mouse, rat ARHGEF37
      QuantiFast Probe-based Assays in human, mouse, rat ARHGEF37

    Additional mRNA sequence: 

    AB199796.1 AK023814.1 AK123597.1 AK300355.1 AK300559.1 AK316002.1 BC041325.1 

    6 DOTS entries:

    DT.97787807  DT.70104998  DT.75101969  DT.120883257  DT.75143607  DT.95235770 

    Selected AceView cDNA sequences (see all 87):

    AI678940 AI568798 BU732976 BF939317 AA612626 BU734809 BC041325 BQ189207 
    BG681939 BE326883 AI674408 CD722857 AW151821 CB850773 BE646223 AI583172 
    AK023814 AI202380 NM_001001669 AW296191 BQ638642 BM696804 CA398193 AK123597 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    ARHGEF37 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: GCACTGTGTC
    ARHGEF37 Expression
    About this image


    ARHGEF37 expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database
     
     Bone (Muscoskeletal System)
             Zeugopod Growth Plate
    ARHGEF37 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    ARHGEF37 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.256206
        Custom PCR Arrays for ARHGEF37
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    In Situ
    Assay Products:
     

     
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of animals.

    Orthologs for ARHGEF37 gene from Selected species (see all 13)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Arhgef371 , 5 Rho guanine nucleotide exchange factor (GEF) 371, 5 81.19(n)1
    79.56(a)1
      18 (34.62 cM)5
    3289671  NM_177828.41  NP_808496.21 
     614937945 
    chicken
    (Gallus gallus)
    Aves ARHGEF371 Rho guanine nucleotide exchange factor (GEF) 37 64.08(n)
    56.72(a)
      416149  XM_414480.4  XP_414480.4 
    lizard
    (Anolis carolinensis)
    Reptilia ARHGEF376
    Rho guanine nucleotide exchange factor (GEF) 37
    50(a)
    1 ↔ 1
    2(122434674-122500942)
    tropical clawed frog
    (Xenopus tropicalis)
    Amphibia arhgef371 Rho guanine nucleotide exchange factor (GEF) 37 53.59(n)
    43.04(a)
      100490262  XM_002936706.2  XP_002936752.2 
    zebrafish
    (Danio rerio)
    Actinopterygii LOC1018836551 rho guanine nucleotide exchange factor 37-like 51.61(n)
    40.73(a)
      101883655  XM_005173158.1  XP_005173215.1 
    worm
    (Caenorhabditis elegans)
    Secernentea Y37A1B.176
    Protein Y37A1B.17, isoform b (Y37A1B.17) mRNA, com...
    9(a)
    1 → many
    IV(13964361-13979847) WBGene00044989


    ENSEMBL Gene Tree for ARHGEF37 (if available)
    TreeFam Gene Tree for ARHGEF37 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for ARHGEF37 gene
    ARHGEF382  DNMBP2  
    2 SIMAP similar genes for ARHGEF37 using alignment to 2 protein entries:     ARH37_HUMAN (see all proteins):
    ARHGEF38    ARHGEF16

    Find genes that share paralogs with ARHGEF37           About GenesLikeMe



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for ARHGEF37 (see all 1288)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 5 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1478200261,2
    C--148959137(+) TGATG-/TTATTA
            
    TTATT
    1 -- us2k10--------
    rs1508063481,2
    C--148959333(+) AGAGAC/TGGGGT 1 -- us2k10--------
    rs1826330321,2
    --148959364(+) GGCCTC/TGAACT 1 -- us2k10--------
    rs1877574521,2
    --148959516(+) AATGCA/CTCTCC 1 -- us2k10--------
    rs1930996981,2
    --148959684(+) AGTGGC/TGTGAT 1 -- us2k10--------
    rs1855190931,2
    --148959693(+) ATCTCA/GGCTCA 1 -- us2k10--------
    rs751856801,2
    C--148959781(+) ACCACA/GCCCAG 1 -- us2k10--------
    rs1878484761,2
    --148959843(+) GGTCTC/TGATCT 1 -- us2k10--------
    rs1390355641,2
    C--148959866(+) ATCTG-/CCCCCC 1 -- us2k10--------
    rs1441346211,2
    --148959916(+) ACCGCA/GCCCGG 1 -- us2k10--------

    HapMap Linkage Disequilibrium report for ARHGEF37 (148931510 - 149014531 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 4 variations for ARHGEF37:    About this table    
    Variant IDTypeSubtypePubMed ID
    esv2671746CNV Deletion23128226
    esv28001CNV Loss19812545
    nsv516760CNV Loss19592680
    esv24490CNV Gain19812545

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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for ARHGEF37 gene integrated from 10 sources:
    (articles sorted by number of sources associating them with ARHGEF37)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (Nat. Genet. 2004)
    2. Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies. (PubMed id 23377640)1 (Am J Psychiatry 2013)
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
    4. (PubMed id )2 

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 389337 HGNC: 34430 AceView: FLJ41603 Ensembl:ENSG00000183111 euGenes: HUgn389337
    ECgene: ARHGEF37 H-InvDB: ARHGEF37

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for ARHGEF37 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for ARHGEF37 gene:
    Search GeneIP for patents involving ARHGEF37

    GeneCards and IP:
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