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Aliases for ARHGEF3-AS1 Gene

Subcategory (RNA class) for ARHGEF3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ARHGEF3-AS1 Gene

  • ARHGEF3 Antisense RNA 1 2 3 5
  • ARHGEF3 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for ARHGEF3-AS1 Gene

Previous GeneCards Identifiers for ARHGEF3-AS1 Gene

  • GC00U933751

Summaries for ARHGEF3-AS1 Gene

GeneCards Summary for ARHGEF3-AS1 Gene

ARHGEF3-AS1 (ARHGEF3 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ARHGEF3-AS1 Gene

Genomics for ARHGEF3-AS1 Gene

Regulatory Elements for ARHGEF3-AS1 Gene

Enhancers for ARHGEF3-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F056921 1.6 FANTOM5 Ensembl ENCODE 0.4 -13.7 -13688 10.1 PKNOX1 MLX ARID4B ZNF48 SLC30A9 ZNF143 SP5 JUNB MXD4 TBX21 FAM208A ARHGEF3 CCDC66 ARHGEF3-AS1 GC03M056906
GH03F056915 0.9 ENCODE 0.3 -22.9 -22895 4.2 HDGF PKNOX1 TBL1XR1 WRNIP1 BMI1 RAD21 EGR1 ELK1 ZNF207 ETV6 ARHGEF3 GC03M056906 ARHGEF3-AS1
GH03F056976 0.9 Ensembl ENCODE 0.3 +37.2 37154 1.9 RFX1 ZNF140 ZBTB8A REST FEZF1 ZNF121 SCRT2 ZNF341 PRDM10 ZNF600 FAM208A DENND6A ARHGEF3-AS1 SPATA12
GH03F057016 1.3 FANTOM5 Ensembl ENCODE 0.2 +77.4 77361 1.6 LEF1 TFAP4 ESRRA TAL1 TEAD4 EBF1 NCOR1 EED ETV6 NR2F6 APPL1 PDE12 SPATA12 ARHGEF3 ARHGEF3-AS1
GH03F056980 1.2 Ensembl ENCODE 0.2 +41.2 41193 2.1 INSM2 KLF17 SIN3A FEZF1 ZNF2 ZBTB40 RAD21 CHAMP1 ZNF335 ZNF366 SPATA12 ARHGEF3 DENND6A ARHGEF3-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ARHGEF3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for ARHGEF3-AS1 Gene

Chromosome:
3
Start:
56,940,040 bp from pter
End:
56,960,854 bp from pter
Size:
20,815 bases
Orientation:
Plus strand

Genomic View for ARHGEF3-AS1 Gene

Genes around ARHGEF3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ARHGEF3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ARHGEF3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ARHGEF3-AS1 Gene

Proteins for ARHGEF3-AS1 Gene

Post-translational modifications for ARHGEF3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ARHGEF3-AS1 Gene

Domains & Families for ARHGEF3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ARHGEF3-AS1 Gene

Function for ARHGEF3-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ARHGEF3-AS1 Gene

Localization for ARHGEF3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ARHGEF3-AS1 Gene

Pathways & Interactions for ARHGEF3-AS1 Gene

SuperPathways for ARHGEF3-AS1 Gene

No Data Available

Interacting Proteins for ARHGEF3-AS1 Gene

Gene Ontology (GO) - Biological Process for ARHGEF3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ARHGEF3-AS1 Gene

Transcripts for ARHGEF3-AS1 Gene

mRNA/cDNA for ARHGEF3-AS1 Gene

(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ARHGEF3-AS1 Gene

ARHGEF3 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ARHGEF3-AS1 Gene

No ASD Table

Relevant External Links for ARHGEF3-AS1 Gene

GeneLoc Exon Structure for
ARHGEF3-AS1
ECgene alternative splicing isoforms for
ARHGEF3-AS1

Expression for ARHGEF3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ARHGEF3-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for ARHGEF3-AS1 Gene

This gene is overexpressed in Testis (x48.1) and Kidney - Cortex (x4.9).

SOURCE GeneReport for Unigene cluster for ARHGEF3-AS1 Gene:

Hs.549631
genes like me logo Genes that share expression patterns with ARHGEF3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for ARHGEF3-AS1 Gene

Orthologs for ARHGEF3-AS1 Gene

Evolution for ARHGEF3-AS1 Gene

ENSEMBL:
Gene Tree for ARHGEF3-AS1 (if available)
TreeFam:
Gene Tree for ARHGEF3-AS1 (if available)

No data available for Orthologs for ARHGEF3-AS1 Gene

Paralogs for ARHGEF3-AS1 Gene

No data available for Paralogs for ARHGEF3-AS1 Gene

Variants for ARHGEF3-AS1 Gene

Sequence variations from dbSNP and Humsavar for ARHGEF3-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs10446483 -- 56,958,718(+) ATGGA(A/G)ACTTT intron-variant
rs10446484 -- 56,958,896(+) TAGAA(A/G)AGAAA intron-variant
rs111229515 -- 56,958,473(+) CAGGC(-/T)CACAT intron-variant
rs111278158 -- 56,943,529(+) GAGAT(A/T)AATGC intron-variant
rs11130558 -- 56,956,476(+) AAGTA(C/T)GTATC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ARHGEF3-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv590363 CNV loss 21841781
esv3596221 CNV loss 21293372

Relevant External Links for ARHGEF3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ARHGEF3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ARHGEF3-AS1 Gene

Disorders for ARHGEF3-AS1 Gene

Relevant External Links for ARHGEF3-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ARHGEF3-AS1

No disorders were found for ARHGEF3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ARHGEF3-AS1 Gene

Publications for ARHGEF3-AS1 Gene

No publications were found for ARHGEF3-AS1 Gene.

Products for ARHGEF3-AS1 Gene

Sources for ARHGEF3-AS1 Gene

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