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Aliases for ARHGEF26-AS1 Gene

Subcategory (RNA class) for ARHGEF26-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ARHGEF26-AS1 Gene

  • ARHGEF26 Antisense RNA 1 2 3 5
  • ARHGEF26 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for ARHGEF26-AS1 Gene

Previous GeneCards Identifiers for ARHGEF26-AS1 Gene

  • GC03M153744

Summaries for ARHGEF26-AS1 Gene

GeneCards Summary for ARHGEF26-AS1 Gene

ARHGEF26-AS1 (ARHGEF26 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ARHGEF26-AS1 Gene

Genomics for ARHGEF26-AS1 Gene

Regulatory Elements for ARHGEF26-AS1 Gene

Enhancers for ARHGEF26-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F154059 1.3 Ensembl ENCODE 36.2 +60.9 60872 2.0 ESRRA PKNOX1 HLF DPF2 RAD21 ZNF217 E2F1 GATA3 CTBP1 JUND ARHGEF26-AS1 ARHGEF26 GC03P154024
GH03F154089 0.5 ENCODE 26 +31.6 31583 0.9 ESRRA PKNOX1 ZHX2 DPF2 ZBTB40 RAD21 ZNF217 CTBP1 JUND GATA3 ARHGEF26-AS1 ARHGEF26 GC03P154024
GH03F154223 0.9 Ensembl ENCODE 21.9 -103.3 -103348 1.4 ESRRA NR2F1 MNT DPF2 CEBPG RAD21 ZNF217 GATA3 CTBP1 SMARCA4 ARHGEF26-AS1 ARHGEF26 LOC105374167
GH03F154120 0.8 ENCODE 15.6 -0.8 -758 2.6 ARID4B SIN3A YY1 GLIS2 EGR1 ZNF366 EGR2 ZNF263 SP3 SP5 ARHGEF26 ARHGEF26-AS1 LOC105374167
GH03F154132 1.2 FANTOM5 Ensembl ENCODE 15.2 -12.0 -11968 1.0 PKNOX1 INSM2 KLF17 FEZF1 ZNF2 ZNF366 SCRT2 OVOL3 ZEB2 TSHZ1 ARHGEF26-AS1 ARHGEF26 LOC105374167
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around ARHGEF26-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for ARHGEF26-AS1 Gene

Chromosome:
3
Start:
154,024,401 bp from pter
End:
154,121,332 bp from pter
Size:
96,932 bases
Orientation:
Minus strand

Genomic View for ARHGEF26-AS1 Gene

Genes around ARHGEF26-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ARHGEF26-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ARHGEF26-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ARHGEF26-AS1 Gene

Proteins for ARHGEF26-AS1 Gene

Post-translational modifications for ARHGEF26-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ARHGEF26-AS1 Gene

Domains & Families for ARHGEF26-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ARHGEF26-AS1 Gene

Function for ARHGEF26-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ARHGEF26-AS1 Gene

Localization for ARHGEF26-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ARHGEF26-AS1 Gene

Pathways & Interactions for ARHGEF26-AS1 Gene

SuperPathways for ARHGEF26-AS1 Gene

No Data Available

Interacting Proteins for ARHGEF26-AS1 Gene

Gene Ontology (GO) - Biological Process for ARHGEF26-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ARHGEF26-AS1 Gene

Transcripts for ARHGEF26-AS1 Gene

mRNA/cDNA for ARHGEF26-AS1 Gene

(2) Additional mRNA sequences :
(11) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ARHGEF26-AS1 Gene

ARHGEF26 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ARHGEF26-AS1 Gene

No ASD Table

Relevant External Links for ARHGEF26-AS1 Gene

GeneLoc Exon Structure for
ARHGEF26-AS1
ECgene alternative splicing isoforms for
ARHGEF26-AS1

Expression for ARHGEF26-AS1 Gene

mRNA expression in normal human tissues for ARHGEF26-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for ARHGEF26-AS1 Gene

This gene is overexpressed in Brain - Amygdala (x5.3) and Brain - Nucleus accumbens (basal ganglia) (x4.3).

SOURCE GeneReport for Unigene cluster for ARHGEF26-AS1 Gene:

Hs.370221
genes like me logo Genes that share expression patterns with ARHGEF26-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for ARHGEF26-AS1 Gene

Orthologs for ARHGEF26-AS1 Gene

Evolution for ARHGEF26-AS1 Gene

ENSEMBL:
Gene Tree for ARHGEF26-AS1 (if available)
TreeFam:
Gene Tree for ARHGEF26-AS1 (if available)

No data available for Orthologs for ARHGEF26-AS1 Gene

Paralogs for ARHGEF26-AS1 Gene

No data available for Paralogs for ARHGEF26-AS1 Gene

Variants for ARHGEF26-AS1 Gene

Sequence variations from dbSNP and Humsavar for ARHGEF26-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs10513455 -- 154,070,693(+) ATTCA(A/G)TTTGG intron-variant
rs10559112 -- 154,120,968(+) TTAAG(-/ACC)ACCTG intron-variant, upstream-variant-2KB
rs10575793 -- 154,086,911(+) CCATC(-/TCTC)TCTCT intron-variant
rs1060649 -- 154,025,336(-) ATCAT(A/G)CAAAG nc-transcript-variant
rs1060650 -- 154,025,320(-) CAGAG(C/T)GACTC nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for ARHGEF26-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2726080 CNV deletion 23290073
esv3598246 CNV loss 21293372
esv3598247 CNV loss 21293372
nsv478687 CNV novel sequence insertion 20440878
nsv592076 CNV loss 21841781
nsv965223 CNV duplication 23825009

Relevant External Links for ARHGEF26-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ARHGEF26-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ARHGEF26-AS1 Gene

Disorders for ARHGEF26-AS1 Gene

Relevant External Links for ARHGEF26-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ARHGEF26-AS1

No disorders were found for ARHGEF26-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ARHGEF26-AS1 Gene

Publications for ARHGEF26-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for ARHGEF26-AS1 Gene

Sources for ARHGEF26-AS1 Gene

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