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Aliases & Descriptions for ARHGEF1
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases GEF1 2 LBCL2 1 , 2 , 5 LSC 2 P115-RHOGEF 1 , 2 SUB1.5 1 , 2 Sub1.5 3 p115-RhoGEF 3 p115RhoGEF 3
Descriptions 115 kDa guanine nucleotide exchange factor 3 115-kD protein 2 Lsc homolog 2 Rho guanine nucleotide exchange factor (GEF) 1 2 Rho guanine nucleotide exchange factor 1 2
Search outside databases for aliases for ARHGEF1 genePrevious GC identifers: GC19P043026 GC19P042778 GC19P047063
Summaries for ARHGEF1 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for ARHGEF1 : Rho GTPases play a fundamental role in numerous cellular processes that are initiated byextracellular stimuli that work through G protein coupled receptors. The encoded protein may formcomplex with G proteins and stimulate Rho-dependent signals. Multiple alternatively splicedtranscript variants have been found for this gene, but the full-length nature of some variants hasnot been defined. [provided by RefSeq] UniProtKB/Swiss-Prot: ARHG1_HUMAN, Q92888 Function : Seems to play a role in the regulation of RhoA GTPase by guanine nucleotide-bindingalpha-12 (GNA12) and alpha-13 (GNA13) subunits. Acts as GTPase-activating protein (GAP) for GNA12and GNA13, and as guanine nucleotide exchange factor (GEF) for RhoA GTPase. Activated G alpha13/GNA13 stimulates the RhoGEF activity through interaction with the RGS-like domain. This GEFactivity is inhibited by binding to activated GNA12
Gene Wiki entry for ARHGEF1
Genomic Location for ARHGEF1
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the ARHGEF1 gene Entrez Gene cytogenetic band: 19q13.13 Ensembl cytogenetic band: 19q13.2 HGNC cytogenetic band: 19q13.13 ARHGEF1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 19 GeneLoc Exon Structure
GeneLoc location for GC19P047079:
(about GC identifiers )
Start:
47,079,106 bp from pter
End:
47,103,444 bp from pter
Size:
24,339 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000019.8 NT_011109.15 Proteins for ARHGEF1
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: ARHG1_HUMAN, Q92888 (See
protein sequence )Recommended Name: Rho guanine nucleotide exchange factor 1 Size : 912 amino acids; 102435 Da
Subunit : Interacts with RHOA, GNA12 and GNA13. Homooligomerizes through the coiled coil region. Mayinteract with CCPG1 (By similarity). Interacts with CTNNAL1
Subcellular location : Cytoplasm. Membrane. Note=Translocated to the membrane by activated GNA13 orLPA stimulation
Sequence caution : Sequence=CAA70356.1; Type=Frameshift; Positions=904; Sequence=CAA70356.1;Type=Miscellaneous discrepancy; Note=Contaminating sequence. Sequence of unknown origin in theN-terminal part;
PDB structure from and Proteopedia : 1IAP (3D)
 1SHZ (3D)
 
Secondary accessions : O00513 Q8N4J4 Q96BF4 Q96F17 Q9BSB1Alternative splicing : 2 isoforms : Q92888-1 Q92888-2
Post-translational modifications:
Phosphorylated by PKCA1
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (3 alternative transcripts):
NP_004697.2 NP_945328.1 NP_945353.1 ENSEMBL proteins: ENSP00000323044 ENSP00000337261 ENSP00000367394 ENSP00000344429 ENSP00000346532 ENSP00000375841 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 4 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for ARHGEF1: Assays for ARHGEF1:
Protein
Domains/ Families for ARHGEF1(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q92888 ProtoNet protein and cluster: Q92888
2 Blocks protein families : IPB000219 DH domain IPB001849 Pleckstrin-like UniProtKB/Swiss-Prot: ARHG1_HUMAN, Q92888 Domain : The RGSL domain, also known as rgRGS domain, is necessary but not sufficient for GAPactivity Domain : The DH domain is involved in interaction with CCPG1 (By similarity)Similarity : Contains 1 DH (DBL-homology) domainSimilarity : Contains 1 PH domainSimilarity : Contains 1 RGSL (RGS-like) domain
Gene Function for ARHGEF1
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_004706 Applied Biosystems Silencer ® siRNAs for ARHGEF1 Sigma-Aldrich siRNA and siRNA Panels for ARHGEF1 Sigma-Aldrich shRNA for ARHGEF1 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_004706                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_004706                                  untagged cDNA clones in CMV expression vector (see all 4 ): NM_004706  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_199002 UniProtKB/Swiss-Prot: ARHG1_HUMAN, Q92888 Function : Seems to play a role in the regulation of RhoA GTPase by guanine nucleotide-bindingalpha-12 (GNA12) and alpha-13 (GNA13) subunits. Acts as GTPase-activating protein (GAP) for GNA12and GNA13, and as guanine nucleotide exchange factor (GEF) for RhoA GTPase. Activated G alpha13/GNA13 stimulates the RhoGEF activity through interaction with the RGS-like domain. This GEFactivity is inhibited by binding to activated GNA12
2 MGI mutant phenotypes (inferred from 3 alleles ) (MGI details for Arhgef1) :4 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for ARHGEF1
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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4 Sigma-Aldrich "Your Favorite Gene" Pathways for ARHGEF1 (Your Favorite Gene powered by Ingenuity) Gene Network CentralTM Interacting Genes and Proteins Network for ARHGEF1 5/28 Interacting proteins for ARHGEF1 (ENSP00000367394 3 Q92888 1 ) via UniProtKB, MINT, and/or STRING (see all 28
)About this table 2 Gene Ontology (GO) biological process terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0008283 cell proliferation
TAS 8810315 GO:0035023 regulation of Rho protein signal transduction
IEA --
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Drugs & Compounds for ARHGEF1 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for ARHGEF1 2 Novoseek chemical compound relationships for ARHGEF1 gene
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
gtp
46.61
1
12024019 (1)
tyrosine
1.27
1
10821841 (1)
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Transcripts for ARHGEF1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_004706 Sigma-Aldrich siRNA and siRNA Panels for ARHGEF1 Sigma-Aldrich shRNA for ARHGEF1 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_004706 NM_198977 NM_199002
REFSEQ mRNAs for ARHGEF1 gene (3 alternative transcripts): NM_004706.3 NM_198977.1 NM_199002.1
Applied Biosystems TaqMan ® Gene Expression Assays: NM_004706 NM_198977 NM_199002
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_004706                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_004706                                  untagged cDNA clones in CMV expression vector (see all 4 ): NM_004706  
Additional cDNA sequence: AL832294.1 BC005155.2 BC011726.2 BC015652.2 BC034013.1 BC035127.1 BC064996.1 BC067262.1 BT007421.1 CR615730.1 CR620754.1 U64105.1
20 DOTS entries : DT.100801442 DT.100039607 DT.97779113 DT.92438951 DT.95211158 DT.121643665 DT.97760161 DT.100801445 DT.95260447 DT.100800053 DT.92438958 DT.95322545 DT.97760163 DT.121443288 DT.92438950 DT.95155326 DT.102833291 DT.75110803 DT.95221875 DT.113454
24/343 AceView cDNA sequences (see all 343
):CA432485 BQ708891 BG983189 CD672465 BQ962579 BQ652652 BQ073261 AW651746 BF849717 BC015652 BE797545 AA767251 BG767937 BU155745 BT007421 BQ052766 BU149429 BQ054055 BQ220172 AL832294 BC067262 BU155646 BQ231304 AI865820
highest scoring ESTs for ARHGEF1 :U64105 AA281559 AA297511 AA303003 AA481277 AA632772 AA767251 AA827436 AA872531 AI365400
Unigene Cluster for ARHGEF1: Rho guanine nucleotide exchange factor (GEF) 1 Hs.631550 [show with all ESTs ] Unigene Representative Sequence: BC064996 GeneLoc Exon Structure 5/12 Alternative Splicing Database (ASD) splice patterns (SP) for ARHGEF1 (see all 12
) ExUns: 1a · 1b · 1c · 1d ^ 2a · 2b ^ 3 ^ 4 ^ 5 ^ 6a · 6b ^ 7a · 7b ^ 8a · 8b ^ 9a · 9b ^ 10 ^ 11 ^ 12 ^ 13a · 13b ^ 14 ^ 15 ^ 16a · 16b ^ SP1 :                         -       -                 -   -     SP2 :         -   -               -       -                 -   -     SP3 :         -   -         -   -     -       -                 -   -     SP4 :                   -   -     -       -                 -   -     SP5 :                                                 -    
ExUns: 17 ^ 18 ^ 19 ^ 20 ^ 21a · 21b ^ 22 ^ 23 ^ 24 ^ 25 ^ 26 ^ 27 ^ 28 ^ 29 ^ 30 ^ 31 ^ 32 SP1 : -                                   SP2 : -                                   SP3 : -                                   SP4 : -                             -       SP5 : -                             -      
About this scheme ECgene alternative splicing isoforms for ARHGEF1 6 Ensembl transcripts including schematic representations : ENST00000316079
ENST00000337665
ENST00000378152
ENST00000347545
ENST00000354532
ENST00000391981
Expression for ARHGEF1
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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ARHGEF1 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for ARHGEF1 1 / 2 / 3
5 probe-sets matching ARHGEF1 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: --SOURCE GeneReport for Unigene cluster: Hs.631550 Expression variation in blood from EXPOLDB for ARHGEF1
UniProtKB/Swiss-Prot: ARHG1_HUMAN, Q92888 Tissue specificity : Ubiquitously expressed
Orthologs for ARHGEF1
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for ARHGEF1 gene from 5 species
Organism
Gene
Locus
Description
Human Similarity
NCBI accessions
cow (Bos taurus)
ARHGEF11
--
Rho guanine nucleotide exchange factor (GEF) 1
86.76(n) 85.42(a)
513377 XM_591046.3 XP_591046.3
rat (Rattus norvegicus)
Arhgef11
--
Rho guanine nucleotide exchange factor (GEF) 1
85.65(n) 89.37(a)
60323 NM_021694.3 NP_067726.3
mouse (Mus musculus)
Arhgef11 , 5
75
Rho guanine nucleotide exchange factor (GEF) 11, 5
86.17(n) 1 89.21(a) 1
16801 1 NM_008488.1 1 NP_032514.1 1 AK012156 5 AK040093 5 (see all 27 )
fruit fly (Drosophila melanogaster)
RhoGEF23
53E10--F1
gastrulation diacylglycerol binding
36(a)
--
worm (Caenorhabditis elegans)
F13E6.63
X(10733408-10738294)
Tiam-1 like protein
35(a)
--
About this table Species with no ortholog for ARHGEF1 ENSEMBL Gene Tree for ARHGEF1 Paralogs for ARHGEF1 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for ARHGEF1 gene ARHGEF12 2 ARHGEF11 2
SNPs/Variants for ARHGEF1 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for ARHGEF1 (up to first 250kb)
Disorders & Mutations for ARHGEF1
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 601855 1 Novoseek disease relationship for ARHGEF1 gene
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
breast cancer
0.00
1
12748184 (1)
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Medical News for ARHGEF1 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for ARHGEF1 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/55 PubMed articles for ARHGEF1 gene (see all 55
): Characterization, expression and chromosomal localization of a human gene homologous to the mouse Lsc oncogene, with strongest expression in hematopoetic tissues. (PubMed id 9135076) 1, 2, 3, 4 Aasheim H.C....Smeland E.B. (1997) Identification of a novel guanine nucleotide exchange factor for the rho GTPase. (PubMed id 8810315) 2, 3, 4 Hart M.J....Bollag G. (1996) PKCa-induced p115RhoGEF phosphorylation signals endothelial cytoskeletal rearrangement. (PubMed id 12754211) 1, 3, 4 Holinstat M.... Malik A.B. (2003) Structure of the rgRGS domain of p115RhoGEF. (PubMed id 11524686) 1, 3, 4 Chen Z.... Sprang S.R. (2001) Direct stimulation of the guanine nucleotide exchange activity of p115 RhoGEF by Galpha13. (PubMed id 9641916) 1, 3, 4 Hart M.J.... Bollag G. (1998) p115 RhoGEF, a GTPase activating protein for Galpha12 and Galpha13. (PubMed id 9641915) 1, 3, 4 Kozasa T.... Sternweis P.C. (1998) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Association of Lbc Rho guanine nucleotide exchange factor with alpha- catenin-related protein, alpha-catulin/CTNNAL1, supports serum response factor activation. (PubMed id 12270917) 3, 4 Park B.... Toksoz D. (2002) Galpha 13 requires palmitoylation for plasma membrane localization, Rho-dependent signaling, and promotion of p115-RhoGEF membrane binding. (PubMed id 10747909) 3, 4 Bhattacharyya R. and Wedegaertner P.B. (2000) Characterization of G alpha 13-dependent plasma membrane recruitment of p115RhoGEF. (PubMed id 12534370) 1, 3 Bhattacharyya R. and Wedegaertner P.B. (2003)
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Genome Databases showing ARHGEF1
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing ARHGEF1
(According to HUGE )
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--
Specialized Databases showing ARHGEF1 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for ARHGEF1 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for ARHGEF1:
Antibodies & Assays for ARHGEF1   (p115 RhoGEF)
Search Tocris compounds for ARHGEF1
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009