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Aliases for ARHGAP5-AS1 Gene

Subcategory (RNA class) for ARHGAP5-AS1 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for ARHGAP5-AS1 Gene

  • ARHGAP5 Antisense RNA 1 (Head To Head) 2 3 5
  • ARHGAP5 Antisense RNA 1 (Non-Protein Coding) 2 3
  • ARHGAP5 Antisense RNA 1 2 4
  • C14orf128 3 4
  • Chromosome 14 Open Reading Frame 128 2
  • ARHGAP5 Antisense Gene Protein 1 4

External Ids for ARHGAP5-AS1 Gene

ORGUL Members for ARHGAP5-AS1 Gene

Previous HGNC Symbols for ARHGAP5-AS1 Gene

  • C14orf128

Previous GeneCards Identifiers for ARHGAP5-AS1 Gene

  • GC14M032545

Summaries for ARHGAP5-AS1 Gene

GeneCards Summary for ARHGAP5-AS1 Gene

ARHGAP5-AS1 (ARHGAP5 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ARHGAP5-AS1 Gene

Genomics for ARHGAP5-AS1 Gene

Regulatory Elements for ARHGAP5-AS1 Gene

Enhancers for ARHGAP5-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH14F032074 0.8 ENCODE 6.5 -0.4 -362 5.9 HDGF PKNOX1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 SLC30A9 ZNF263 RNU6-8 RNU6-7 RPL21P5 LOC101927124 ARHGAP5-AS1 GC14P032154
GH14F032080 0.5 Ensembl 0.8 -3.9 -3908 0.2 CHD1 RNU6-7 RNU6-8 ARHGAP5-AS1 GC14P032154
GH14F032082 1.2 Ensembl ENCODE 0.4 -6.7 -6692 3.0 ELF3 FEZF1 THRB ZSCAN9 DNMT3B RARA SLC30A9 CREM MIXL1 THAP11 RNU6-7 RNU6-8 ARHGAP5-AS1 GC14P032154
GH14F032085 1 Ensembl 0.4 -9.3 -9308 0.6 ZSCAN5A ZNF664 PRDM1 FOXA1 RNU6-7 RNU6-8 ARHGAP5-AS1 GC14P032154
GH14F032087 0.4 ENCODE 0.4 -10.8 -10827 0.1 INSM2 KLF17 FEZF1 RAD21 RFX5 ZNF366 RCOR1 FOS CEBPB TSHZ1 RNU6-7 RNU6-8 ARHGAP5-AS1 GC14P032154
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around ARHGAP5-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for ARHGAP5-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000416069 -607 4801 HDGF ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 SLC30A9 ZNF263

Genomic Location for ARHGAP5-AS1 Gene

Chromosome:
14
Start:
32,074,946 bp from pter
End:
32,076,793 bp from pter
Size:
1,848 bases
Orientation:
Minus strand

Genomic View for ARHGAP5-AS1 Gene

Genes around ARHGAP5-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ARHGAP5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ARHGAP5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ARHGAP5-AS1 Gene

Proteins for ARHGAP5-AS1 Gene

  • Protein details for ARHGAP5-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96IT6-ARAS1_HUMAN
    Recommended name:
    Putative uncharacterized protein ARHGAP5-AS1
    Protein Accession:
    Q96IT6
    Secondary Accessions:
    • B2RAE2
    • D3DS88

    Protein attributes for ARHGAP5-AS1 Gene

    Size:
    56 amino acids
    Molecular mass:
    6106 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ARHGAP5-AS1 Gene

Post-translational modifications for ARHGAP5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ARHGAP5-AS1 Gene

Domains & Families for ARHGAP5-AS1 Gene

Protein Domains for ARHGAP5-AS1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ARHGAP5-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ARHGAP5-AS1 Gene

Function for ARHGAP5-AS1 Gene

Phenotypes for ARHGAP5-AS1 Gene

GenomeRNAi human phenotypes for ARHGAP5-AS1:
genes like me logo Genes that share phenotypes with ARHGAP5-AS1: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ARHGAP5-AS1 Gene

Localization for ARHGAP5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ARHGAP5-AS1 Gene

Pathways & Interactions for ARHGAP5-AS1 Gene

SuperPathways for ARHGAP5-AS1 Gene

No Data Available

Interacting Proteins for ARHGAP5-AS1 Gene

Gene Ontology (GO) - Biological Process for ARHGAP5-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ARHGAP5-AS1 Gene

Transcripts for ARHGAP5-AS1 Gene

mRNA/cDNA for ARHGAP5-AS1 Gene

(1) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ARHGAP5-AS1 Gene

ARHGAP5 antisense RNA 1 (head to head):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ARHGAP5-AS1 Gene

No ASD Table

Relevant External Links for ARHGAP5-AS1 Gene

GeneLoc Exon Structure for
ARHGAP5-AS1
ECgene alternative splicing isoforms for
ARHGAP5-AS1

Expression for ARHGAP5-AS1 Gene

mRNA expression in normal human tissues for ARHGAP5-AS1 Gene

Protein differential expression in normal tissues from HIPED for ARHGAP5-AS1 Gene

This gene is overexpressed in Retina (60.0) and Testis (9.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for ARHGAP5-AS1 Gene



Protein tissue co-expression partners for ARHGAP5-AS1 Gene

- Elite partner

SOURCE GeneReport for Unigene cluster for ARHGAP5-AS1 Gene:

Hs.496755
genes like me logo Genes that share expression patterns with ARHGAP5-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for ARHGAP5-AS1 Gene

Orthologs for ARHGAP5-AS1 Gene

Evolution for ARHGAP5-AS1 Gene

ENSEMBL:
Gene Tree for ARHGAP5-AS1 (if available)
TreeFam:
Gene Tree for ARHGAP5-AS1 (if available)

No data available for Orthologs for ARHGAP5-AS1 Gene

Paralogs for ARHGAP5-AS1 Gene

No data available for Paralogs for ARHGAP5-AS1 Gene

Variants for ARHGAP5-AS1 Gene

Sequence variations from dbSNP and Humsavar for ARHGAP5-AS1 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type
rs1044832 -- 32,075,503(-) TTTAC(A/G)GTCTG nc-transcript-variant, upstream-variant-2KB
rs111374394 -- 32,076,150(+) CATCC(-/CCGTG)CCGTG nc-transcript-variant, upstream-variant-2KB
rs112295556 -- 32,078,268(+) TCGGG(G/T)TGTAG intron-variant, upstream-variant-2KB
rs112869267 -- 32,075,777(+) TCTCC(C/T)GTGCA nc-transcript-variant, upstream-variant-2KB
rs113307996 -- 32,075,326(+) ATATA(C/T)AGAAA downstream-variant-500B, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for ARHGAP5-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1046526 CNV gain 25217958
nsv564182 CNV gain 21841781

Relevant External Links for ARHGAP5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ARHGAP5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ARHGAP5-AS1 Gene

Disorders for ARHGAP5-AS1 Gene

Relevant External Links for ARHGAP5-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ARHGAP5-AS1

No disorders were found for ARHGAP5-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ARHGAP5-AS1 Gene

Publications for ARHGAP5-AS1 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  2. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh J.H. … Kim N.S. (Mamm. Genome 2005) 3 64
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 4 64
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for ARHGAP5-AS1 Gene

Sources for ARHGAP5-AS1 Gene

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