Free for academic non-profit institutions. Other users need a Commercial license

Aliases for ARHGAP39 Gene

Aliases for ARHGAP39 Gene

  • Rho GTPase Activating Protein 39 2 3 5
  • Rho GTPase-Activating Protein 39 3
  • RhoGAP93B Homolog (Drosophila) 2
  • CrossGAP Homolog (Drosophila) 2
  • RhoGAP93B Homolog 3
  • CrossGAP Homolog 3
  • KIAA1688 4
  • CrGAP 3
  • Vilse 3

External Ids for ARHGAP39 Gene

Previous GeneCards Identifiers for ARHGAP39 Gene

  • GC08M145754
  • GC08M140868

Summaries for ARHGAP39 Gene

GeneCards Summary for ARHGAP39 Gene

ARHGAP39 (Rho GTPase Activating Protein 39) is a Protein Coding gene. Among its related pathways are Signaling by Robo receptor and Developmental Biology.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ARHGAP39 Gene

Genomics for ARHGAP39 Gene

Regulatory Elements for ARHGAP39 Gene

Enhancers for ARHGAP39 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08G144730 0.7 Ensembl 11.4 -29.6 -29581 0.2 GTF2F1 CTCF RB1 RAD21 SCRT2 SMC3 ZNF143 SCRT1 HCFC1 BHLHE40 RPL8 ARHGAP39 ZNF7 ZNF252P-AS1 ZNF252P ZNF517 PIR37450 ZNF251
GH08G144683 1.7 FANTOM5 Ensembl ENCODE 3.6 +14.6 14588 4.5 PKNOX1 CREB3L1 ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B SLC30A9 ZNF766 ZNF34 RECQL4 ADCK5 ZNF252P RPL8 SCRT1 ARHGAP39 KIFC2 LRRC24 ZNF517
GH08G144720 0.4 ENCODE 12.1 -20.3 -20322 1.2 CTCF L3MBTL2 RPL8 ARHGAP39 ZNF517 ZNF7 TMEM249 ZNF252P-AS1 PIR37450 ZNF251
GH08G144620 0.7 FANTOM5 ENCODE 1.7 +78.7 78654 2.5 ZIC2 ZNF34 SLC39A4 SCRT1 ARHGAP39 KIFC2 GC08M144645 ENSG00000255456
GH08G144833 0.3 FANTOM5 1.7 -132.7 -132683 0.0 ZNF517 RPL8 ARHGAP39 PIR32044 ZNF7
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ARHGAP39 on UCSC Golden Path with GeneCards custom track

Promoters for ARHGAP39 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000232280 220 201 NR2F2 EZH2 GABPA

Genomic Location for ARHGAP39 Gene

Chromosome:
8
Start:
144,529,179 bp from pter
End:
144,700,520 bp from pter
Size:
171,342 bases
Orientation:
Minus strand

Genomic View for ARHGAP39 Gene

Genes around ARHGAP39 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ARHGAP39 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ARHGAP39 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ARHGAP39 Gene

Proteins for ARHGAP39 Gene

  • Protein details for ARHGAP39 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9C0H5-RHG39_HUMAN
    Recommended name:
    Rho GTPase-activating protein 39
    Protein Accession:
    Q9C0H5
    Secondary Accessions:
    • B4E1I1

    Protein attributes for ARHGAP39 Gene

    Size:
    1083 amino acids
    Molecular mass:
    121286 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAB21779.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305}; Sequence=BAG64793.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};

    Alternative splice isoforms for ARHGAP39 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ARHGAP39 Gene

Post-translational modifications for ARHGAP39 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for ARHGAP39 Gene

Domains & Families for ARHGAP39 Gene

Gene Families for ARHGAP39 Gene

Suggested Antigen Peptide Sequences for ARHGAP39 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ARHGAP39: view

No data available for UniProtKB/Swiss-Prot for ARHGAP39 Gene

Function for ARHGAP39 Gene

Gene Ontology (GO) - Molecular Function for ARHGAP39 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005096 GTPase activator activity TAS --
genes like me logo Genes that share ontologies with ARHGAP39: view
genes like me logo Genes that share phenotypes with ARHGAP39: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ARHGAP39 Gene

Localization for ARHGAP39 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ARHGAP39 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ARHGAP39 gene
Compartment Confidence
nucleus 5
cytosol 5
cytoskeleton 3

Gene Ontology (GO) - Cellular Components for ARHGAP39 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
GO:0005829 cytosol TAS --
GO:0005856 cytoskeleton IEA --
genes like me logo Genes that share ontologies with ARHGAP39: view

Pathways & Interactions for ARHGAP39 Gene

genes like me logo Genes that share pathways with ARHGAP39: view

Pathways by source for ARHGAP39 Gene

Gene Ontology (GO) - Biological Process for ARHGAP39 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007165 signal transduction IEA --
GO:0043547 positive regulation of GTPase activity IEA --
GO:0051056 regulation of small GTPase mediated signal transduction TAS --
genes like me logo Genes that share ontologies with ARHGAP39: view

No data available for SIGNOR curated interactions for ARHGAP39 Gene

Drugs & Compounds for ARHGAP39 Gene

No Compound Related Data Available

Transcripts for ARHGAP39 Gene

Unigene Clusters for ARHGAP39 Gene

Rho GTPase activating protein 39:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Alternative Splicing Database (ASD) splice patterns (SP) for ARHGAP39 Gene

ExUns: 1 ^ 2 ^ 3a · 3b ^ 4 ^ 5a · 5b ^ 6 ^ 7 ^ 8 ^ 9 ^ 10
SP1: -
SP2:
SP3:

Relevant External Links for ARHGAP39 Gene

GeneLoc Exon Structure for
ARHGAP39
ECgene alternative splicing isoforms for
ARHGAP39

Expression for ARHGAP39 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ARHGAP39 Gene

mRNA differential expression in normal tissues according to GTEx for ARHGAP39 Gene

This gene is overexpressed in Nerve - Tibial (x4.6) and Testis (x4.1).

Protein differential expression in normal tissues from HIPED for ARHGAP39 Gene

This gene is overexpressed in Frontal cortex (23.5), Lung (14.2), Retina (10.0), Fetal Brain (9.7), and Testis (6.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for ARHGAP39 Gene



Protein tissue co-expression partners for ARHGAP39 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of ARHGAP39 Gene:

ARHGAP39

SOURCE GeneReport for Unigene cluster for ARHGAP39 Gene:

Hs.148988

Evidence on tissue expression from TISSUES for ARHGAP39 Gene

  • Nervous system(4.4)
genes like me logo Genes that share expression patterns with ARHGAP39: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for ARHGAP39 Gene

Orthologs for ARHGAP39 Gene

This gene was present in the common ancestor of animals.

Orthologs for ARHGAP39 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ARHGAP39 34 35
  • 98.5 (n)
cow
(Bos Taurus)
Mammalia ARHGAP39 34 35
  • 87.22 (n)
oppossum
(Monodelphis domestica)
Mammalia ARHGAP39 35
  • 87 (a)
OneToOne
dog
(Canis familiaris)
Mammalia ARHGAP39 34 35
  • 86.19 (n)
mouse
(Mus musculus)
Mammalia Arhgap39 34 16 35
  • 84.67 (n)
rat
(Rattus norvegicus)
Mammalia Arhgap39 34
  • 84.34 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia ARHGAP39 35
  • 79 (a)
OneToOne
chicken
(Gallus gallus)
Aves ARHGAP39 35
  • 72 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia ARHGAP39 35
  • 77 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.29319 34
zebrafish
(Danio rerio)
Actinopterygii LOC101884459 34
  • 70.14 (n)
arhgap39 35
  • 66 (a)
OneToOne
Dr.27236 34
fruit fly
(Drosophila melanogaster)
Insecta RhoGAP93B 35
  • 29 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea Y92H12BM.1 35
  • 38 (a)
OneToMany
Y92H12BL.4 35
  • 34 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea CSA.2763 35
  • 62 (a)
OneToOne
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.3354 34
Species where no ortholog for ARHGAP39 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for ARHGAP39 Gene

ENSEMBL:
Gene Tree for ARHGAP39 (if available)
TreeFam:
Gene Tree for ARHGAP39 (if available)

Paralogs for ARHGAP39 Gene

(1) SIMAP similar genes for ARHGAP39 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with ARHGAP39: view

No data available for Paralogs for ARHGAP39 Gene

Variants for ARHGAP39 Gene

Sequence variations from dbSNP and Humsavar for ARHGAP39 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs1000003337 -- 144,531,076(+) TGGAG(A/G)CATGT intron-variant
rs1000006336 -- 144,551,090(+) TTAAC(A/G)GATAC intron-variant
rs1000015872 -- 144,567,593(+) CTAAC(C/T)ATCTC intron-variant
rs1000019963 -- 144,603,913(+) GAGAC(A/G)CTTAG intron-variant
rs1000027693 -- 144,667,716(+) TAGTT(G/T)TGTGA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ARHGAP39 Gene

Variant ID Type Subtype PubMed ID
dgv1207n67 CNV gain 20364138
dgv1242e201 CNV deletion 23290073
dgv1243e201 CNV deletion 23290073
dgv12444n54 CNV loss 21841781
dgv1244e201 CNV deletion 23290073
dgv1245e201 CNV deletion 23290073
dgv4271e59 CNV duplication 20981092
esv1009938 CNV deletion 20482838
esv1114154 CNV insertion 17803354
esv1657415 CNV insertion 17803354
esv22509 CNV loss 19812545
esv23002 CNV loss 19812545
esv23868 CNV gain+loss 19812545
esv2666702 CNV deletion 23128226
esv2667076 CNV deletion 23128226
esv2670099 CNV deletion 23128226
esv2674311 CNV deletion 23128226
esv2738069 CNV deletion 23290073
esv2738072 CNV deletion 23290073
esv2738075 CNV deletion 23290073
esv2738076 CNV deletion 23290073
esv2738077 CNV deletion 23290073
esv2738078 CNV deletion 23290073
esv2738080 CNV deletion 23290073
esv2738082 CNV deletion 23290073
esv2738083 CNV deletion 23290073
esv2738086 CNV deletion 23290073
esv2738088 CNV deletion 23290073
esv28359 CNV loss 19812545
esv3333453 CNV duplication 20981092
esv3576611 CNV gain 25503493
esv3619132 CNV loss 21293372
nsv1077528 CNV duplication 25765185
nsv1128461 CNV deletion 24896259
nsv428208 CNV gain 18775914
nsv522459 CNV loss 19592680
nsv612940 CNV loss 21841781
nsv612951 CNV loss 21841781
nsv831489 CNV loss 17160897
nsv831490 CNV loss 17160897
nsv950824 CNV deletion 24416366
nsv958500 CNV deletion 24416366

Variation tolerance for ARHGAP39 Gene

Residual Variation Intolerance Score: 6.25% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 3.07; 50.69% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ARHGAP39 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ARHGAP39

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ARHGAP39 Gene

Disorders for ARHGAP39 Gene

Relevant External Links for ARHGAP39

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ARHGAP39

No disorders were found for ARHGAP39 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ARHGAP39 Gene

Publications for ARHGAP39 Gene

  1. Cross GTPase-activating protein (CrossGAP)/Vilse links the Roundabout receptor to Rac to regulate midline repulsion. (PMID: 15755809) Hu H. … Bashaw G.J. (Proc. Natl. Acad. Sci. U.S.A. 2005) 2 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  3. Prediction of the coding sequences of unidentified human genes. XIX. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PMID: 11214970) Nagase T. … Ohara O. (DNA Res. 2000) 3 4 64
  4. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3 64
  5. A human interactome in three quantitative dimensions organized by stoichiometries and abundances. (PMID: 26496610) Hein M.Y. … Mann M. (Cell 2015) 3 64

Products for ARHGAP39 Gene

Sources for ARHGAP39 Gene

Content
Loading form....