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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

ARHGAP36 Gene

protein-coding   GIFtS: 46
GCID: GC0XP130192

Rho GTPase Activating Protein 36

  Search for ARHGAP36
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
Rho GTPase Activating Protein 361 2
Rho GTPase-Activating Protein 362

External Ids:    HGNC: 263881   Entrez Gene: 1587632   Ensembl: ENSG000001472567   UniProtKB: Q6ZRI83   

Export aliases for ARHGAP36 gene to outside databases

Previous GC identifer: GC0XP119585


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for ARHGAP36 Gene: 
ARHGAP36 (Rho GTPase activating protein 36) is a protein-coding gene. Among its related super-pathways are Signaling by Rho GTPases and Signaling by GPCR. GO annotations related to this gene include GTPase activator activity. An important paralog of this gene is STARD13.

UniProtKB/Swiss-Prot: RHG36_HUMAN, Q6ZRI8
Function: GTPase activator for the Rho-type GTPases by converting them to an inactive GDP-bound state (By
similarity)




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000023.10  NT_011786.16  NC_018934.2  
Regulatory elements:
   Search SABiosciences Regulatory transcription factor binding sites for ARHGAP36
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search SABiosciences Chromatin IP Primers for ARHGAP36

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ARHGAP36


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: Xq26.1   Ensembl cytogenetic band:  Xq26.1   HGNC cytogenetic band: Xq26.1

ARHGAP36 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ARHGAP36 gene location

GeneLoc information about chromosome X         GeneLoc Exon Structure

GeneLoc location for GC0XP130192:  view genomic region     (about GC identifiers)

Start:
130,192,216 bp from pter      End:
130,223,857 bp from pter
Size:
31,642 bases      Orientation:
plus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: RHG36_HUMAN, Q6ZRI8 (See protein sequence)
Recommended Name: Rho GTPase-activating protein 36 precursor  
Size: 547 amino acids; 61664 Da
Sequence caution: Sequence=AAH63790.1; Type=Erroneous initiation; Note=Translation N-terminally extended;
Sequence=CAI41400.1; Type=Erroneous initiation; Note=Translation N-terminally extended;
Secondary accessions: B7Z234 B7Z439 Q5JRL9 Q5JRM0 Q5JRM1 Q96NU6
Alternative splicing: 5 isoforms:  Q6ZRI8-1   Q6ZRI8-2   Q6ZRI8-3   Q6ZRI8-4   Q6ZRI8-5   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for ARHGAP36: NX_Q6ZRI8

Explore proteomics data for ARHGAP36 at MOPED 

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_Q6ZRI8

  • ARHGAP36 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    ARHGAP36 Protein Expression
    REFSEQ proteins (2 alternative transcripts): 
    NP_001269536.1  NP_659404.2  

    ENSEMBL proteins: 
     ENSP00000276211   ENSP00000359960   ENSP00000409218   ENSP00000408515   ENSP00000359959  
    Reactome Protein details: Q6ZRI8
    Human Recombinant Protein Products for ARHGAP36: 
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    Cloud-Clone Corp. Proteins for ARHGAP36 

    Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005622intracellular ----
    GO:0005829cytosol TAS--

    ARHGAP36 for ontologies           About GeneDecksing



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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    HGNC Gene Families: 
    ARHGAP: Rho GTPase activating proteins

    2 InterPro protein domains:
     IPR008936 Rho_GTPase_activation_prot
     IPR000198 RhoGAP_dom

    Graphical View of Domain Structure for InterPro Entry Q6ZRI8

    ProtoNet protein and cluster: Q6ZRI8

    1 Blocks protein domain: IPB000198 RhoGAP domain

    UniProtKB/Swiss-Prot: RHG36_HUMAN, Q6ZRI8
    Similarity: Contains 1 Rho-GAP domain


    ARHGAP36 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

    Molecular Function:

         UniProtKB/Swiss-Prot Summary: RHG36_HUMAN, Q6ZRI8
    Function: GTPase activator for the Rho-type GTPases by converting them to an inactive GDP-bound state (By
    similarity)

         Gene Ontology (GO): 1 molecular function term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005096GTPase activator activity IEA--
         
    ARHGAP36 for ontologies           About GeneDecksing


    Phenotypes:
         1 GenomeRNAi human phenotype for ARHGAP36:
     Synthetic lethal with Ras 

    Animal Models:
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    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section

    SuperPaths for ARHGAP36 About                                                                                                See pathways by source

    SuperPathContained pathways About
    1Rho GTPase cycle
    Rho GTPase cycle1.00
    Signaling by Rho GTPases1.00
    2Signaling by GPCR
    Signal Transduction0.55

    Pathways by source                                                                                                                                                                 See SuperPaths
    Show all pathways


    3        Reactome Pathways for ARHGAP36
        Signaling by Rho GTPases
    Signal Transduction
    Rho GTPase cycle



    ARHGAP36 for pathways           About GeneDecksing

    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for ARHGAP36

    Gene Ontology (GO): 3 biological process terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0007165signal transduction ----
    GO:0007264small GTPase mediated signal transduction TAS--
    GO:0051056regulation of small GTPase mediated signal transduction TAS--

    ARHGAP36 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for ARHGAP36 (RHG36)

    Search CenterWatch for drugs/clinical trials and news about ARHGAP36 / RHG36

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for ARHGAP36 gene (2 alternative transcripts): 
    NM_001282607.1  NM_144967.3  

    Unigene Cluster for ARHGAP36:

    Rho GTPase activating protein 36
    Hs.22905  [show with all ESTs]
    Unigene Representative Sequence: NM_144967
    5 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000276211(uc004evz.3 uc004ewa.3) ENST00000370922 ENST00000423277
    ENST00000412432(uc004ewb.3) ENST00000370921(uc004ewc.3)
    miRNA
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    hsa-miR-19b-2* hsa-miR-29a hsa-miR-192 hsa-miR-449a hsa-miR-4275 hsa-miR-1273d hsa-miR-890 hsa-miR-3148
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    Additional mRNA sequence: 

    AK054620.1 AK128203.1 AK294274.1 AK296748.1 BC063790.1 

    4 DOTS entries:

    DT.310874  DT.99971982  DT.310875  DT.95239492 

    24/46 AceView cDNA sequences (see all 46):

    BX417569 BX354250 CD106354 CD105854 CD107623 CR619310 AK054620 NM_144967 
    CD107189 AI082418 AK128203 BQ716809 CR625224 Z39736 BG716877 R44947 
    AL521293 BX354249 BC063790 CD237772 Z43680 CD109035 CD106159 AA405456 

    GeneLoc Exon Structure

    5/6 Alternative Splicing Database (ASD) splice patterns (SP) for ARHGAP36 (see all 6)    About this scheme

    ExUns: 1 ^ 2 ^ 3 ^ 4a · 4b ^ 5a · 5b · 5c ^ 6 ^ 7a · 7b ^ 8a · 8b ^ 9 ^ 10a · 10b ^ 11 ^ 12 ^ 13 ^ 14 ^ 15
    SP1:              -     -           -     -     -           -                                                                     
    SP2:                                -     -     -           -                                                                     
    SP3:                                            -           -                                                                     
    SP4:                                                        -                                                                     
    SP5:                                                                                                                              


    ECgene alternative splicing isoforms for ARHGAP36

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    ARHGAP36 expression in normal human tissues (normalized intensities)      ARHGAP36 embryonic expression: see
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: CTCTGGTAAC
    ARHGAP36 Expression
    About this image


    ARHGAP36 expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database 
     5/6 selected tissues (see all 6) fully expand
     
     Pancreas (Endocrine System)    fully expand to see all 2 entries
             Endocrine Progenitor Cells Ventral Pancreatic Bud
     
     Neural Tube (Nervous System)    fully expand to see all 2 entries
             Metencephalon
     
     Gut Tube (Gastrointestinal Tract)
             Foregut
     
     Nose (Sensory Organs)
             sensory organ/nose/nasal cavity   
     
     Skeletal Muscle (Muscoskeletal System)
             cavities and their linings/intraembryonic coelom/diaphragm   

    See ARHGAP36 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for ARHGAP36

    SOURCE GeneReport for Unigene cluster: Hs.22905
        SABiosciences Custom PCR Arrays for ARHGAP36
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    In Situ
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of animals.

    Orthologs for ARHGAP36 gene from 5/10 species (see all 10)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Arhgap361 , 5 Rho GTPase activating protein 361, 5 85.13(n)1
    82.12(a)1
      X (25.95 cM)5
    754041  NM_001081123.11  NP_001074592.11 
     494639455 
    chicken
    (Gallus gallus)
    Aves ARHGAP366
    Rho GTPase activating protein 36
    37(a)
    1 ↔ 1
    4(9488938-9502477)
    lizard
    (Anolis carolinensis)
    Reptilia --
    Uncharacterized protein
    18(a)
    possible ortholog
    3(119450644-119451243)
    zebrafish
    (Danio rerio)
    Actinopterygii ARHGAP366
    Rho GTPase activating protein 36
    26(a)
    1 ↔ 1
    7(52819637-52916487)
    worm
    (Caenorhabditis elegans)
    Secernentea rga-66
    Protein RGA-6, isoform a
    13(a)
    1 → many
    I(4850682-4867825)


    ENSEMBL Gene Tree for ARHGAP36 (if available)
    TreeFam Gene Tree for ARHGAP36 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for ARHGAP36 gene
    STARD132  ARHGAP62  ARHGAP402  ARHGAP182  DLC12  ARHGAP11A2  ARHGAP282  ARHGAP11B2  
    STARD82  
    1 SIMAP similar gene for ARHGAP36 using alignment to 2 protein entries:     RHG36_HUMAN (see all proteins):
    ARHGAP6

    ARHGAP36 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/507 SNPs in ARHGAP36 are shown (see all 507)    About this table     
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr X posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1911207431,2
    --130190370(+) GTTTCC/TGAGGA 1 -- us2k10--------
    rs626012831,2
    C,F--130190372(+) TTCCGT/AGGACT 1 -- us2k11Minor allele frequency- A:0.00NA 2
    rs2008967001,2
    --130190443(+) GTTGG-/AAAAAA 1 -- us2k10--------
    rs351825721,2
    C,F--130190590(+) TATTCA/GTAAAG 1 -- us2k11Minor allele frequency- G:0.00NA 2
    rs1810111501,2
    --130190617(+) AGCAGA/GTCTGG 1 -- us2k10--------
    rs1463852721,2
    --130190834(+) GCATTA/TATACT 1 -- us2k10--------
    rs1394180121,2
    --130190841(+) TACTAA/GTATCA 1 -- us2k10--------
    rs760212351,2
    C,F--130191183(+) GGGCTG/CTTTTT 1 -- us2k12Minor allele frequency- C:0.00NA 4
    rs1860172371,2
    --130191200(+) ACCAGA/GGGCCC 1 -- us2k10--------
    rs1908723171,2
    --130191274(+) ATAAAA/GGAAGT 1 -- us2k10--------

    HapMap Linkage Disequilibrium report for ARHGAP36 (130192216 - 130223857 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 1 variation for ARHGAP36:    About this table     
    Variant IDTypeSubtypePubMed ID
    nsv523130CNV Gain19592680

    SABiosciences Cancer Mutation PCR Assays
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    DNA2.0 Custom Variant and Variant Library Synthesis for ARHGAP36

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for ARHGAP36 gene integrated from 9 sources:
    (articles sorted by number of sources associating them with ARHGAP36)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. The DNA sequence of the human X chromosome. (PubMed id 15772651)1, 2 Ross M.T.... Bentley D.R. (2005)
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    4. Drafting the CLN3 protein interactome in SH-SY5Y human neuroblastoma cells: a label-free quantitative proteomics approach. (PubMed id 23464991)1 Scifo E....Lalowski M. (2013)
    5. Toward a confocal subcellular atlas of the human proteome. (PubMed id 18029348)1 Barbe L....Andersson-Svahn H. (2008)
    6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)

    (in PubMed, OMIM, and NCBI Bookshelf)
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    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 158763 HGNC: 26388 AceView: FLJ30058 Ensembl:ENSG00000147256 euGenes: HUgn158763
    ECgene: ARHGAP36 H-InvDB: ARHGAP36

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for ARHGAP36 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for ARHGAP36 gene:
    Search GeneIP for patents involving ARHGAP36

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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    GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 4 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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