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ARHGAP27P1-BPTFP1-KPNA2P3 Gene(Pseudogene)

ARHGAP27P1-BPTFP1-KPNA2P3 Readthrough, Transcribed Pseudogene

GCID:
GC17M064751
GIFtS:
9

Aliases for ARHGAP27P1-BPTFP1-KPNA2P3 Gene

Aliases for ARHGAP27P1-BPTFP1-KPNA2P3 Gene

  • ARHGAP27P1-BPTFP1-KPNA2P3 Readthrough, Transcribed Pseudogene 2 3 5

External Ids for ARHGAP27P1-BPTFP1-KPNA2P3 Gene

Summaries for ARHGAP27P1-BPTFP1-KPNA2P3 Gene

Entrez Gene Summary for ARHGAP27P1-BPTFP1-KPNA2P3 Gene

  • This locus represents naturally-occurring readthrough transcription between multiple unprocessed pseudogene loci. Readthrough transcripts likely do not encode functional proteins. [provided by RefSeq, Dec 2016]

GeneCards Summary for ARHGAP27P1-BPTFP1-KPNA2P3 Gene

ARHGAP27P1-BPTFP1-KPNA2P3 (ARHGAP27P1-BPTFP1-KPNA2P3 Readthrough, Transcribed Pseudogene) is a Pseudogene.

Additional gene information for ARHGAP27P1-BPTFP1-KPNA2P3 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ARHGAP27P1-BPTFP1-KPNA2P3 Gene

Genomics for ARHGAP27P1-BPTFP1-KPNA2P3 Gene

Regulatory Elements for ARHGAP27P1-BPTFP1-KPNA2P3 Gene

Enhancers for ARHGAP27P1-BPTFP1-KPNA2P3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17H064808 1.4 Ensembl ENCODE dbSUPER 19.7 -27.2 -27194 1 HDGF PKNOX1 FOXA2 ARID4B SIN3A ZBTB7B GLIS2 FOS ATF7 ZNF592 ARHGAP27P1-BPTFP1-KPNA2P3 FTSJ3 POLG2 SLC16A6P1 GC17M064817 ARHGAP27P1
GH17H064779 1.1 ENCODE dbSUPER 18.4 +0.7 698 2 PKNOX1 SIN3A ZNF76 ZBTB40 ZBTB7B RFX5 GLIS2 ELK1 EGR2 HCFC1 ARHGAP27P1-BPTFP1-KPNA2P3 LOC101929240 MIR6080
GH17H064792 1 Ensembl ENCODE dbSUPER 19.1 -11.9 -11871 2 ZFHX2 EGR1 IKZF1 EGR2 ARHGAP27P1-BPTFP1-KPNA2P3 LOC101929240 ARHGAP27P1 GC17M064817
GH17H064815 1 ENCODE dbSUPER 14.1 -34.0 -34043 1 SMARCA5 SMARCE1 HDGF ZNF687 NFIB SIN3A CHD1 MNT PAX8 DPF2 ARHGAP27P1-BPTFP1-KPNA2P3 GC17M064817 ARHGAP27P1
GH17H064794 0.6 dbSUPER 19.1 -14.0 -14000 1 SP1 ZFHX2 TARDBP ZEB2 ZEB1 EGR2 FOXP1 ARHGAP27P1-BPTFP1-KPNA2P3 ARHGAP27P1 GC17M064817
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ARHGAP27P1-BPTFP1-KPNA2P3 on UCSC Golden Path with GeneCards custom track

Genomic Location for ARHGAP27P1-BPTFP1-KPNA2P3 Gene

Chromosome:
17
Start:
64,749,663 bp from pter
End:
64,781,707 bp from pter
Size:
32,045 bases
Orientation:
Minus strand

Genomic View for ARHGAP27P1-BPTFP1-KPNA2P3 Gene

Genes around ARHGAP27P1-BPTFP1-KPNA2P3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ARHGAP27P1-BPTFP1-KPNA2P3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ARHGAP27P1-BPTFP1-KPNA2P3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ARHGAP27P1-BPTFP1-KPNA2P3 Gene

Proteins for ARHGAP27P1-BPTFP1-KPNA2P3 Gene

Post-translational modifications for ARHGAP27P1-BPTFP1-KPNA2P3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ARHGAP27P1-BPTFP1-KPNA2P3 Gene

Domains & Families for ARHGAP27P1-BPTFP1-KPNA2P3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ARHGAP27P1-BPTFP1-KPNA2P3 Gene

Function for ARHGAP27P1-BPTFP1-KPNA2P3 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ARHGAP27P1-BPTFP1-KPNA2P3 Gene

Localization for ARHGAP27P1-BPTFP1-KPNA2P3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ARHGAP27P1-BPTFP1-KPNA2P3 Gene

Pathways & Interactions for ARHGAP27P1-BPTFP1-KPNA2P3 Gene

SuperPathways for ARHGAP27P1-BPTFP1-KPNA2P3 Gene

No Data Available

Interacting Proteins for ARHGAP27P1-BPTFP1-KPNA2P3 Gene

Gene Ontology (GO) - Biological Process for ARHGAP27P1-BPTFP1-KPNA2P3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ARHGAP27P1-BPTFP1-KPNA2P3 Gene

Drugs & Compounds for ARHGAP27P1-BPTFP1-KPNA2P3 Gene

No Compound Related Data Available

Transcripts for ARHGAP27P1-BPTFP1-KPNA2P3 Gene

mRNA/cDNA for ARHGAP27P1-BPTFP1-KPNA2P3 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ARHGAP27P1-BPTFP1-KPNA2P3 Gene

No ASD Table

Relevant External Links for ARHGAP27P1-BPTFP1-KPNA2P3 Gene

GeneLoc Exon Structure for
ARHGAP27P1-BPTFP1-KPNA2P3
ECgene alternative splicing isoforms for
ARHGAP27P1-BPTFP1-KPNA2P3

Expression for ARHGAP27P1-BPTFP1-KPNA2P3 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ARHGAP27P1-BPTFP1-KPNA2P3 Gene

Orthologs for ARHGAP27P1-BPTFP1-KPNA2P3 Gene

Evolution for ARHGAP27P1-BPTFP1-KPNA2P3 Gene

ENSEMBL:
Gene Tree for ARHGAP27P1-BPTFP1-KPNA2P3 (if available)
TreeFam:
Gene Tree for ARHGAP27P1-BPTFP1-KPNA2P3 (if available)

No data available for Orthologs for ARHGAP27P1-BPTFP1-KPNA2P3 Gene

Paralogs for ARHGAP27P1-BPTFP1-KPNA2P3 Gene

No data available for Paralogs for ARHGAP27P1-BPTFP1-KPNA2P3 Gene

Variants for ARHGAP27P1-BPTFP1-KPNA2P3 Gene

Sequence variations from dbSNP and Humsavar for ARHGAP27P1-BPTFP1-KPNA2P3 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1000028494 -- 64,778,237(+) GGGGG(C/T)CTGCA intron-variant, nc-transcript-variant
rs1000394049 -- 64,772,499(+) CATAC(A/T)CATAA intron-variant
rs1000451604 -- 64,761,647(+) TTGAA(A/C)CCAGG intron-variant
rs1000687729 -- 64,758,048(+) AGGAA(A/G)ATCCT intron-variant
rs1000730293 -- 64,761,389(+) ACAGC(C/T)TGGGC intron-variant

Relevant External Links for ARHGAP27P1-BPTFP1-KPNA2P3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ARHGAP27P1-BPTFP1-KPNA2P3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ARHGAP27P1-BPTFP1-KPNA2P3 Gene

Disorders for ARHGAP27P1-BPTFP1-KPNA2P3 Gene

Relevant External Links for ARHGAP27P1-BPTFP1-KPNA2P3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ARHGAP27P1-BPTFP1-KPNA2P3

No disorders were found for ARHGAP27P1-BPTFP1-KPNA2P3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ARHGAP27P1-BPTFP1-KPNA2P3 Gene

Publications for ARHGAP27P1-BPTFP1-KPNA2P3 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 60
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60
  4. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 60

Products for ARHGAP27P1-BPTFP1-KPNA2P3 Gene

Sources for ARHGAP27P1-BPTFP1-KPNA2P3 Gene

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