Free for academic non-profit institutions. Other users need a Commercial license

Aliases for ARHGAP27P1 Gene

Aliases for ARHGAP27P1 Gene

  • Rho GTPase Activating Protein 27 Pseudogene 1 2 3

External Ids for ARHGAP27P1 Gene

Summaries for ARHGAP27P1 Gene

GeneCards Summary for ARHGAP27P1 Gene

ARHGAP27P1 (Rho GTPase Activating Protein 27 Pseudogene 1) is a Pseudogene.

Additional gene information for ARHGAP27P1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ARHGAP27P1 Gene

Genomics for ARHGAP27P1 Gene

Regulatory Elements for ARHGAP27P1 Gene

Enhancers for ARHGAP27P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17H064786 1.1 ENCODE dbSUPER 0.4 -5.5 -5537 3 SOX13 KLF1 FOXA2 SAP130 CEBPG THRB TEAD3 MIXL1 THAP11 SOX5 LOC101929240 ARHGAP27P1 GC17M064817
GH17H064808 1.4 Ensembl ENCODE dbSUPER 0.3 -26.9 -26902 1 HDGF PKNOX1 FOXA2 ARID4B SIN3A ZBTB7B GLIS2 FOS ATF7 ZNF592 ARHGAP27P1-BPTFP1-KPNA2P3 FTSJ3 POLG2 SLC16A6P1 GC17M064817 ARHGAP27P1
GH17H064792 1 Ensembl ENCODE dbSUPER 0.4 -11.6 -11579 2 ZFHX2 EGR1 IKZF1 EGR2 ARHGAP27P1-BPTFP1-KPNA2P3 LOC101929240 ARHGAP27P1 GC17M064817
GH17H064815 1 ENCODE dbSUPER 0.3 -33.8 -33751 1 SMARCA5 SMARCE1 HDGF ZNF687 NFIB SIN3A CHD1 MNT PAX8 DPF2 ARHGAP27P1-BPTFP1-KPNA2P3 GC17M064817 ARHGAP27P1
GH17H064794 0.6 dbSUPER 0.4 -13.7 -13708 1 SP1 ZFHX2 TARDBP ZEB2 ZEB1 EGR2 FOXP1 ARHGAP27P1-BPTFP1-KPNA2P3 ARHGAP27P1 GC17M064817
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ARHGAP27P1 on UCSC Golden Path with GeneCards custom track

Promoters for ARHGAP27P1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000284127 599 401 GTF2F1 ZNF687 RFX1 ZNF398 GABPA ZFHX2 POLR2A ZBTB26 EGR2 EZH2
ENSR00000284128 1099 201 GTF2F1 SIN3A ZNF76 ZBTB40 ZBTB7B MTA3 GLIS2 GATA3 ZBTB20 EZH2
ENSR00000097022 1599 401 PKNOX1 SIN3A ZNF76 ZBTB40 ZBTB7B RFX5 MTA3 GLIS2 ELK1 POLR2A

Genomic Location for ARHGAP27P1 Gene

Chromosome:
17
Start:
64,749,662 bp from pter
End:
64,781,999 bp from pter
Size:
32,338 bases
Orientation:
Minus strand

Genomic View for ARHGAP27P1 Gene

Genes around ARHGAP27P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ARHGAP27P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ARHGAP27P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ARHGAP27P1 Gene

Proteins for ARHGAP27P1 Gene

Post-translational modifications for ARHGAP27P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ARHGAP27P1 Gene

Domains & Families for ARHGAP27P1 Gene

Gene Families for ARHGAP27P1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ARHGAP27P1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ARHGAP27P1 Gene

Function for ARHGAP27P1 Gene

Phenotypes for ARHGAP27P1 Gene

GenomeRNAi human phenotypes for ARHGAP27P1:
genes like me logo Genes that share phenotypes with ARHGAP27P1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ARHGAP27P1 Gene

Localization for ARHGAP27P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ARHGAP27P1 Gene

Pathways & Interactions for ARHGAP27P1 Gene

SuperPathways for ARHGAP27P1 Gene

No Data Available

Interacting Proteins for ARHGAP27P1 Gene

Gene Ontology (GO) - Biological Process for ARHGAP27P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ARHGAP27P1 Gene

Drugs & Compounds for ARHGAP27P1 Gene

No Compound Related Data Available

Transcripts for ARHGAP27P1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for ARHGAP27P1 Gene

No ASD Table

Relevant External Links for ARHGAP27P1 Gene

GeneLoc Exon Structure for
ARHGAP27P1
ECgene alternative splicing isoforms for
ARHGAP27P1

Expression for ARHGAP27P1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ARHGAP27P1 Gene

Orthologs for ARHGAP27P1 Gene

No data available for Orthologs and Evolution for ARHGAP27P1 Gene

Paralogs for ARHGAP27P1 Gene

No data available for Paralogs for ARHGAP27P1 Gene

Variants for ARHGAP27P1 Gene

Sequence variations from dbSNP and Humsavar for ARHGAP27P1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1000028494 -- 64,778,237(+) GGGGG(C/T)CTGCA intron-variant, nc-transcript-variant
rs1002444669 -- 64,780,457(+) CGCGG(A/C)ATCGG nc-transcript-variant, upstream-variant-2KB
rs1003040605 -- 64,781,759(+) TCCAG(C/G)GAGGA intron-variant, upstream-variant-2KB
rs1003500727 -- 64,782,165(+) ACGAA(A/G)AGAAG upstream-variant-2KB
rs1003926612 -- 64,777,807(+) CTTTT(-/AAAAAAA)AAAAA intron-variant

Relevant External Links for ARHGAP27P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ARHGAP27P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ARHGAP27P1 Gene

Disorders for ARHGAP27P1 Gene

Relevant External Links for ARHGAP27P1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ARHGAP27P1

No disorders were found for ARHGAP27P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ARHGAP27P1 Gene

Publications for ARHGAP27P1 Gene

  1. 2.5 (PMID: 27836757) Deng X … Qian B (Biochimica et biophysica acta 2017) 2 3 60
  2. Analysis of Microarray Data on Gene Expression and Methylation to Identify Long Non-coding RNAs in Non-small Cell Lung Cancer. (PMID: 27849024) Feng N … Qian B (Scientific reports 2016) 3 60
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 60
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for ARHGAP27P1 Gene

Sources for ARHGAP27P1 Gene

Content
Loading form....