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Aliases for ARHGAP26-IT1 Gene

Subcategory (RNA class) for ARHGAP26-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ARHGAP26-IT1 Gene

  • ARHGAP26 Intronic Transcript 1 2 3 5
  • ARHGAP26 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for ARHGAP26-IT1 Gene

Previous GeneCards Identifiers for ARHGAP26-IT1 Gene

  • GC00U933389
  • GC05P142573

Summaries for ARHGAP26-IT1 Gene

GeneCards Summary for ARHGAP26-IT1 Gene

ARHGAP26-IT1 (ARHGAP26 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ARHGAP26-IT1 Gene

Genomics for ARHGAP26-IT1 Gene

Regulatory Elements for ARHGAP26-IT1 Gene

Enhancers for ARHGAP26-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05F143194 0.7 Ensembl 13.9 +2.8 2802 1.0 HLF CEBPB RAD21 ARHGAP26-IT1 PIR55380
GH05F143204 1.4 FANTOM5 Ensembl ENCODE 13.1 +14.1 14074 4.8 HDGF PKNOX1 WRNIP1 SIN3A GATA2 ZNF143 ZNF207 JUNB TBX21 ZNF623 ARHGAP26-IT1 LINC01844 ARHGAP26 PIR55380
GH05F143199 1.1 Ensembl ENCODE 12.4 +8.3 8328 2.4 HDAC1 PKNOX1 CBX3 MLX RAD21 GATA2 FOS CREM THAP11 ZBTB11 ARHGAP26-IT1 PIR55380
GH05F143182 1.2 FANTOM5 Ensembl ENCODE 10.6 -9.1 -9137 1.5 TBP TBL1XR1 WRNIP1 BMI1 RAD21 GATA2 SCRT2 ZNF143 ETV6 CREM ARHGAP26-IT1 LINC01844 NR3C1 GC05M142946
GH05F143187 0.9 Ensembl ENCODE 0.8 -4.9 -4900 0.4 ARHGAP26-IT1 GC05M142946
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around ARHGAP26-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for ARHGAP26-IT1 Gene

Chromosome:
5
Start:
143,192,500 bp from pter
End:
143,194,166 bp from pter
Size:
1,667 bases
Orientation:
Plus strand

Genomic View for ARHGAP26-IT1 Gene

Genes around ARHGAP26-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ARHGAP26-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ARHGAP26-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ARHGAP26-IT1 Gene

Proteins for ARHGAP26-IT1 Gene

Post-translational modifications for ARHGAP26-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ARHGAP26-IT1 Gene

Domains & Families for ARHGAP26-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ARHGAP26-IT1 Gene

Function for ARHGAP26-IT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ARHGAP26-IT1 Gene

Localization for ARHGAP26-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ARHGAP26-IT1 Gene

Pathways & Interactions for ARHGAP26-IT1 Gene

SuperPathways for ARHGAP26-IT1 Gene

No Data Available

Interacting Proteins for ARHGAP26-IT1 Gene

Gene Ontology (GO) - Biological Process for ARHGAP26-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ARHGAP26-IT1 Gene

Transcripts for ARHGAP26-IT1 Gene

mRNA/cDNA for ARHGAP26-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ARHGAP26-IT1 Gene

No ASD Table

Relevant External Links for ARHGAP26-IT1 Gene

GeneLoc Exon Structure for
ARHGAP26-IT1
ECgene alternative splicing isoforms for
ARHGAP26-IT1

Expression for ARHGAP26-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ARHGAP26-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for ARHGAP26-IT1 Gene

This gene is overexpressed in Testis (x38.9).
genes like me logo Genes that share expression patterns with ARHGAP26-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for ARHGAP26-IT1 Gene

Orthologs for ARHGAP26-IT1 Gene

Evolution for ARHGAP26-IT1 Gene

ENSEMBL:
Gene Tree for ARHGAP26-IT1 (if available)
TreeFam:
Gene Tree for ARHGAP26-IT1 (if available)

No data available for Orthologs for ARHGAP26-IT1 Gene

Paralogs for ARHGAP26-IT1 Gene

No data available for Paralogs for ARHGAP26-IT1 Gene

Variants for ARHGAP26-IT1 Gene

Sequence variations from dbSNP and Humsavar for ARHGAP26-IT1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs113265006 -- 143,193,245(+) CTTTT(C/T)TTTTT intron-variant
rs113335980 -- 143,190,557(+) AAAGA(-/T)ATTCC intron-variant, upstream-variant-2KB
rs114057962 -- 143,192,147(+) ATGTA(A/G)CATCA intron-variant, upstream-variant-2KB
rs115305253 -- 143,193,649(+) AAGCC(A/G)TAAAG intron-variant
rs115670685 -- 143,191,450(+) GTGGC(C/T)GAGAA intron-variant, upstream-variant-2KB

Relevant External Links for ARHGAP26-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ARHGAP26-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ARHGAP26-IT1 Gene

Disorders for ARHGAP26-IT1 Gene

Relevant External Links for ARHGAP26-IT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ARHGAP26-IT1

No disorders were found for ARHGAP26-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ARHGAP26-IT1 Gene

Publications for ARHGAP26-IT1 Gene

No publications were found for ARHGAP26-IT1 Gene.

Products for ARHGAP26-IT1 Gene

Sources for ARHGAP26-IT1 Gene

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