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Aliases for ARHGAP23 Gene

Aliases for ARHGAP23 Gene

  • Rho GTPase Activating Protein 23 2 3 5
  • Rho-Type GTPase-Activating Protein 23 4
  • KIAA1501 4

External Ids for ARHGAP23 Gene

Previous GeneCards Identifiers for ARHGAP23 Gene

  • GC17P036984
  • GC17P033825
  • GC17P036584
  • GC17P032409

Summaries for ARHGAP23 Gene

Entrez Gene Summary for ARHGAP23 Gene

  • The RHO (see ARHA; MIM 165390) family of small GTPases are involved in signal transduction through transmembrane receptors, and they are inactive in the GDP-bound form and active in the GTP-bound form. GTPase-activating proteins, such as ARHGAP23, inactivate RHO family proteins by stimulating their hydrolysis of GTP (Katoh and Katoh, 2004 [PubMed 15254754]).[supplied by OMIM, Mar 2008]

GeneCards Summary for ARHGAP23 Gene

ARHGAP23 (Rho GTPase Activating Protein 23) is a Protein Coding gene. Among its related pathways are Signaling by GPCR and p75 NTR receptor-mediated signalling. GO annotations related to this gene include GTPase activator activity. An important paralog of this gene is ARHGAP21.

UniProtKB/Swiss-Prot for ARHGAP23 Gene

  • GTPase activator for the Rho-type GTPases by converting them to an inactive GDP-bound state.

No data available for CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ARHGAP23 Gene

Genomics for ARHGAP23 Gene

Regulatory Elements for ARHGAP23 Gene

Enhancers for ARHGAP23 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17G038483 1.2 Ensembl ENCODE 12.3 +65.7 65694 2.1 HDGF PKNOX1 GLIS2 ZNF143 ZNF207 REST TBX21 ZNF610 GLIS1 NBN ARHGAP23 SOCS7 ENSG00000276170 GC17P038481 PIR32449
GH17G038348 1.2 Ensembl ENCODE 11.6 -70.0 -69991 0.6 HDAC1 ELF3 FOXA2 RB1 ARID4B ZNF76 THRB ZSCAN9 RAD21 ZNF766 GPR179 ARHGAP23 PIR56504 GC17P038345
GH17G038350 1.1 ENCODE 11.6 -67.3 -67331 2.7 HDGF PKNOX1 MLX CREB3L1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 GPR179 ARHGAP23 PIR56504 SOCS7
GH17G038486 0.9 ENCODE 12.3 +66.8 66835 0.2 HDGF TBP PKNOX1 BMI1 RAD21 ZNF335 SCRT2 ZNF143 ZNF207 RELB ARHGAP23 SOCS7 GC17P038481 PIR32449
GH17G038447 1.3 ENCODE dbSUPER 8 +32.9 32867 9.4 ATF1 PKNOX1 SIN3A ZNF2 ETS1 ZNF121 GLIS2 ZNF766 ZNF416 ZNF143 ENSG00000276170 ENSG00000266469 MED1 ARHGAP23 PIR59508 PIR56037 GC17M038485 GC17M038463
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ARHGAP23 on UCSC Golden Path with GeneCards custom track

Promoters for ARHGAP23 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000093750 20 201 MAZ MXI1 SP3 BHLHE40 ZBTB8A ZFHX2 GLIS2 POLR2A GLIS1 PATZ1

Genomic Location for ARHGAP23 Gene

Chromosome:
17
Start:
38,419,280 bp from pter
End:
38,512,392 bp from pter
Size:
93,113 bases
Orientation:
Plus strand

Genomic View for ARHGAP23 Gene

Genes around ARHGAP23 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ARHGAP23 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ARHGAP23 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ARHGAP23 Gene

Proteins for ARHGAP23 Gene

  • Protein details for ARHGAP23 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9P227-RHG23_HUMAN
    Recommended name:
    Rho GTPase-activating protein 23
    Protein Accession:
    Q9P227

    Protein attributes for ARHGAP23 Gene

    Size:
    1491 amino acids
    Molecular mass:
    162192 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for ARHGAP23 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ARHGAP23 Gene

Post-translational modifications for ARHGAP23 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for ARHGAP23 Gene

Domains & Families for ARHGAP23 Gene

Protein Domains for ARHGAP23 Gene

Suggested Antigen Peptide Sequences for ARHGAP23 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ARHGAP23: view

No data available for UniProtKB/Swiss-Prot for ARHGAP23 Gene

Function for ARHGAP23 Gene

Molecular function for ARHGAP23 Gene

UniProtKB/Swiss-Prot Function:
GTPase activator for the Rho-type GTPases by converting them to an inactive GDP-bound state.

Gene Ontology (GO) - Molecular Function for ARHGAP23 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005096 GTPase activator activity TAS --
genes like me logo Genes that share ontologies with ARHGAP23: view
genes like me logo Genes that share phenotypes with ARHGAP23: view

Animal Models for ARHGAP23 Gene

MGI Knock Outs for ARHGAP23:

Animal Model Products

CRISPR Products

miRNA for ARHGAP23 Gene

miRTarBase miRNAs that target ARHGAP23

Inhibitory RNA Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for ARHGAP23 Gene

Localization for ARHGAP23 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ARHGAP23 gene
Compartment Confidence
extracellular 5
cytosol 5
nucleus 4
plasma membrane 2
golgi apparatus 1

Gene Ontology (GO) - Cellular Components for ARHGAP23 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005829 cytosol TAS --
GO:0070062 extracellular exosome IDA 19199708
genes like me logo Genes that share ontologies with ARHGAP23: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for ARHGAP23 Gene

Pathways & Interactions for ARHGAP23 Gene

genes like me logo Genes that share pathways with ARHGAP23: view

Pathways by source for ARHGAP23 Gene

3 Reactome pathways for ARHGAP23 Gene

Interacting Proteins for ARHGAP23 Gene

Selected Interacting proteins: Q9P227-RHG23_HUMAN for ARHGAP23 Gene via IID

Gene Ontology (GO) - Biological Process for ARHGAP23 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007165 signal transduction IEA --
GO:0043547 positive regulation of GTPase activity IBA --
GO:0051056 regulation of small GTPase mediated signal transduction TAS --
genes like me logo Genes that share ontologies with ARHGAP23: view

No data available for SIGNOR curated interactions for ARHGAP23 Gene

Drugs & Compounds for ARHGAP23 Gene

No Compound Related Data Available

Transcripts for ARHGAP23 Gene

mRNA/cDNA for ARHGAP23 Gene

(12) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(5) Selected AceView cDNA sequences:
(12) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ARHGAP23 Gene

Rho GTPase activating protein 23:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Alternative Splicing Database (ASD) splice patterns (SP) for ARHGAP23 Gene

No ASD Table

Relevant External Links for ARHGAP23 Gene

GeneLoc Exon Structure for
ARHGAP23
ECgene alternative splicing isoforms for
ARHGAP23

Expression for ARHGAP23 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ARHGAP23 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for ARHGAP23 Gene

This gene is overexpressed in Frontal cortex (15.1), Testis (10.5), Retina (10.2), and Fetal testis (9.7).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for ARHGAP23 Gene



Protein tissue co-expression partners for ARHGAP23 Gene

NURSA nuclear receptor signaling pathways regulating expression of ARHGAP23 Gene:

ARHGAP23

SOURCE GeneReport for Unigene cluster for ARHGAP23 Gene:

Hs.374446

mRNA Expression by UniProt/SwissProt for ARHGAP23 Gene:

Q9P227-RHG23_HUMAN
Tissue specificity: Expressed in placenta, prostate, hippocampus and brain medulla. Also expressed in brain tumor, salivary gland tumor, head and neck tumor.

Evidence on tissue expression from TISSUES for ARHGAP23 Gene

  • Nervous system(4.6)
  • Liver(4.1)
genes like me logo Genes that share expression patterns with ARHGAP23: view

Primer Products

No data available for mRNA differential expression in normal tissues and Phenotype-based relationships between genes and organs from Gene ORGANizer for ARHGAP23 Gene

Orthologs for ARHGAP23 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ARHGAP23 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ARHGAP23 34
  • 97.32 (n)
dog
(Canis familiaris)
Mammalia ARHGAP23 34
  • 91.92 (n)
cow
(Bos Taurus)
Mammalia ARHGAP23 34
  • 91.69 (n)
mouse
(Mus musculus)
Mammalia Arhgap23 34 16
  • 88.78 (n)
rat
(Rattus norvegicus)
Mammalia Arhgap23 34
  • 88.44 (n)
chicken
(Gallus gallus)
Aves LOC101750894 34
  • 78.79 (n)
tropical clawed frog
(Silurana tropicalis)
Amphibia arhgap23 34
  • 64.11 (n)
zebrafish
(Danio rerio)
Actinopterygii LOC100006233 34
  • 60.29 (n)
Species where no ortholog for ARHGAP23 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ARHGAP23 Gene

ENSEMBL:
Gene Tree for ARHGAP23 (if available)
TreeFam:
Gene Tree for ARHGAP23 (if available)

Paralogs for ARHGAP23 Gene

Variants for ARHGAP23 Gene

Sequence variations from dbSNP and Humsavar for ARHGAP23 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1000003840 -- 38,446,317(+) ACCCC(A/G)CCTGG intron-variant
rs1000035807 -- 38,428,991(+) GGTTC(C/T)CGGAG intron-variant
rs1000119538 -- 38,485,790(+) TGTCT(C/T)CCCAC intron-variant
rs1000131812 -- 38,480,941(+) CAGCC(C/T)GGGTA intron-variant
rs1000176129 -- 38,419,556(+) GGAGG(A/G)ATGGG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ARHGAP23 Gene

Variant ID Type Subtype PubMed ID
esv23483 CNV gain+loss 19812545
esv2758688 CNV gain+loss 17122850
esv27695 CNV gain 19812545
nsv1118072 CNV deletion 24896259
nsv1126455 CNV deletion 24896259
nsv1146669 OTHER inversion 26484159
nsv428341 CNV gain+loss 18775914
nsv469701 CNV loss 16826518
nsv833436 CNV loss 17160897
nsv953892 CNV deletion 24416366
nsv9549 CNV gain 18304495
nsv960483 CNV duplication 23825009

Variation tolerance for ARHGAP23 Gene

Gene Damage Index Score: 4.87; 67.41% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ARHGAP23 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ARHGAP23

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ARHGAP23 Gene

Disorders for ARHGAP23 Gene

Relevant External Links for ARHGAP23

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ARHGAP23

No disorders were found for ARHGAP23 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ARHGAP23 Gene

Publications for ARHGAP23 Gene

  1. Identification and characterization of human ARHGAP23 gene in silico. (PMID: 15254754) Katoh M. … Katoh M. (Int. J. Oncol. 2004) 2 3 4 22 64
  2. Prediction of the coding sequences of unidentified human genes. XVII. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PMID: 10819331) Nagase T. … Ohara O. (DNA Res. 2000) 2 3 4 64
  3. DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage. (PMID: 16625196) Zody M.C. … Nusbaum C. (Nature 2006) 3 4 64
  4. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3 64
  5. E-cadherin interactome complexity and robustness resolved by quantitative proteomics. (PMID: 25468996) Guo Z. … Zaidel-Bar R. (Sci Signal 2014) 3 64

Products for ARHGAP23 Gene

Sources for ARHGAP23 Gene

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