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Aliases for ARHGAP22-IT1 Gene

Subcategory (RNA class) for ARHGAP22-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ARHGAP22-IT1 Gene

  • ARHGAP22 Intronic Transcript 1 2 3 5
  • ARHGAP22 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for ARHGAP22-IT1 Gene

Previous GeneCards Identifiers for ARHGAP22-IT1 Gene

  • GC10M049719

Summaries for ARHGAP22-IT1 Gene

GeneCards Summary for ARHGAP22-IT1 Gene

ARHGAP22-IT1 (ARHGAP22 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ARHGAP22-IT1 Gene

Genomics for ARHGAP22-IT1 Gene

Regulatory Elements for ARHGAP22-IT1 Gene

Enhancers for ARHGAP22-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10F048503 0.2 ENCODE 6.3 +7.4 7433 1.7 BCOR EGR2 ARHGAP22-IT1 ENSG00000279822
GH10F048517 1.3 Ensembl ENCODE 4.9 -7.2 -7168 2.5 L3MBTL2 MAX MNT POLR2A MYC MGA TRIM28 SPI1 ARHGAP22 ARHGAP22-IT1 GC10M048509 GC10M048541
GH10F048525 1.1 Ensembl ENCODE 4.7 -15.3 -15333 2.3 MCM5 YBX1 DPF2 MCM7 CTBP1 JUND GATA3 ZNF366 FOS KDM1A MAPK8 ARHGAP22-IT1 GC10M048509 GC10M048541
GH10F048508 1.2 Ensembl ENCODE 0.8 +2.6 2589 1.6 SCRT1 GATA3 IKZF1 ZNF341 SCRT2 NFE2 TCF7L2 SPI1 ARHGAP22-IT1 ENSG00000279822
GH10F048506 0.7 ENCODE 0.8 +4.9 4897 0.2 ELF3 HDGF HDAC1 ATF1 CBX3 ARNT ARID4B RAD21 CHAMP1 CBX5 ARHGAP22-IT1 ENSG00000279822
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around ARHGAP22-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for ARHGAP22-IT1 Gene

Chromosome:
10
Start:
48,510,525 bp from pter
End:
48,511,589 bp from pter
Size:
1,065 bases
Orientation:
Minus strand

Genomic View for ARHGAP22-IT1 Gene

Genes around ARHGAP22-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ARHGAP22-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ARHGAP22-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ARHGAP22-IT1 Gene

Proteins for ARHGAP22-IT1 Gene

Post-translational modifications for ARHGAP22-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ARHGAP22-IT1 Gene

Domains & Families for ARHGAP22-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ARHGAP22-IT1 Gene

Function for ARHGAP22-IT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ARHGAP22-IT1 Gene

Localization for ARHGAP22-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ARHGAP22-IT1 Gene

Pathways & Interactions for ARHGAP22-IT1 Gene

SuperPathways for ARHGAP22-IT1 Gene

No Data Available

Interacting Proteins for ARHGAP22-IT1 Gene

Gene Ontology (GO) - Biological Process for ARHGAP22-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ARHGAP22-IT1 Gene

Transcripts for ARHGAP22-IT1 Gene

mRNA/cDNA for ARHGAP22-IT1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ARHGAP22-IT1 Gene

ARHGAP22 intronic transcript 1 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ARHGAP22-IT1 Gene

No ASD Table

Relevant External Links for ARHGAP22-IT1 Gene

GeneLoc Exon Structure for
ARHGAP22-IT1
ECgene alternative splicing isoforms for
ARHGAP22-IT1

Expression for ARHGAP22-IT1 Gene

mRNA expression in normal human tissues for ARHGAP22-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for ARHGAP22-IT1 Gene

This gene is overexpressed in Testis (x50.7).

SOURCE GeneReport for Unigene cluster for ARHGAP22-IT1 Gene:

Hs.667964
genes like me logo Genes that share expression patterns with ARHGAP22-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for ARHGAP22-IT1 Gene

Orthologs for ARHGAP22-IT1 Gene

Evolution for ARHGAP22-IT1 Gene

ENSEMBL:
Gene Tree for ARHGAP22-IT1 (if available)
TreeFam:
Gene Tree for ARHGAP22-IT1 (if available)

No data available for Orthologs for ARHGAP22-IT1 Gene

Paralogs for ARHGAP22-IT1 Gene

No data available for Paralogs for ARHGAP22-IT1 Gene

Variants for ARHGAP22-IT1 Gene

Relevant External Links for ARHGAP22-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ARHGAP22-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ARHGAP22-IT1 Gene

Disorders for ARHGAP22-IT1 Gene

Relevant External Links for ARHGAP22-IT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ARHGAP22-IT1

No disorders were found for ARHGAP22-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ARHGAP22-IT1 Gene

Publications for ARHGAP22-IT1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for ARHGAP22-IT1 Gene

Sources for ARHGAP22-IT1 Gene

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