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Aliases for ARHGAP22-IT1 Gene

Subcategory (RNA class) for ARHGAP22-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ARHGAP22-IT1 Gene

  • ARHGAP22 Intronic Transcript 1 2 3 5
  • ARHGAP22 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for ARHGAP22-IT1 Gene

Previous GeneCards Identifiers for ARHGAP22-IT1 Gene

  • GC10M049719

Summaries for ARHGAP22-IT1 Gene

GeneCards Summary for ARHGAP22-IT1 Gene

ARHGAP22-IT1 (ARHGAP22 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ARHGAP22-IT1 Gene

Genomics for ARHGAP22-IT1 Gene

Regulatory Elements for ARHGAP22-IT1 Gene

Enhancers for ARHGAP22-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10G048517 1.1 Ensembl ENCODE dbSUPER 4.9 -6.6 -6572 1.3 L3MBTL2 MAX MNT FOXA1 MYC TRIM28 MGA SPI1 ARHGAP22 ARHGAP22-IT1 GC10M048509 GC10M048541
GH10G048525 1 Ensembl ENCODE 4.7 -15.3 -15333 2.3 MCM5 YBX1 DPF2 ZNF394 FOXA1 FOXM1 MCM7 GATA3 JUND CTBP1 MAPK8 ARHGAP22-IT1 GC10M048541 GC10M048509
GH10G048503 0.7 ENCODE dbSUPER 6.3 +7.4 7433 1.7 BCOR NFIC EGR2 ARHGAP22-IT1 ENSG00000279822
GH10G048506 1.2 ENCODE dbSUPER 0.7 +4.9 4897 0.2 HDAC1 ELF3 HDGF ATF1 CBX3 RB1 ARNT ARID4B ZBTB7B RAD21 ARHGAP22-IT1 ENSG00000279822
GH10G048505 1.4 Ensembl ENCODE dbSUPER 0.4 +5.6 5630 1.2 HDAC1 ELF3 HDGF ATF1 CBX3 RB1 ARNT ARID4B ZBTB7B RAD21 ARHGAP22-IT1 ENSG00000279822
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ARHGAP22-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for ARHGAP22-IT1 Gene

Chromosome:
10
Start:
48,510,525 bp from pter
End:
48,511,589 bp from pter
Size:
1,065 bases
Orientation:
Minus strand

Genomic View for ARHGAP22-IT1 Gene

Genes around ARHGAP22-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ARHGAP22-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ARHGAP22-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ARHGAP22-IT1 Gene

Proteins for ARHGAP22-IT1 Gene

Post-translational modifications for ARHGAP22-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ARHGAP22-IT1 Gene

Domains & Families for ARHGAP22-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ARHGAP22-IT1 Gene

Function for ARHGAP22-IT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ARHGAP22-IT1 Gene

Localization for ARHGAP22-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ARHGAP22-IT1 Gene

Pathways & Interactions for ARHGAP22-IT1 Gene

SuperPathways for ARHGAP22-IT1 Gene

No Data Available

Interacting Proteins for ARHGAP22-IT1 Gene

Gene Ontology (GO) - Biological Process for ARHGAP22-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ARHGAP22-IT1 Gene

Drugs & Compounds for ARHGAP22-IT1 Gene

No Compound Related Data Available

Transcripts for ARHGAP22-IT1 Gene

mRNA/cDNA for ARHGAP22-IT1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ARHGAP22-IT1 Gene

ARHGAP22 intronic transcript 1 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ARHGAP22-IT1 Gene

No ASD Table

Relevant External Links for ARHGAP22-IT1 Gene

GeneLoc Exon Structure for
ARHGAP22-IT1
ECgene alternative splicing isoforms for
ARHGAP22-IT1

Expression for ARHGAP22-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ARHGAP22-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for ARHGAP22-IT1 Gene

This gene is overexpressed in Testis (x50.7).

SOURCE GeneReport for Unigene cluster for ARHGAP22-IT1 Gene:

Hs.667964
genes like me logo Genes that share expression patterns with ARHGAP22-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ARHGAP22-IT1 Gene

Orthologs for ARHGAP22-IT1 Gene

Evolution for ARHGAP22-IT1 Gene

ENSEMBL:
Gene Tree for ARHGAP22-IT1 (if available)
TreeFam:
Gene Tree for ARHGAP22-IT1 (if available)

No data available for Orthologs for ARHGAP22-IT1 Gene

Paralogs for ARHGAP22-IT1 Gene

No data available for Paralogs for ARHGAP22-IT1 Gene

Variants for ARHGAP22-IT1 Gene

Relevant External Links for ARHGAP22-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ARHGAP22-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ARHGAP22-IT1 Gene

Disorders for ARHGAP22-IT1 Gene

Relevant External Links for ARHGAP22-IT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ARHGAP22-IT1

No disorders were found for ARHGAP22-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ARHGAP22-IT1 Gene

Publications for ARHGAP22-IT1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for ARHGAP22-IT1 Gene

Sources for ARHGAP22-IT1 Gene

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