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Aliases & Descriptions for RHOC
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases ARH9 2 , 3 ARHC 2 , 3 H9 2 , 3 MGC1448 2 MGC61427 2 OTTHUMP00000013675 2 OTTHUMP00000013676 2 OTTHUMP00000013802 2 OTTHUMP00000013805 2 OTTHUMP00000013807 2 OTTHUMP00000013809 2 RHOH9 2 RhoC 1
Descriptions RAS-related homolog 9 2 Rho-related GTP-binding protein RhoC 2 oncogene RHO H9 2 ras homolog gene family, member C 2 rhoC GTPase 2 small GTP binding protein RhoC 2
Search outside databases for aliases for RHOC genePrevious GC identifer: GC01M112544
Summaries for RHOC (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for RHOC : This gene encodes a member of the Rho family of small GTPases, which cycle between inactiveGDP-bound and active GTP-bound states and function as molecular switches in signal transductioncascades. Rho proteins promote reorganization of the actin cytoskeleton and regulate cell shape,attachment, and motility. The protein encoded by this gene is prenylated at its C-terminus, andlocalizes to the cytoplasm and plasma membrane. It is thought to be important in cell locomotion.Overexpression of this gene is associated with tumor cell proliferation and metastasis. Multiplealternatively spliced variants, encoding the same protein, have been identified. [provided byRefSeq] UniProtKB/Swiss-Prot: RHOC_HUMAN, P08134 Function : Regulates a signal transduction pathway linking plasma membrane receptors to the assemblyof focal adhesions and actin stress fibers
Gene Wiki entry for RHOC (RhoC)
Genomic Location for RHOC
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the RHOC gene Entrez Gene cytogenetic band: 1p13.1 Ensembl cytogenetic band: 1p13.2 HGNC cytogenetic band: 1p13.1 RHOC Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 1 GeneLoc Exon Structure
GeneLoc location for GC01M112955:
(about GC identifiers )
Start:
113,045,251 bp from pter
End:
113,051,548 bp from pter
Size:
6,298 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000001.9 NT_019273.18 Proteins for RHOC
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: RHOC_HUMAN, P08134 (See
protein sequence )Recommended Name: Rho-related GTP-binding protein RhoC precursor Size : 193 amino acids; 22006 Da
Subunit : Interacts with DIAPH1, ROCK1, ROCK2 and RTKN. Interacts with AKAP13
Subcellular location : Cell membrane; Lipid-anchor; Cytoplasmic side (Potential)
PDB structures from and Proteopedia : 1Z2C (3D)
 2GCN (3D)
 2GCO (3D)
 
Secondary accessions : Q6ICN3
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (3 alternative transcripts):
NP_001036143.1 NP_001036144.1 NP_786886.1 ENSEMBL proteins: ENSP00000358650 ENSP00000358656 ENSP00000358647 ENSP00000345236 ENSP00000285735 ENSP00000358652 ENSP00000358651 ENSP00000358646 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 2 Gene Ontology (GO) cellular component terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0005622 intracellular
IEA -- GO:0005886 plasma membrane
IEA --
About this table Antibodies for RHOC: Assays for RHOC:
Protein
Domains/ Families for RHOC(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P08134 ProtoNet protein and cluster: P08134
2 Blocks protein families : IPB001806 Transforming protein P21 RAS signature IPB003578 Ras small GTPase UniProtKB/Swiss-Prot: RHOC_HUMAN, P08134 Similarity : Belongs to the small GTPase superfamily. Rho family
Gene Function for RHOC
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_175744 Applied Biosystems Silencer ® siRNAs for RHOC Sigma-Aldrich siRNA for RHOC Sigma-Aldrich shRNA for RHOC Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_001042678                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_001042678                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_001042678  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001042679 UniProtKB/Swiss-Prot: RHOC_HUMAN, P08134 Function : Regulates a signal transduction pathway linking plasma membrane receptors to the assemblyof focal adhesions and actin stress fibers
3 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Rhoc) :5 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for RHOC
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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5/11 Sigma-Aldrich "Your Favorite Gene" Pathways for RHOC (Your Favorite Gene powered by Ingenuity) (see all 11
) Gene Network CentralTM Interacting Genes and Proteins Network for RHOC 5/139 Interacting proteins for RHOC (P08134 1 , 2 ENSP00000358647 3 ) via UniProtKB, MINT, and/or STRING (see all 139
)Interactant Interaction Details GeneCard External ID(s) ARHGDIA P52565 1 , ENSP00000269321 3 EBI-747589, EBI-712693 STRING (score=.999 ) CNKSR1 Q969H4 1 , 2 , ENSP00000363371 3 EBI-747589, EBI-741671 MINT-56517 EBI-747589, EBI-741671 MINT-56517 STRING (score=.845 ) VHL P40337 1 EBI-747589, EBI-301246 CNKSR1 Q969H4 1 , 2 , ENSP00000363371 3 EBI-747589, EBI-741671 MINT-56517 EBI-747589, EBI-741671 MINT-56517 STRING (score=.845 ) CNKSR1 Q969H4 1 , 2 , ENSP00000363371 3 EBI-747589, EBI-741671 MINT-56517 EBI-747589, EBI-741671 MINT-56517 STRING (score=.845 )
About this table 3 Gene Ontology (GO) biological process terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0007264 small GTPase mediated signal transduction
IEA -- GO:0043123 positive regulation of I-kappaB kinase/NF-kappaB cascade
IMP 12761501 GO:0045665 negative regulation of neuron differentiation
IEA --
About this table
Drugs & Compounds for RHOC (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Enzo Life Sciences drugs & compounds for RHOC
Browse Tocris compounds for RHOC 1 Novoseek chemical compound relationship for RHOC gene
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
gtp
32.95
4
18377644 (2)
About this table
Transcripts for RHOC(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
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OriGene ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_175744 Sigma-Aldrich siRNA for RHOC Sigma-Aldrich shRNA for RHOC Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001042678 NM_001042679 NM_175744
REFSEQ mRNAs for RHOC gene (3 alternative transcripts): NM_001042678.1 NM_001042679.1 NM_175744.4
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001042678 NM_001042679 NM_175744
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_001042678                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_001042678                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_001042678  
Additional cDNA sequence: AF085893.1
24/46 DOTS entries (see all 46
): DT.219329 DT.92471967 DT.99926463 DT.101986475 DT.95102696 DT.100673039 DT.121433304 DT.121433252 DT.95285439 DT.428367 DT.87079300 DT.100673034 DT.100673046 DT.121433186 DT.121433212 DT.100759962 DT.121433215 DT.121433298 DT.92471807 DT.86851430 DT.95091621 DT.95103840 DT.99926455 DT.100716118
24/712 AceView cDNA sequences (see all 712
):CR601446 BC064628 CB131033 BQ920836 BQ648340 CB108173 BM841965 BC073828 BM821555 AI955324 CB216543 BU628835 CA489413 BU737640 BU171367 BM460704 BQ685503 BU521068 CR614305 BI835582 AI685637 BM854662 BE407130 CR613350
highest scoring ESTs for RHOC :AK094474 AL048554 AU099800 AW891279 BC007245 BC009177 BC052808 BE713147 BE713152 BE713171
Unigene Clusters for RHOC: Ras homolog gene family, member C Hs.502659 [show with all ESTs ] , Hs.658289 [show with all ESTs ] Unigene Representative Sequences: AK094474 , BI000596 GeneLoc Exon Structure 5/11 Alternative Splicing Database (ASD) splice patterns (SP) for RHOC (see all 11
) ExUns: 1a · 1b · 1c ^ 2a · 2b · 2c ^ 3a · 3b · 3c ^ 4 ^ 5a · 5b ^ 6 ^ 7 ^ 8 ^ 9 ^ 10a · 10b ^ 11a · 11b · 11c · 11d · 11e · 11f · 11g · 11h SP1 :       -   -   -   -     -   -   -   -   -     -                         SP2 :       -   -   -       -   -   -   -   -     -                         SP3 :           -   -     -   -   -   -   -     -                         SP4 :             -     -   -   -   -   -     -                         SP5 :                 -   -   -   -   -                            
About this scheme ECgene alternative splicing isoforms for RHOC 8 Ensembl transcripts including schematic representations : ENST00000369636
ENST00000369642
ENST00000369633
ENST00000339083
ENST00000285735
ENST00000369638
ENST00000369637
ENST00000369632
Expression for RHOC
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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RHOC expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for RHOC 1 / 2 / 3
5 probe-sets matching RHOC gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TAGTCAACAGSOURCE GeneReport for Unigene clusters: Hs.502659 Hs.658289 Expression variation in blood from EXPOLDB for RHOC
Orthologs for RHOC
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for RHOC gene from 5/12 species (see all 12
)
About this table Species with no ortholog for RHOC ENSEMBL Gene Tree for RHOC Paralogs for RHOC (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for RHOC gene RHOB 2 RHOA 2
SNPs/Variants for RHOC (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for RHOC (up to first 250kb)
Disorders & Mutations for RHOC
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 165380 10/16 Novoseek disease relationships for RHOC gene (see all 16
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
inflammatory breast cancer
84.29
2
16187229 (1), 12479217 (1)
metastasis
56.34
63
18980974 (7), 18794150 (4), 17549441 (4), 16899593 (3) (see all 21 )
breast cancer
42.01
19
16187229 (5), 18478927 (5), 12939257 (1), 7713753 (1) (see all 8 )
tumors
39.90
68
18794150 (6), 12855641 (5), 12970882 (3), 11839578 (3) (see all 14 )
breast diseases
36.49
1
11839578 (1)
cancer
35.86
8
15604264 (1), 12479217 (1), 17549441 (1), 16470169 (1) (see all 6 )
primary tumor
31.46
6
16899593 (2), 15312362 (2), 12808121 (1), 15867248 (1)
breast carcinoma
28.83
4
11839578 (2), 15574779 (2)
hepatocellular carcinoma
24.89
9
12970882 (2), 15312362 (2), 17265125 (2), 15150600 (1) (see all 5 )
carcinoma
23.02
12
11839578 (3), 16187229 (2), 16899593 (2), 12808121 (2) (see all 5 )
About this table Human Genome Epidemiology Navigator: RHOC (1 document)
Medical News for RHOC (Possibly Related Articles in
Doctor's Guide )
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--
Publications for RHOC (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/103 PubMed articles for RHOC gene (see all 103
): Coding sequence of human rho cDNAs clone 6 and clone 9. (PubMed id 3283705) 2, 3, 4 Chardin P.... Tavitian A. (1988) The p160 RhoA-binding kinase ROK alpha is a member of a kinase family and is involved in the reorganization of the cytoskeleton. (PubMed id 8816443) 1, 3, 4 Leung T.... Lim L. (1996) The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414) 3, 4 Gregory S.G.... Bentley D.R. (2006) Structural and mechanistic insights into the interaction between Rho and mammalian Dia. (PubMed id 15864301) 3, 4 Rose R....Wittinghofer A. (2005) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) AKAP-Lbc anchors protein kinase A and nucleates Galpha 12-selective Rho-mediated stress fiber formation. (PubMed id 11546812) 3, 4 Diviani D.... Scott J.D. (2001) RhoC is essential for the metastasis of gastric cancer. (PubMed id 17549441) 1, 3 Liu N....Fan D. (2007) Inhibition of invasion and metastasis of hepatocellular carcinoma cells via targeting RhoC in vitro and in vivo. (PubMed id 18980974) 1, 3 Wang W....Yang L. (2008) RhoC promotes metastasis via activation of the Pyk2 pathway in prostate cancer. (PubMed id 18794150) 1, 3 Iiizumi M....Watabe K. (2008) Clinical and prognostic significance of RhoA and RhoC gene expression in esophageal squamous cell carcinoma. (PubMed id 17896152) 1, 3 Faried A....Kuwano H. (2007)
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Genome Databases showing RHOC
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing RHOC
(According to HUGE )
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Specialized Databases showing RHOC (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for RHOC (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for RHOC:
Antibodies & Assays for RHOC  
Recombinant Proteins (Rho , RHOC , Rho A + B + C , Pan Rho + RAC (1,2,3) + CDC42 ) Antibodies (Rho , RHOC , Rho A + B + C , Pan Rho + RAC (1,2,3) + CDC42 )
Search Tocris compounds for RHOC
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009