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Aliases & Descriptions for RHOB
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| ARH6 2, 3 | | ARHB 2, 3 | | H6 3 | | MST081 1, 2 | | MSTP081 2 | | RHOH6 1, 2 | | RhoB 1 |
| | | Descriptions |
|---|
| Aplysia RAS-related homolog 6 2 | | oncogene RHO H6 2 | | ras homolog gene family, member B 2 |
|
| | Search outside databases for aliases for RHOB genePrevious GC identifers: GC02P020632 GC02P020568 |
Summaries for RHOB(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| UniProtKB/Swiss-Prot: RHOB_HUMAN, P62745Function: Mediates apoptosis in neoplastically transformed cells after DNA damage. Not essential for development but affects cell adhesion and growth factor signaling in transformed cells. Plays a negative role in tumorigenesis as deletion causes tumor formation. Involved in intracellular protein trafficking of a number of proteins. Targets PKN1 to endosomes and is involved in trafficking of the EGF receptor from late endosomes to lysosomes. Also required for stability and nuclear trafficking of AKT1/AKT which promotes endothelial cell survival during vascular developmentGene Wiki entry for RHOB |
Genomic Location for RHOB
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the RHOB gene 
Entrez Gene cytogenetic band: 2p24 Ensembl cytogenetic band: 2p24.1 HGNC cytogenetic band: 2p24RHOB Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 2 GeneLoc Exon Structure GeneLoc location for GC02P020510:
(about GC identifiers)
Start:
|
20,510,316 bp from pter |
End:
|
20,512,682 bp from pter |
Size:
|
2,367 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000002.10 NT_015926.14
| Proteins for RHOB
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: RHOB_HUMAN, P62745 (See
protein sequence)Recommended Name: Rho-related GTP-binding protein RhoB precursor Size: 196 amino acids; 22123 Da
Subunit: Binds ROCK1 and ROCK2. Also binds PKN1/PRK1. Interacts with ARGGEF3, RTKN and AKAP13
Subcellular location: Late endosome membrane; Lipid-anchor. Cell membrane; Lipid-anchor. Nucleus. Note=Late endosomal membrane (geranylgeranylated form). Plasma membrane (farnesylated form). Also detected at the nuclear margin and in the nucleus
Miscellaneous: RHOB is one of the targets of farnesyltransferase inhibitors which are currently under investigation as cancer therapeutics. These elevate the levels of geranylgeranylated RHOB and cause mislocalization, leading to apoptosis and antineoplastic effects
PDB structures from and Proteopedia :2FV8 (3D)
 
Secondary accessions: P01121 Q5U0H6 Q7RTN5 Q7RTR9 Q9CUV7Post-translational modifications:
Prenylation specifies the subcellular location of RHOB. The farnesylated form is localized to the plasma membrane while the geranylgeranylated form is localized to the endosome1
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_004031.1
ENSEMBL proteins: ENSP00000384023 ENSP00000272233
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
5/7 Gene Ontology (GO) cellular component terms (links to tree view) (see all 7
): About this table
Antibodies for RHOB: Assays for RHOB: | Protein
Domains/ Families for RHOB(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P62745
ProtoNet protein and cluster: P62745 UniProtKB/Swiss-Prot: RHOB_HUMAN, P62745Similarity: Belongs to the small GTPase superfamily. Rho family | Gene Function for RHOB
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_004040
Applied Biosystems Silencer® siRNAs for RHOB
Sigma-Aldrich siRNA and siRNA Panels for RHOB  Sigma-Aldrich shRNA Panels and shRNA for RHOB  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_004040                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_004040                                  untagged cDNA clone in CMV expression vector: NM_004040 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_004040
UniProtKB/Swiss-Prot: RHOB_HUMAN, P62745Function: Mediates apoptosis in neoplastically transformed cells after DNA damage. Not essential for development but affects cell adhesion and growth factor signaling in transformed cells. Plays a negative role in tumorigenesis as deletion causes tumor formation. Involved in intracellular protein trafficking of a number of proteins. Targets PKN1 to endosomes and is involved in trafficking of the EGF receptor from late endosomes to lysosomes. Also required for stability and nuclear trafficking of AKT1/AKT which promotes endothelial cell survival during vascular development6 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Rhob):
5 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for RHOB
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
5/11 Sigma-Aldrich "Your Favorite Gene" Pathways for RHOB (Your Favorite Gene powered by Ingenuity) (see all 11
) 
Gene Network CentralTM Interacting Genes and Proteins Network for RHOB 
5/149 Interacting proteins for RHOB (ENSP000002722333 P627452) via UniProtKB, MINT, and/or STRING (see all 149
)About this table
5/10 Gene Ontology (GO) biological process terms (links to tree view) (see all 10
): About this table
|
Drugs & Compounds for RHOB(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|  |
Enzo Life Sciences drugs & compounds for RHOB |
Browse Tocris compounds for RHOB 8 Novoseek chemical compound relationships for RHOB gene
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| geranylgeranyl pyrophosphate |
48.48 |
6 |
12427032 (2), 12384510 (1) |
| mevalonate |
47.12 |
7 |
11788600 (2), 12384510 (2), 12427032 (2) |
| gdp |
37.03 |
6 |
8939998 (3) |
| gtp |
34.94 |
15 |
8939998 (3), 18377644 (3), 17198702 (1), 11918088 (1) |
| methionine |
9.49 |
1 |
16170025 (1) |
| threonine |
8.06 |
2 |
9478917 (1), 18590726 (1) |
| cholesterol |
0.00 |
3 |
18388257 (1), 12384510 (1), 11162504 (1) |
| glycogen |
0.00 |
2 |
16247449 (1), 16278215 (1) |
About this table
|
Transcripts for RHOB(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_004040
Sigma-Aldrich siRNA and siRNA Panels for RHOB  Sigma-Aldrich shRNA Panels and shRNA for RHOB  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_004040 REFSEQ mRNAs for RHOB gene: NM_004040.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_004040               OriGene GFP tagged cDNA clone in CMV expression vector: NM_004040                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_004040                                  untagged cDNA clone in CMV expression vector: NM_004040  Additional cDNA sequence: AF171089.1 AF498971.1 AK124398.1 AK297495.1 AK309991.1 AK310813.1 AK312487.1 BC062781.1 BC066954.1 BT019546.1 BT019547.1 CR542272.1 CR626079.1 M12174.1 X06820.1 20 DOTS entries: DT.92339462 DT.92033160 DT.92327084 DT.120991656 DT.120991663 DT.91778836 DT.100798162 DT.95377224 DT.220260 DT.91778826 DT.100798160 DT.91778839 DT.100798158 DT.87018075 DT.91778835 DT.91852109 DT.95376747 DT.95377285 DT.100798169 DT.40115663 24/864 AceView cDNA sequences (see all 864
):AI632215 BE463681 AW103688 H88963 BF732567 AI433662 AI076237 AI871029 AI189876 AW169428 BM921603 AI220416 AW052113 CR542272 AI521893 BQ025501 CD677191 BU950449 AI082782 AI964043 AI417030 AI480356 BF063088 BF196534
highest scoring ESTs for RHOB:M12174 AA024540 AA035127 AA056220 AA056221 AA128528 AA129963 AA176140 AA176239 AA187776 Unigene Cluster for RHOB: Ras homolog gene family, member B Hs.502876 [show with all ESTs]Unigene Representative Sequence: NM_004040
GeneLoc Exon Structure
2 Ensembl transcripts including schematic representations: ENST00000405629
ENST00000272233
|
Expression for RHOB
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| RHOB expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for RHOB
1 / 2 / 3 6 probe-sets matching RHOB gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: CACACAGTTT
SOURCE GeneReport for Unigene cluster: Hs.502876
Expression variation in blood from EXPOLDB for RHOB |
Orthologs for RHOB
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for RHOB gene from 5/8 species (see all 8
)
About this table Species with no ortholog for RHOB
ENSEMBL Gene Tree for RHOB | Paralogs for RHOB(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for RHOB gene
- RHOA2 RHOC2
|
SNPs/Variants for RHOB(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for RHOB (up to first 250kb)
|
Disorders & Mutations for RHOB
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 165370
10 Novoseek disease relationships for RHOB gene
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| tumors |
29.83 |
26 |
15102679 (4), 18340357 (3), 11918088 (3), 18047684 (2) (see all 14) |
| cancer |
27.84 |
11 |
15102679 (2), 14647415 (2), 16909123 (2), 16247449 (1) (see all 6) |
| neoplastic transformation |
21.57 |
1 |
12706111 (1) |
| cancer lung |
19.87 |
19 |
15102679 (5), 18047684 (4), 11641777 (1), 17096327 (1) (see all 5) |
| nsclc |
18.31 |
13 |
17096327 (6) |
| ovarian cancer |
14.33 |
5 |
16796923 (3), 18340357 (2) |
| metastasis |
11.48 |
2 |
12939257 (1), 16909123 (1) |
| adenocarcinoma |
6.90 |
4 |
17096327 (2), 15102679 (1) |
| necrosis |
0.00 |
1 |
11062238 (1) |
| carcinoma |
0.00 |
1 |
15102679 (1) |
About this table
Human Gene Mutation Database: RHOB Human Genome Epidemiology Navigator: RHOB (2 documents)
|
Medical News for RHOB(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for RHOB (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/147 PubMed articles for RHOB gene (see all 147
):- Coding sequence of human rho cDNAs clone 6 and clone 9. (PubMed id 3283705)2, 3, 4 Chardin P.... Tavitian A. (1988)
- RhoB protects human keratinocytes from UVB-induced apoptosis through epidermal growth factor receptor signaling. (PubMed id 16278215)1, 2, 3 Canguilhem B....Favre G. (2005)
- XPLN, a guanine nucleotide exchange factor for RhoA and RhoB, but not RhoC. (PubMed id 12221096)1, 3, 4 Arthur W.T.... Wennerberg K. (2002)
- CAAX geranylgeranyl transferase transfers farnesyl as efficiently as geranylgeranyl to RhoB. (PubMed id 7713879)1, 3, 4 Armstrong S.A.... Brown M.S. (1995)
- PRK1 is targeted to endosomes by the small GTPase, RhoB. (PubMed id 9478917)1, 3, 4 Mellor H.... Parker P.J. (1998)
- Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PubMed id 15815621)3, 4 Hillier L.W....Wilson R.K. (2005)
- Farnesyltransferase inhibitors disrupt EGF receptor traffic through modulation of the RhoB GTPase. (PubMed id 15226397)3, 4 Wherlock M.... Mellor H. (2004)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- AKAP-Lbc anchors protein kinase A and nucleates Galpha 12-selective Rho-mediated stress fiber formation. (PubMed id 11546812)3, 4 Diviani D.... Scott J.D. (2001)
- Regulation of epidermal growth factor receptor traffic by the small GTPase rhoB. (PubMed id 10508588)3, 4 Gampel A.... Mellor H. (1999)
|
Search for RHOB
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing RHOB
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing RHOB
(According to HUGE)
About This Section
| -- |
Specialized Databases showing RHOB(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for RHOB(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for RHOB:

 | |
 | | | | |
|
 |  |  |
| Antibodies & Assays for RHOB  |
| | Recombinant Proteins (RHOB, Rho, Rho A + B + C, Pan Rho + RAC (1,2,3) + CDC42) | | Antibodies (RHOB, Rho, Rho A + B + C, Pan Rho + RAC (1,2,3) + CDC42) |
| | | Search Tocris compounds for RHOB |
|
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009
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