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Aliases for ARGFXP2 Gene

Subcategory (RNA class) for ARGFXP2 Gene

antisense

Aliases for ARGFXP2 Gene

  • Arginine-Fifty Homeobox Pseudogene 2 2 3 5

External Ids for ARGFXP2 Gene

ORGUL Members for ARGFXP2 Gene

Previous GeneCards Identifiers for ARGFXP2 Gene

  • GC17U900558
  • GC17M027501
  • GC17M030477

Summaries for ARGFXP2 Gene

Entrez Gene Summary for ARGFXP2 Gene

  • Homeobox genes encode DNA-binding proteins, many of which are thought to be involved in early embryonic development. Homeobox genes encode a DNA-binding domain of 60 to 63 amino acids referred to as the homeodomain. This pseudogene is a member of the ARGFX homeobox gene family. [provided by RefSeq, Jul 2008]

GeneCards Summary for ARGFXP2 Gene

ARGFXP2 (Arginine-Fifty Homeobox Pseudogene 2) is a Pseudogene, and is affiliated with the antisense RNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ARGFXP2 Gene

Genomics for ARGFXP2 Gene

Regulatory Elements for ARGFXP2 Gene

Enhancers for ARGFXP2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17F032150 1.1 Ensembl ENCODE 0.8 -0.3 -309 3.0 HDGF ARNT CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF302 CBX5 TMEM98 COPRS RHOT1 EVI2A ARGFXP2 PIR59000
GH17F032157 0.2 ENCODE 0.4 -5.9 -5896 0.3 GATA3 JUND CTBP1 DPF2 FOS TCF7L2 PIR59000 ARGFXP2
GH17F032144 0.5 ENCODE 0.4 +7.0 6997 0.2 BCOR ZNF121 ZMYM3 LOC105371730 ARGFXP2
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around ARGFXP2 on UCSC Golden Path with GeneCards custom track

Genomic Location for ARGFXP2 Gene

Chromosome:
17
Start:
32,150,357 bp from pter
End:
32,151,571 bp from pter
Size:
1,215 bases
Orientation:
Minus strand

Genomic View for ARGFXP2 Gene

Genes around ARGFXP2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ARGFXP2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ARGFXP2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ARGFXP2 Gene

Proteins for ARGFXP2 Gene

Post-translational modifications for ARGFXP2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ARGFXP2 Gene

Domains & Families for ARGFXP2 Gene

Gene Families for ARGFXP2 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ARGFXP2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ARGFXP2 Gene

Function for ARGFXP2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ARGFXP2 Gene

Localization for ARGFXP2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ARGFXP2 Gene

Pathways & Interactions for ARGFXP2 Gene

SuperPathways for ARGFXP2 Gene

No Data Available

Interacting Proteins for ARGFXP2 Gene

Gene Ontology (GO) - Biological Process for ARGFXP2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ARGFXP2 Gene

Transcripts for ARGFXP2 Gene

mRNA/cDNA for ARGFXP2 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ARGFXP2 Gene

Arginine-fifty homeobox pseudogene 2:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ARGFXP2 Gene

No ASD Table

Relevant External Links for ARGFXP2 Gene

GeneLoc Exon Structure for
ARGFXP2
ECgene alternative splicing isoforms for
ARGFXP2

Expression for ARGFXP2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ARGFXP2 Gene

NURSA nuclear receptor signaling pathways regulating expression of ARGFXP2 Gene:

ARGFXP2

SOURCE GeneReport for Unigene cluster for ARGFXP2 Gene:

Hs.631752
genes like me logo Genes that share expression patterns with ARGFXP2: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for ARGFXP2 Gene

Orthologs for ARGFXP2 Gene

Evolution for ARGFXP2 Gene

ENSEMBL:
Gene Tree for ARGFXP2 (if available)
TreeFam:
Gene Tree for ARGFXP2 (if available)

No data available for Orthologs for ARGFXP2 Gene

Paralogs for ARGFXP2 Gene

No data available for Paralogs for ARGFXP2 Gene

Variants for ARGFXP2 Gene

Sequence variations from dbSNP and Humsavar for ARGFXP2 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs112485020 -- 32,153,471(+) CTGGG(C/G)AACAT intron-variant, upstream-variant-2KB
rs112682767 -- 32,150,959(+) TGATT(-/GCT)GCTGC intron-variant, nc-transcript-variant
rs113724976 -- 32,152,880(+) CTCAC(C/T)GTAGC intron-variant, upstream-variant-2KB, reference, missense
rs114164052 -- 32,151,080(+) TCCTG(A/C)GTGAA intron-variant, nc-transcript-variant
rs12940465 -- 32,150,826(+) GGTCT(A/G)AGAGC intron-variant, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for ARGFXP2 Gene

Variant ID Type Subtype PubMed ID
esv2669243 CNV deletion 23128226
esv2758684 CNV gain 17122850
esv3640377 CNV gain 21293372
esv3640378 CNV loss 21293372
nsv1057055 CNV gain 25217958
nsv1066680 CNV gain 25217958
nsv978412 CNV duplication 23825009

Relevant External Links for ARGFXP2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ARGFXP2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ARGFXP2 Gene

Disorders for ARGFXP2 Gene

Relevant External Links for ARGFXP2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ARGFXP2

No disorders were found for ARGFXP2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ARGFXP2 Gene

Publications for ARGFXP2 Gene

  1. Annotation, nomenclature and evolution of four novel homeobox genes expressed in the human germ line. (PMID: 17005330) Booth H.A. … Holland P.W.H. (Gene 2007) 3 64

Products for ARGFXP2 Gene

Sources for ARGFXP2 Gene

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