Free for academic non-profit institutions. Other users need a Commercial license

Aliases for ARGFXP1 Gene

Aliases for ARGFXP1 Gene

  • Arginine-Fifty Homeobox Pseudogene 1 2 3 5

External Ids for ARGFXP1 Gene

Previous GeneCards Identifiers for ARGFXP1 Gene

  • GC05U900536
  • GC05P122039
  • GC05P117199
  • GC05P122012

Summaries for ARGFXP1 Gene

Entrez Gene Summary for ARGFXP1 Gene

  • Homeobox genes encode DNA-binding proteins, many of which are thought to be involved in early embryonic development. Homeobox genes encode a DNA-binding domain of 60 to 63 amino acids referred to as the homeodomain. This pseudogene is a member of the ARGFX homeobox gene family. [provided by RefSeq, Jul 2008]

GeneCards Summary for ARGFXP1 Gene

ARGFXP1 (Arginine-Fifty Homeobox Pseudogene 1) is a Pseudogene.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ARGFXP1 Gene

Genomics for ARGFXP1 Gene

Regulatory Elements for ARGFXP1 Gene

Enhancers for ARGFXP1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05G122696 1.4 Ensembl ENCODE dbSUPER 0.3 +21.4 21362 1.0 ZNF493 ZFP64 ZNF121 ZNF138 ZNF354C KLF7 ZNF202 ZNF654 SP3 ZNF680 SNX2 ENSG00000260686 SRFBP1 ZNF474 LOX KRT8P33 PRDM6 ARGFXP1 GC05M122721
GH05G122701 1.3 FANTOM5 ENCODE dbSUPER 0.3 +26.6 26574 1.9 HDGF PKNOX1 MTA2 CBFB JUNB GATAD2B DPF2 EP300 NR2F2 RELA SNX2 PRDM6 RN7SL689P ENSG00000260686 SNX24 GC05M122721 ARGFXP1
GH05G122704 0.9 ENCODE dbSUPER 0.3 +29.4 29428 0.5 ZNF664 MAFF ZNF316 MAFG NFE2 EMSY MAFK NFE2L2 ENSG00000260686 GC05M122721 ARGFXP1
GH05G122698 0.7 FANTOM5 dbSUPER 0.3 +23.2 23181 0.3 ZNF316 PRDM1 SNX2 PRDM6 ARGFXP1 GC05M122721
GH05G122721 1 Ensembl ENCODE 0.2 +47.2 47238 2.5 TBL1XR1 EBF1 EGR1 CBX5 EED ZSCAN5C ETV6 RELB IKZF2 CREM LINC02201 RN7SL689P PRDM6 GC05M122721 ARGFXP1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ARGFXP1 on UCSC Golden Path with GeneCards custom track

Genomic Location for ARGFXP1 Gene

Chromosome:
5
Start:
122,675,700 bp from pter
End:
122,680,538 bp from pter
Size:
4,839 bases
Orientation:
Plus strand

Genomic View for ARGFXP1 Gene

Genes around ARGFXP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ARGFXP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ARGFXP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ARGFXP1 Gene

Proteins for ARGFXP1 Gene

Post-translational modifications for ARGFXP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ARGFXP1 Gene

Domains & Families for ARGFXP1 Gene

Gene Families for ARGFXP1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ARGFXP1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ARGFXP1 Gene

Function for ARGFXP1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ARGFXP1 Gene

Localization for ARGFXP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ARGFXP1 Gene

Pathways & Interactions for ARGFXP1 Gene

SuperPathways for ARGFXP1 Gene

No Data Available

Interacting Proteins for ARGFXP1 Gene

Gene Ontology (GO) - Biological Process for ARGFXP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ARGFXP1 Gene

Drugs & Compounds for ARGFXP1 Gene

No Compound Related Data Available

Transcripts for ARGFXP1 Gene

mRNA/cDNA for ARGFXP1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ARGFXP1 Gene

No ASD Table

Relevant External Links for ARGFXP1 Gene

GeneLoc Exon Structure for
ARGFXP1
ECgene alternative splicing isoforms for
ARGFXP1

Expression for ARGFXP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ARGFXP1 Gene

mRNA differential expression in normal tissues according to GTEx for ARGFXP1 Gene

This gene is overexpressed in Fallopian Tube (x15.5), Nerve - Tibial (x10.2), and Ovary (x8.7).

NURSA nuclear receptor signaling pathways regulating expression of ARGFXP1 Gene:

ARGFXP1
genes like me logo Genes that share expression patterns with ARGFXP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ARGFXP1 Gene

Orthologs for ARGFXP1 Gene

Evolution for ARGFXP1 Gene

ENSEMBL:
Gene Tree for ARGFXP1 (if available)
TreeFam:
Gene Tree for ARGFXP1 (if available)

No data available for Orthologs for ARGFXP1 Gene

Paralogs for ARGFXP1 Gene

No data available for Paralogs for ARGFXP1 Gene

Variants for ARGFXP1 Gene

Relevant External Links for ARGFXP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ARGFXP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ARGFXP1 Gene

Disorders for ARGFXP1 Gene

No disorders were found for ARGFXP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ARGFXP1 Gene

Publications for ARGFXP1 Gene

  1. Annotation, nomenclature and evolution of four novel homeobox genes expressed in the human germ line. (PMID: 17005330) Booth H.A. … Holland P.W.H. (Gene 2007) 3 64

Products for ARGFXP1 Gene

Sources for ARGFXP1 Gene

Content
Loading form....