Set Analyses:
Advanced Search

Advanced Search

 
Search By
Section (entire)
for


 
or upload a file of gene symbols


Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

ARFIP2 Gene

protein-coding   GIFtS: 60
GCID: GC11M006496

ADP-ribosylation factor interacting protein 2

 Explore 1 disease affiliated with
ARFIP2 via our new
 Human Malady Compendium 
Biological research products
for ARFIP2
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
ADP-Ribosylation Factor Interacting Protein 21 2     ADP-Ribosylation Factor-Interacting Protein 23
POR11 2 3     Partner Of RAC13
Arfaptin-21     Protein POR13
Partner Of RAC1 (Arfaptin 2)2     

External Ids:    HGNC: 171601   Entrez Gene: 236472   Ensembl: ENSG000001322547   OMIM: 6016385   UniProtKB: P533653   

Export aliases for ARFIP2 gene to outside databases

Previous GC identifers: GC11M006455 GC11M006461 GC11M006453 GC11M006156


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: ARFP2_HUMAN, P53365
Function: Putative target protein of ADP-ribosylation factor. Involved in membrane ruffling

Gene Wiki entry for ARFIP2


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000011.9  NC_018922.1  NT_009237.18  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the ARFIP2 gene promoter:
         GR   AREB6   Egr-2   PPAR-gamma1   PPAR-gamma2   GR-alpha   TGIF   Pax-4a   ATF   Hlf   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidARFIP2 promoter sequence
   Search SABiosciences Chromatin IP Primers for ARFIP2

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ARFIP2


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 11p15   Ensembl cytogenetic band:  11p15.4   HGNC cytogenetic band: 11p15

ARFIP2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ARFIP2 gene location

GeneLoc information about chromosome 11         GeneLoc Exon Structure

GeneLoc location for GC11M006496:  view genomic region     (about GC identifiers)

Start:
6,496,910 bp from pter      End:
6,502,666 bp from pter
Size:
5,757 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: ARFP2_HUMAN, P53365 (See protein sequence)
Recommended Name: Arfaptin-2  
Size: 341 amino acids; 37856 Da
Subunit: Interacts with RAC1 by binding directly to it. Specifically binds to GTP-bound ARF1 and ARF6, but binds to
RAC1.GTP and RAC1.GDP with similar affinities. Directly interacts with ARL1 GTP-bound form; this interaction leads to
a > 4-fold increase in the amount of ARL1-bound GTP at steady state level
5 PDB 3D structures from and Proteopedia for ARFIP2:
1I49 (3D)        1I4D (3D)        1I4L (3D)        1I4T (3D)        4DCN (3D)    
Secondary accessions: B4E306 D3DQT5
Alternative splicing: 2 isoforms:  P53365-1   P53365-2   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for ARFIP2: NX_P53365

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_P53365

  • ARFIP2 Protein expression data from MOPED and PaxDb:    About this image 
    ARFIP2 Protein Expression
    REFSEQ proteins (4 alternative transcripts): 
    NP_001229783.1  NP_001229784.1  NP_001229785.1  NP_036534.1  

    ENSEMBL proteins: 
     ENSP00000254584   ENSP00000379998   ENSP00000434564   ENSP00000434124   ENSP00000398375  
     ENSP00000391427  

    Human Recombinant Protein Products for ARFIP2: 
    Browse Purified and Recombinant Proteins at EMD Millipore
    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    OriGene Purified Protein: ARFIP2
    OriGene Protein Over-expression Lysate: ARFIP2
    OriGene Custom Protein Services for ARFIP2 
    GenScript Custom Purified and Recombinant Proteins Services for ARFIP2
    Novus Biologicals ARFIP2 Proteins
    Novus Biologicals ARFIP2 Lysates
    Browse Sino Biological Recombinant Proteins
    ProSpec Recombinant Protein for ARFIP2
    Uscn Proteins for ARFIP2

    Gene Ontology (GO): 5 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0001726ruffle IMP8670882
    GO:0005625soluble fraction ----
    GO:0005737cytoplasm TAS9312003
    GO:0005886plasma membrane TAS9312003
    GO:0005938cell cortex IDA9312003

    ARFIP2 for ontologies           About GeneDecksing



    ARFIP2 Antibody Products: 
    Browse EMD Millipore's Extensive Line of Mono- and Polyclonal Antibodies
    Browse R&D Systems for Antibodies
    OriGene Antibodies: ARFIP2
    OriGene Custom Antibody Services for ARFIP2 
    GenScript Custom Superior Antibodies Services for ARFIP2
    Novus Biologicals ARFIP2 Antibodies
    Abcam antibodies for ARFIP2 
    Uscn Antibodies for ARFIP2
    ThermoFisher Antibodies for ARFIP2

    Assay Products for ARFIP2: 
    Browse Kits and Assays available from EMD Millipore
    OriGene Custom Immunoassay Development
    Browse OriGene Fluorogenic Cell Assay Kits
    Browse R&D Systems for biochemical assays
    GenScript Custom Assay Services for ARFIP2
    Browse Enzo Life Sciences for kits & assays
    Uscn ELISAs and CLIAs for ARFIP2


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    ARFIP2 for domains           About GeneDecksing

    1 InterPro domain/family:
     IPR010504 AH_dom

    Graphical View of Domain Structure for InterPro Entry P53365

    ProtoNet protein and cluster: P53365

    1 Blocks protein family: IPB010504 Arfaptin-like

    UniProtKB/Swiss-Prot: ARFP2_HUMAN, P53365
    Similarity: Contains 1 AH domain


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, Sirion Biotech, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, Sirion Biotech, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Molecular Function:

         UniProtKB/Swiss-Prot Summary: ARFP2_HUMAN, P53365
    Function: Putative target protein of ADP-ribosylation factor. Involved in membrane ruffling

         Gene Ontology (GO): 5 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005515protein binding IPI--
    GO:0005525GTP binding TAS8670882
    GO:0019904protein domain specific binding IEA--
    GO:0030742GTP-dependent protein binding TAS9312003
    GO:0048365Rac GTPase binding TAS9312003
         
    ARFIP2 for ontologies           About GeneDecksing


    Phenotypes:
         2 GenomeRNAi human phenotypes for ARFIP2:
     Decreased POU5F1-GFP protein e  Decreased circadian period len 

    Animal Models:
       inGenious Targeting Laboratory - Customizable classic, inducible, and humanized mouse model solutions for ARFIP2 

    miRNA
    Products:
        
    miRTarBase miRNAs that target ARFIP2:
    hsa-mir-155 (MIRT001570)

    OriGene 3'-UTR Clone: ARFIP2
    Browse MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat ARFIP2
    8/52 QIAGEN miScript miRNA Assays for microRNAs that regulate ARFIP2 (see all 52):
    hsa-miR-140-5p hsa-miR-582-3p hsa-miR-520f hsa-miR-328 hsa-miR-488 hsa-miR-192 hsa-miR-4267 hsa-miR-3916
    SwitchGear 3'UTR luciferase reporter plasmidARFIP2 3' UTR sequence
    Inhib. RNA
    Products:
        
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for ARFIP2 (see all 7)
    OriGene shRNA RFP: ARFIP2
    OriGene siRNA: ARFIP2
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat ARFIP2
    Sirion Biotech Custom design and validation of potent shRNA sequences against ARFIP2 

    Gene Editing
    Products:
    DNA2.0 Custom Protein Engineering Service for ARFIP2
    Sirion Biotech Customized adenovirus for overexpression of ARFIP2 
    Sirion Biotech Customized adenovirus for potent knockdown of ARFIP2

    Clone
    Products:
         
    Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for ARFIP2 (see all 3)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for ARFIP2 (see all 2)
    OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector: ARFIP2 (NM_012402)
    Browse Sino Biological Human cDNA Clones
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for ARFIP2
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat ARFIP2 

    Cell Line
    Products:
         
    GenScript Custom overexpressing Cell Line Services for ARFIP2
    Search LifeMap BioReagents cell lines for ARFIP2
    Sirion Biotech Customized stable knockdown cell line services for ARFIP2 
    Sirion Biotech Customized inducible knockdown cell line services for ARFIP2
    Sirion Biotech Customized stable overexpressing cell line services for ARFIP2
    Sirion Biotech Customized inducible overexpressing cell line services for ARFIP2

    In Situ Assay
    Products:
       

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ARFIP2


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways - 5/8 super-pathways (see all 8About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1G-protein signaling_RAC1 in cellular process
    G-protein signaling RAC1 in cellular process1.00
    G-protein signaling_RAC1 in cellular process1.00
    2Development HGF signaling pathway
    Cytoskeleton remodeling_Role of PDGFs in cell migration0.11
    Cytoskeleton remodeling Role of PDGFs in cell migration0.11
    3Rho Family GTPases
    Rho Family GTPases1.00
    4Arf1 pathway
    Arf1 pathway1.00
    5Apoptotic Pathways in Synovial Fibroblasts
    Rac1 Pathway0.58

    Pathway sources
    See GeneCards unified pathways
    Show all pathways

    2 EMD Millipore Pathways for ARFIP2
        G-protein signaling RAC1 in cellular process
    Cytoskeleton remodeling Role of PDGFs in cell migration

    5 Downloadable PowerPoint Slides of QIAGEN Pathway Central Maps for ARFIP2
        Rac1 Pathway
    Paxillin Interactions
    Huntington's Disease Pathway
    PDGF Pathway
    Rho Family GTPases

    2 GeneGo (Thomson Reuters) Pathways for ARFIP2
        Cytoskeleton remodeling Role of PDGFs in cell migration
    G-protein signaling RAC1 in cellular process

    1 BioSystems Pathway for ARFIP2 
        Arf1 pathway



    ARFIP2 for pathways           About GeneDecksing

    Interactions:

        SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for ARFIP2

    STRING Interaction Network Preview (showing 5 interactants - click image to see 17)

    5/20 Interacting proteins for ARFIP2 (P533651, 2, 3 ENSP000002545844) via UniProtKB, MINT, STRING, and/or I2D (see all 20)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    DTNBP1Q96EV82, 3, ENSP000003416804MINT-66731 I2D: score=5 STRING: ENSP00000341680
    ITGB3BPQ133522, 3, ENSP000002710024MINT-68205 I2D: score=5 STRING: ENSP00000271002
    RAC1P630001, 3, ENSP000003484614EBI-638194,EBI-413628 I2D: score=5 STRING: ENSP00000348461
    ARF6P623301, 3, ENSP000002983164EBI-638194,EBI-2802827 I2D: score=4 STRING: ENSP00000298316
    RAC2P151533, ENSP000002490714I2D: score=3 STRING: ENSP00000249071
    About this table

    Gene Ontology (GO): 5 biological process terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006928cellular component movement TAS8670882
    GO:0007264small GTPase mediated signal transduction TAS8670882
    GO:0030032lamellipodium assembly TAS9312003
    GO:0030036actin cytoskeleton organization IMP9312003
    GO:0031529ruffle organization TAS9312003

    ARFIP2 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section

    ARFIP2 for compounds           About GeneDecksing

    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for ARFIP2

    1 HMDB Compound for ARFIP2    About this table
    CompoundSynonyms CAS #PubMed Ids
    Guanosine triphosphate5'-GTP (see all 10)86-01-1--
    1 Novoseek chemical compound relationship for ARFIP2 gene    About this table
    Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    gtp 44.4 1 9312003 (1)

    Search CenterWatch for drugs/clinical trials and news about ARFIP2 / ARFP2 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, Sirion Biotech, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for ARFIP2 gene (4 alternative transcripts): 
    NM_001242854.1  NM_001242855.1  NM_001242856.1  NM_012402.3  

    Unigene Cluster for ARFIP2:

    ADP-ribosylation factor interacting protein 2
    Hs.75139  [show with all ESTs]
    Unigene Representative Sequence: NM_001242854
    10 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000254584(uc001mdk.3 uc010ran.2 uc010ral.2 uc010ram.2)
    ENST00000396777 ENST00000531037 ENST00000525235 ENST00000528892(uc009yfe.2)
    ENST00000530410 ENST00000529847 ENST00000525329 ENST00000423813 ENST00000445086


    miRNA
    Products:
         
    OriGene 3'-UTR Clone: ARFIP2
    Browse OriGene MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat ARFIP2
    8/52 QIAGEN miScript miRNA Assays for microRNAs that regulate ARFIP2 (see all 52):
    hsa-miR-140-5p hsa-miR-582-3p hsa-miR-520f hsa-miR-328 hsa-miR-488 hsa-miR-192 hsa-miR-4267 hsa-miR-3916
    SwitchGear 3'UTR luciferase reporter plasmidARFIP2 3' UTR sequence
    Inhib. RNA
    Products:
         
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for ARFIP2 (see all 7)
    OriGene shRNA RFP: ARFIP2
    OriGene siRNA: ARFIP2
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat ARFIP2
    Sirion Biotech Custom design and validation of potent shRNA sequences against ARFIP2 
    Clone
    Products:
         
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for ARFIP2 (see all 3)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for ARFIP2 (see all 2)
    OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector: ARFIP2 (NM_012402)
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for ARFIP2
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat ARFIP2 
    Primer
    Products:
        
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for ARFIP2
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat ARFIP2
      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat ARFIP2
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat ARFIP2

    Additional cDNA sequence: 

    AK026390.1 AK300855.1 AK301856.1 AK301972.1 AK304512.1 AK310267.1 AK311004.1 BC000392.2 
    U52522.1 X97567.1 

    24/25 DOTS entries (see all 25):

    DT.317682  DT.95260055  DT.100037134  DT.100864420  DT.95260059  DT.95260067  DT.101959902  DT.120709587 
    DT.120709362  DT.120709466  DT.120709440  DT.95260069  DT.97762248  DT.100658806  DT.120709477  DT.75158730 
    DT.120709519  DT.120709318  DT.120709501  DT.100639536  DT.100731839  DT.100848581  DT.95152152  DT.95260054 

    24/436 AceView cDNA sequences (see all 436):

    BQ108558 BQ219311 AI673192 BQ057966 CR606576 BE464811 BU740689 AA496338 
    BX378226 AA769484 W44387 AA425908 AW612115 BQ883020 BI255531 CB163549 
    AI368743 BQ066356 F10270 BE795243 BM852888 CA488547 CA455158 BE274809 

    GeneLoc Exon Structure

    5/25 Alternative Splicing Database (ASD) splice patterns (SP) for ARFIP2 (see all 25)    About this scheme

    ExUns: 1a · 1b · 1c · 1d · 1e · 1f ^ 2 ^ 3a · 3b ^ 4 ^ 5a · 5b · 5c ^ 6a · 6b · 6c · 6d · 6e · 6f · 6g · 6h ^ 7a · 7b · 7c ^ 8a · 8b ^
    SP1:                                -     -     -           -                 -     -     -     -                             -           -     -     -     -   
    SP2:                                -     -     -           -                 -     -     -     -                             -                             -   
    SP3:                                -     -                 -                 -     -     -     -                             -                             -   
    SP4:                                -     -     -           -                 -     -     -     -                             -                             -   
    SP5:                                -     -                 -                 -     -     -     -                             -                             -   

    ExUns: 9 ^ 10a · 10b · 10c ^ 11a · 11b · 11c · 11d · 11e · 11f · 11g ^ 12a · 12b · 12c · 12d
    SP1:  -                                                           -                           
    SP2:  -                                                           -                           
    SP3:  -                                                                                       
    SP4:  -                                                                                       
    SP5:                                                                                          


    ECgene alternative splicing isoforms for ARFIP2

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    ARFIP2 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: GTACATCCTT
    ARFIP2 Expression
    About this image
    See ARFIP2 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for ARFIP2

    SOURCE GeneReport for Unigene cluster: Hs.75139
        SABiosciences Expression via Pathway-Focused PCR Arrays including ARFIP2: 

              Cytoskeleton Regulators in human mouse rat
              Huntington's Disease in human mouse rat

    Primer
    Products:
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for ARFIP2
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat ARFIP2
    QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat ARFIP2
    QIAGEN QuantiFast Probe-based Assays in human, mouse, rat ARFIP2
    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ARFIP2

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of animals.

    Orthologs for ARFIP2 gene from 5/20 species (see all 20)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    chicken
    (Gallus gallus)
    Aves ARFIP21 ADP-ribosylation factor interacting protein 2 (arfaptin more 79.55(n)
    85.17(a)
      419075  XM_417266.3  XP_417266.3 
    lizard
    (Anolis carolinensis)
    Reptilia ARFIP26
    --
    82(a)
    1 ↔ 1
    GL343952.1(85984-102530)
    zebrafish
    (Danio rerio)
    Actinopterygii arfip2b1 ADP-ribosylation factor interacting protein 2b 71.03(n)
    77.03(a)
      550342  NM_001017649.1  NP_001017649.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta CG171841 CG17184 55.42(n)
    51.37(a)
      41353  NM_141801.2  NP_650058.1 
    worm
    (Caenorhabditis elegans)
    Secernentea F54C8.71 Protein F54C8.7 45.24(n)
    32.35(a)
      176326  NM_181932.3  NP_871661.1 


    ENSEMBL Gene Tree for ARFIP2 (if available)
    TreeFam Gene Tree for ARFIP2 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for ARFIP2 gene
    ARFIP12  
    1 SIMAP similar gene for ARFIP2 using alignment to 3 protein entries:     ARFP2_HUMAN (see all proteins):
    ARFIP1

    ARFIP2 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/131 NCBI SNPs in ARFIP2 are shown (see all 131    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 11 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1430460791,2
    --6497858(+) GGCCAA/GCAATG 4 -- ut310--------
    rs18029211,2
    C,F--6497884(-) AAAGGG/TGTGGG 4 -- ut311Minor allele frequency- T:0.07WA 118
    rs1470064161,2
    --6497909(+) TCTCTA/GCAATG 4 -- ut310--------
    rs1145861251,2
    C,F--6497975(+) AGTCCG/AAGAAG 4 -- ut311Minor allele frequency- A:0.03WA 118
    rs37412691,2
    --6498019(+) CTGTCA/GTTGGT 4 -- ut31 ese30--------
    rs768494001,2
    C,F--6498174(+) CCAGGC/TCCTCT 4 -- ut311Minor allele frequency- T:0.04WA 118
    rs1130873391,2
    C--6498175(+) CAGGCA/C/GCTCTT 8 -- ut311CSA 1
    rs1417980601,2
    C--6498464(+) CATTGC/TGGAAG 8 H R mis10--------
    rs1133311041,2
    C--6498675(+) AGAAAA/CCTCAC 4 -- int10--------
    rs1505525901,2
    --6498732(+) TTTTCC/TCAGTT 4 -- int10--------

    HapMap Linkage Disequilibrium report for ARFIP2 (6496910 - 6502666 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
          Database of Genomic Variants (DGV) variations for ARFIP2: --

    SABiosciences Cancer Mutation PCR Assays
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing ARFIP2
    DNA2.0 Custom Variant and Variant Library Synthesis for ARFIP2

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    ARFIP2 for disorders           About GeneDecksing

    OMIM gene information: 601638    OMIM disorders: --

    1 disease for ARFIP2:    About MalaCards
    huntington's disease


    Export disorders for ARFIP2 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for ARFIP2 gene, integrated from 9 sources (see all 28):
    (articles sorted by number of sources associating them with ARFIP2)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Arfaptin 1, a putative cytosolic target protein of ADP-ribosylation factor, is recruited to Golgi membranes. (PubMed id 9038142)1, 2, 3 Kanoh H.... Exton J.H. (1997)
    2. Identification of a novel Rac1-interacting protein involved in membrane ruffling. (PubMed id 8670882)1, 2, 3 van Aelst L.... Bar-Sagi D. (1996)
    3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    4. The structural basis of Arfaptin-mediated cross-talk between Rac and Arf signalling pathways. (PubMed id 11346801)1, 2 Tarricone C.... Smerdon S.J. (2001)
    5. Phosphorylation of arfaptin 2 at Ser260 by Akt Inhibits PolyQ-huntingtin-induced toxicity by rescuing proteasome impairment. (PubMed id 15809304)1, 9 Rangone H....Humbert S. (2005)
    6. A role for POR1, a Rac1-interacting protein, in ARF6-mediated cytoskeletal rearrangements. (PubMed id 9312003)1, 9 D'Souza-Schorey C....Van Aelst L. (1997)
    7. Intersectin (ITSN) family of scaffolds function as mol ecular hubs in protein interaction networks. (PubMed id 22558309)1 Wong K.A....O'Bryan J.P. (2012)
    8. Structural basis for membrane binding specificity of t he Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin-2 determined by Arl1 GTPase. (PubMed id 22679020)1 Nakamura K....Wakatsuki S. (2012)
    9. A high-throughput approach for measuring temporal chan ges in the interactome. (PubMed id 22863883)1 Kristensen A.R....Foster L.J. (2012)
    10. Initial characterization of the human central proteome. (PubMed id 21269460)2 Burkard T.R.... Colinge J. (2011)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 23647 HGNC: 17160 AceView: ARFIP2 Ensembl:ENSG00000132254 euGenes: HUgn23647
    ECgene: ARFIP2 H-InvDB: ARFIP2

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for ARFIP2 Pharmacogenomics, SNPs, Pathways
    ATLAS Chromosomes in Cancer entry for ARFIP2 Genetics and Cytogenetics in Oncology and Haematology

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for ARFIP2 gene:
    Search GeneIP for patents involving ARFIP2

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, LifeMap BioReagents, and Sirion Biotech, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory)
    About This Section

     
     EMD Millipore Custom Antibody & Bulk Services
     EMD Millipore Preclinical / Clinical Development Services
     EMD Millipore Immunoassay Services
     EMD Millipore Target Screening & Profiling Services

      
     Browse Antibodies   Browse Cell Culture Products  
     Browse ELISAs   Browse Flow Cytometry Kits  
     Browse Primer Pairs   Browse Kinase Activity Assays/Reagents  
     Browse ELISpot Kits/Development Modules   Browse TFB/Immunoprecipitation Assays  
     Browse Apoptosis Detection Kits/Reagents   Browse Ubiquitin Proteasome Pathway (UPP) Assay Kits/Reagents  
     Browse DNA Damage/Repair Kits/Reagents   Browse Multiplex/Array Assay Kits/Reagents  
     Browse Cell Selection/Detection Kits/Reagents   Browse Secondary Antibodies/Controls/Staining Reagents  
     Browse Phosphatase Activity Assays/Reagents   Browse Recombinant/Natural Proteins  
     OriGene Antibodies for ARFIP2   OriGene shRNA RFP for ARFIP2  
     OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for ARFIP2   OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for ARFIP2  
     OriGene Protein Over-expression Lysate for ARFIP2   Browse OriGene Fluorogenic Cell Assay Kits  
     OriGene siRNA for ARFIP2   OriGene 3'-UTR Clone for ARFIP2  
     OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for ARFIP2   OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for ARFIP2  
     Browse OriGene GFP tagged cDNA clones in CMV expression vector   Browse OriGene MicroRNA Expression Plasmids  
     Browse OriGene basic RS shRNAs   Browse OriGene validated miRNA SYBR primer pairs  
     OriGene Purified Protein for ARFIP2   OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling  
     OriGene Custom Antibody Services for ARFIP2   OriGene Custom Protein Services for ARFIP2  
     OriGene Custom Immunoassay Development  

     
     
     QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat ARFIP2
     QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing ARFIP2
     QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ARFIP2
     QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat ARFIP2
     QIAGEN QuantiFast Probe-based Assays in human, mouse, rat ARFIP2
     QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat ARFIP2
     GenScript Custom Purified and Recombinant Proteins Services for ARFIP2 GenScript cDNA clones with any tag delivered in your preferred vector for ARFIP2
     GenScript Custom Assay Services for ARFIP2 GenScript Custom Superior Antibodies Services for ARFIP2
     GenScript Custom overexpressing Cell Line Services for ARFIP2 CloneReady with Over 120,000 Genes
     Gene Synthesis: Any Gene in Any Vector Vector-based siRNA and miRNA, Ready for Transfection
     Gene Mutant Library, Variants up to 10^11 Plasmid Preparation
     Custom Peptide Services
     Search for Antibodies & Assays

     Regulatory tfbs in ARFIP2 promoter
     Search Chromatin IP Primers for ARFIP2
     RT2 qPCR Primer Assay in human, mouse, rat ARFIP2
     GNC Network for ARFIP2
     SABiosciences PCR Arrays including human, mouse, rat ARFIP2
     Search Tocris compounds for ARFIP2
     Browse Sino Biological Proteins and Antibodies
     Browse Sino Biological cDNA Clones
     Antibodies/Proteins Production Services
     Rabbit Monoclonal Antibody Platform
     Bulk Purchasing
     Search www.enzolifesciences.com for proteins, assays, substrates, inhibitors & antibodies
     Novus Tissue Slides
     ARFIP2 antibodies
     ARFIP2 proteins
     ARFIP2 lysates
     Antibodies for ARFIP2
     See all of Abcam's Antibodies, Kits and Proteins for ARFIP2
     Custom Antibody / Protein Production Service
     Bulk Purchasing
     Advantages of Rabbit Monoclonal antibodies
     Abcam protocols and scientific support
     Recombinant Protein for ARFIP2




     ARFIP2 Proteins, Antibodies, CLIAs, and ELISAs
     Search LifeMap BioReagents cell lines for ARFIP2
     Gene Synthesis
     Protein Engineering
     Variant Library Synthesis
     Codon Optimization
     Protein Production and Purification
     Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ARFIP2
     SwitchGear 3'UTR luciferase reporter plasmids for ARFIP2
     SwitchGear Promoter luciferase reporter plasmids for ARFIP2
     ThermoFisher Antibodies for ARFIP2
     Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat ARFIP2
     inGenious Targeting Laboratory - Customizable classic, inducible, and humanized mouse model solutions for ARFIP2
    Sirion Biotech Customized:
     stable knockdown cell line services for ARFIP2
     inducible knockdown cell line services for ARFIP2
     design and validation of potent shRNA sequences against ARFIP2
     adenovirus for potent knockdown of ARFIP2
     adenovirus for overexpression of ARFIP2
     stable overexpressing cell line services for ARFIP2
     inducible overexpressing cell line services for ARFIP2
           
    GeneCards Homepage - Last full update: 18 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013 , 14 May 2013

    View Random Gene

    Category
    VWF
    (GIFTS: 73)
    von Willebrand factor
    GIFtS Group
    The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


    Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

    Hot genes      Disease genes      ARFIP2 gene at Home site.
    hostname: 356980-web2.xennexinc.com index build: 106 solr: 1.4