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Aliases for ARFGAP2 Gene

Aliases for ARFGAP2 Gene

  • ADP Ribosylation Factor GTPase Activating Protein 2 2 3 5
  • Zinc Finger Protein 289, ID1 Regulated 2 3
  • GTPase-Activating Protein ZNF289 3 4
  • ZNF289 3 4
  • ADP-Ribosylation Factor GTPase-Activating Protein 2 3
  • Zinc Finger Protein 289 4
  • NBLA10535 3
  • ARF GAP 2 4
  • ZFP289 3
  • IRZ 3

External Ids for ARFGAP2 Gene

Previous HGNC Symbols for ARFGAP2 Gene

  • ZNF289

Previous GeneCards Identifiers for ARFGAP2 Gene

  • GC11M047143
  • GC11M046884
  • GC11M047185
  • GC11M047280
  • GC11M047937
  • GC11M050790
  • GC11M051585

Summaries for ARFGAP2 Gene

GeneCards Summary for ARFGAP2 Gene

ARFGAP2 (ADP Ribosylation Factor GTPase Activating Protein 2) is a Protein Coding gene. Among its related pathways are Transport to the Golgi and subsequent modification and Vesicle-mediated transport. GO annotations related to this gene include GTPase activator activity. An important paralog of this gene is ARFGAP3.

UniProtKB/Swiss-Prot for ARFGAP2 Gene

  • GTPase-activating protein (GAP) for ADP ribosylation factor 1 (ARF1). Implicated in coatomer-mediated protein transport between the Golgi complex and the endoplasmic reticulum. Hydrolysis of ARF1-bound GTP may lead to dissociation of coatomer from Golgi-derived membranes to allow fusion with target membranes.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ARFGAP2 Gene

Genomics for ARFGAP2 Gene

Regulatory Elements for ARFGAP2 Gene

Enhancers for ARFGAP2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11F047152 1.1 Ensembl ENCODE 12.3 +23.2 23203 3.8 HDGF PKNOX1 ARNT CREB3L1 ARID4B SIN3A ZNF2 YY1 ZNF766 ZNF143 C11orf49 LRP4 NUP160 ARFGAP2 PACSIN3 FNBP4 ENSG00000200090 ENSG00000271350 GC11P047160 ENSG00000255520
GH11F047148 1.2 Ensembl ENCODE 11.4 +28.5 28468 1.6 PKNOX1 RAD51 USF2 ZKSCAN1 ARFGAP2 PACSIN3 C11orf49 GC11P047160 ENSG00000255520
GH11F046911 1 Ensembl ENCODE 11.2 +263.8 263796 4.0 PKNOX1 MLX ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 C11orf49 RPS10P19 ARFGAP2 PACSIN3 NUP160 ENSG00000200090 LRP4 LRP4-AS1
GH11F047225 0.4 Ensembl 11.1 -48.3 -48298 0.8 ZNF664 ZNF146 NBN PACSIN3 ACP2 RPS20P26 NR1H3 MADD LOC101928943 ARFGAP2 SLC39A13 ENSG00000256897
GH11F047103 0.7 Ensembl ENCODE 11.1 +71.8 71765 4.2 PKNOX1 TEAD4 ZMYM3 EBF1 OSR2 JUND PBX2 SCRT2 PACSIN3 LRP4 ARFGAP2 C11orf49 F2 MYBPC3 C1QTNF4 FNBP4 PIR60488 ENSG00000271350
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around ARFGAP2 on UCSC Golden Path with GeneCards custom track

Promoters for ARFGAP2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000562116 703 1601 HDGF PKNOX1 ARNT CREB3L1 WRNIP1 SIN3A DMAP1 ZNF2 YY1 ZNF207

Genomic Location for ARFGAP2 Gene

Chromosome:
11
Start:
47,164,298 bp from pter
End:
47,177,503 bp from pter
Size:
13,206 bases
Orientation:
Minus strand

Genomic View for ARFGAP2 Gene

Genes around ARFGAP2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ARFGAP2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ARFGAP2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ARFGAP2 Gene

Proteins for ARFGAP2 Gene

  • Protein details for ARFGAP2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N6H7-ARFG2_HUMAN
    Recommended name:
    ADP-ribosylation factor GTPase-activating protein 2
    Protein Accession:
    Q8N6H7
    Secondary Accessions:
    • B4DX29
    • B7Z9M7
    • D3DQQ9
    • Q3LIF2
    • Q8N3I1
    • Q96SX7

    Protein attributes for ARFGAP2 Gene

    Size:
    521 amino acids
    Molecular mass:
    56720 Da
    Quaternary structure:
    • Interacts with the coatomer complex. Interacts with the C-terminal appendage domain of COPG1.
    Miscellaneous:
    • Vero cells overexpressing truncated ARFGAP2 show accumulation of cholera toxin A subunit in the Golgi complex rather than the endoplasmic reticulum.

    Three dimensional structures from OCA and Proteopedia for ARFGAP2 Gene

    Alternative splice isoforms for ARFGAP2 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ARFGAP2 Gene

Post-translational modifications for ARFGAP2 Gene

  • Ubiquitination at Lys 429
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for ARFGAP2 Gene

Domains & Families for ARFGAP2 Gene

Gene Families for ARFGAP2 Gene

Protein Domains for ARFGAP2 Gene

Graphical View of Domain Structure for InterPro Entry

Q8N6H7

UniProtKB/Swiss-Prot:

ARFG2_HUMAN :
  • Contains 1 Arf-GAP domain.
Domain:
  • Contains 1 Arf-GAP domain.
genes like me logo Genes that share domains with ARFGAP2: view

Function for ARFGAP2 Gene

Molecular function for ARFGAP2 Gene

UniProtKB/Swiss-Prot Function:
GTPase-activating protein (GAP) for ADP ribosylation factor 1 (ARF1). Implicated in coatomer-mediated protein transport between the Golgi complex and the endoplasmic reticulum. Hydrolysis of ARF1-bound GTP may lead to dissociation of coatomer from Golgi-derived membranes to allow fusion with target membranes.

Gene Ontology (GO) - Molecular Function for ARFGAP2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005096 GTPase activator activity IEA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ARFGAP2: view
genes like me logo Genes that share phenotypes with ARFGAP2: view

Animal Model Products

miRNA for ARFGAP2 Gene

miRTarBase miRNAs that target ARFGAP2

Inhibitory RNA Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ARFGAP2 Gene

Localization for ARFGAP2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ARFGAP2 Gene

Cytoplasm. Golgi apparatus membrane; Peripheral membrane protein; Cytoplasmic side. Note=Also found on peripheral punctate structures likely to be endoplasmic reticulum-Golgi intermediate compartment.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ARFGAP2 Gene COMPARTMENTS Subcellular localization image for ARFGAP2 gene
Compartment Confidence
cytosol 5
golgi apparatus 5
plasma membrane 5
nucleus 4

Gene Ontology (GO) - Cellular Components for ARFGAP2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000139 Golgi membrane IEA --
GO:0005737 cytoplasm IDA --
GO:0005794 Golgi apparatus IDA --
GO:0005829 cytosol TAS --
GO:0005886 plasma membrane IDA --
genes like me logo Genes that share ontologies with ARFGAP2: view

Pathways & Interactions for ARFGAP2 Gene

genes like me logo Genes that share pathways with ARFGAP2: view

Gene Ontology (GO) - Biological Process for ARFGAP2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006810 transport IEA --
GO:0006888 ER to Golgi vesicle-mediated transport TAS --
GO:0006890 retrograde vesicle-mediated transport, Golgi to ER TAS --
GO:0015031 protein transport IEA --
GO:0016192 vesicle-mediated transport IEA --
genes like me logo Genes that share ontologies with ARFGAP2: view

No data available for SIGNOR curated interactions for ARFGAP2 Gene

Drugs & Compounds for ARFGAP2 Gene

(1) Drugs for ARFGAP2 Gene - From: HMDB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Guanosine triphosphate Experimental Pharma 0
genes like me logo Genes that share compounds with ARFGAP2: view

Transcripts for ARFGAP2 Gene

Unigene Clusters for ARFGAP2 Gene

ADP-ribosylation factor GTPase activating protein 2:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ARFGAP2 Gene

ExUns: 1a · 1b ^ 2a · 2b ^ 3a · 3b ^ 4a · 4b · 4c ^ 5a · 5b ^ 6a · 6b ^ 7a · 7b ^ 8 ^ 9 ^ 10 ^ 11 ^ 12
SP1: - - - - - - -
SP2: - - -
SP3: - -
SP4: -
SP5:
SP6:
SP7:

Relevant External Links for ARFGAP2 Gene

GeneLoc Exon Structure for
ARFGAP2
ECgene alternative splicing isoforms for
ARFGAP2

Expression for ARFGAP2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ARFGAP2 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for ARFGAP2 Gene

This gene is overexpressed in Peripheral blood mononuclear cells (17.9).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for ARFGAP2 Gene



Protein tissue co-expression partners for ARFGAP2 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of ARFGAP2 Gene:

ARFGAP2

SOURCE GeneReport for Unigene cluster for ARFGAP2 Gene:

Hs.436204
genes like me logo Genes that share expression patterns with ARFGAP2: view

Primer Products

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for ARFGAP2 Gene

Orthologs for ARFGAP2 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for ARFGAP2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ARFGAP2 34 35
  • 99.87 (n)
dog
(Canis familiaris)
Mammalia ARFGAP2 34 35
  • 91.41 (n)
cow
(Bos Taurus)
Mammalia ARFGAP2 34 35
  • 90.45 (n)
rat
(Rattus norvegicus)
Mammalia Arfgap2 34
  • 89.17 (n)
oppossum
(Monodelphis domestica)
Mammalia ARFGAP2 35
  • 89 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Arfgap2 34 16 35
  • 88.97 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia ARFGAP2 35
  • 84 (a)
OneToOne
chicken
(Gallus gallus)
Aves ARFGAP2 34 35
  • 77.24 (n)
lizard
(Anolis carolinensis)
Reptilia -- 35
  • 73 (a)
OneToMany
-- 35
  • 66 (a)
OneToMany
-- 35
  • 63 (a)
OneToMany
-- 35
  • 63 (a)
OneToMany
-- 35
  • 63 (a)
OneToMany
-- 35
  • 63 (a)
OneToMany
-- 35
  • 63 (a)
OneToMany
-- 35
  • 63 (a)
OneToMany
tropical clawed frog
(Silurana tropicalis)
Amphibia arfgap2 34
  • 70.72 (n)
Str.6000 34
zebrafish
(Danio rerio)
Actinopterygii arfgap2 34 35
  • 70.47 (n)
wufa11e07 34
fruit fly
(Drosophila melanogaster)
Insecta ArfGAP3 34 35
  • 50.43 (n)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP005609 34
  • 50.1 (n)
worm
(Caenorhabditis elegans)
Secernentea F07F6.4 34 35
  • 48.01 (n)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes GLO3 35
  • 22 (a)
OneToMany
thale cress
(Arabidopsis thaliana)
eudicotyledons RPA 34
  • 51.34 (n)
barley
(Hordeum vulgare)
Liliopsida Hv.5106 34
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 40 (a)
ManyToMany
-- 35
  • 31 (a)
ManyToMany
Species where no ortholog for ARFGAP2 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for ARFGAP2 Gene

ENSEMBL:
Gene Tree for ARFGAP2 (if available)
TreeFam:
Gene Tree for ARFGAP2 (if available)

Paralogs for ARFGAP2 Gene

Variants for ARFGAP2 Gene

Sequence variations from dbSNP and Humsavar for ARFGAP2 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs1055447 -- 47,164,873(-) TTTGG(G/T)ATCAG intron-variant, utr-variant-3-prime
rs1055629 -- 47,164,587(-) TCATT(C/T)TGGGC intron-variant, utr-variant-3-prime
rs1055661 -- 47,164,536(-) ACCCT(C/T)TGGCA intron-variant, utr-variant-3-prime
rs1055675 -- 47,164,509(-) TCATT(C/T)TTGGT intron-variant, utr-variant-3-prime
rs1055730 -- 47,164,476(-) GCAGT(C/T)TCAGC intron-variant, utr-variant-3-prime

Variation tolerance for ARFGAP2 Gene

Residual Variation Intolerance Score: 59.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 11.35; 92.68% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ARFGAP2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ARFGAP2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for ARFGAP2 Gene

Disorders for ARFGAP2 Gene

Relevant External Links for ARFGAP2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ARFGAP2

No disorders were found for ARFGAP2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ARFGAP2 Gene

Publications for ARFGAP2 Gene

  1. Gamma-COP appendage domain -- structure and function. (PMID: 14690497) Watson P.J. … Owen D.J. (Traffic 2004) 2 3 4 64
  2. Two human ARFGAPs associated with COP-I-coated vesicles. (PMID: 17760859) Frigerio G. … Duden R. (Traffic 2007) 3 4 64
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  5. Neuroblastoma oligo-capping cDNA project: toward the understanding of the genesis and biology of neuroblastoma. (PMID: 12880961) Ohira M. … Nakagawara A. (Cancer Lett. 2003) 3 4 64

Products for ARFGAP2 Gene

Sources for ARFGAP2 Gene

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