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Aliases for ARFGAP2 Gene

Aliases for ARFGAP2 Gene

  • ADP Ribosylation Factor GTPase Activating Protein 2 2 3 5
  • Zinc Finger Protein 289, ID1 Regulated 2 3
  • GTPase-Activating Protein ZNF289 3 4
  • ZNF289 3 4
  • ADP-Ribosylation Factor GTPase-Activating Protein 2 3
  • Zinc Finger Protein 289 4
  • NBLA10535 3
  • ARF GAP 2 4
  • ZFP289 3
  • IRZ 3

External Ids for ARFGAP2 Gene

Previous HGNC Symbols for ARFGAP2 Gene

  • ZNF289

Previous GeneCards Identifiers for ARFGAP2 Gene

  • GC11M047143
  • GC11M046884
  • GC11M047185
  • GC11M047280
  • GC11M047937
  • GC11M050790
  • GC11M051585
  • GC11M052247
  • GC11M052907

Summaries for ARFGAP2 Gene

GeneCards Summary for ARFGAP2 Gene

ARFGAP2 (ADP Ribosylation Factor GTPase Activating Protein 2) is a Protein Coding gene. Among its related pathways are Golgi-to-ER retrograde transport and Transport to the Golgi and subsequent modification. GO annotations related to this gene include GTPase activator activity. An important paralog of this gene is ARFGAP3.

UniProtKB/Swiss-Prot for ARFGAP2 Gene

  • GTPase-activating protein (GAP) for ADP ribosylation factor 1 (ARF1). Implicated in coatomer-mediated protein transport between the Golgi complex and the endoplasmic reticulum. Hydrolysis of ARF1-bound GTP may lead to dissociation of coatomer from Golgi-derived membranes to allow fusion with target membranes.

Additional gene information for ARFGAP2 Gene

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ARFGAP2 Gene

Genomics for ARFGAP2 Gene

Regulatory Elements for ARFGAP2 Gene

Enhancers for ARFGAP2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11H047912 2 FANTOM5 Ensembl ENCODE dbSUPER 19.7 -741.3 -741330 13 PKNOX1 FOXA2 SIN3A FEZF1 ZNF766 ZNF143 FOS DEK NFYC REST NUP160 FNBP4 ENSG00000270060 ENSG00000200090 DDB2 ARFGAP2 KBTBD4 PTPRJ C1QTNF4 MADD
GH11H047853 1.5 Ensembl ENCODE dbSUPER 19.7 -682.1 -682050 12 PKNOX1 BRCA1 TCF12 GTF3C2 ZNF143 ATF7 FOS RUNX3 DEK JUNB C1QTNF4 FNBP4 ARFGAP2 NUP160 ENSG00000270060 ENSG00000200090 DDB2 MADD MYBPC3 KBTBD4
GH11H047989 1.5 Ensembl ENCODE dbSUPER 13.7 -814.4 -814449 4 HDGF ATF1 ARNT SIN3A FEZF1 YY1 ETS1 TCF12 GTF3C2 ATF7 NUP160 FNBP4 ENSG00000270060 ENSG00000200090 ARFGAP2 DDB2 PTPRJ-AS1 ACP2 C1QTNF4 FAM180B
GH11H047506 1.9 FANTOM5 Ensembl ENCODE dbSUPER 9.8 -336.1 -336079 14 HDGF PKNOX1 ZFP64 FOS ZC3H11A JUNB REST SREBF1 SMARCA4 GLIS1 NUP160 FNBP4 ENSG00000200090 ENSG00000270060 C1QTNF4 DDB2 ZNF408 SLC39A13 AMBRA1 CELF1
GH11H047764 1.8 FANTOM5 ENCODE dbSUPER 10.3 -589.6 -589635 4 HDGF PKNOX1 ARNT SIN3A DMAP1 ZNF2 YY1 ZNF766 CBX5 ZNF143 NUP160 FNBP4 ENSG00000270060 ENSG00000200090 DDB2 C1QTNF4 ARFGAP2 KBTBD4 PSMC3 PTPRJ
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ARFGAP2 on UCSC Golden Path with GeneCards custom track

Promoters for ARFGAP2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000039644 703 1601 HNRNPUL1 HDGF PKNOX1 ARNT SIN3A DMAP1 ZNF2 YY1 ZNF766 ZNF207

Genomic Location for ARFGAP2 Gene

Chromosome:
11
Start:
47,164,298 bp from pter
End:
47,177,503 bp from pter
Size:
13,206 bases
Orientation:
Minus strand

Genomic View for ARFGAP2 Gene

Genes around ARFGAP2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ARFGAP2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ARFGAP2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ARFGAP2 Gene

Proteins for ARFGAP2 Gene

  • Protein details for ARFGAP2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N6H7-ARFG2_HUMAN
    Recommended name:
    ADP-ribosylation factor GTPase-activating protein 2
    Protein Accession:
    Q8N6H7
    Secondary Accessions:
    • B4DX29
    • B7Z9M7
    • D3DQQ9
    • Q3LIF2
    • Q8N3I1
    • Q96SX7

    Protein attributes for ARFGAP2 Gene

    Size:
    521 amino acids
    Molecular mass:
    56720 Da
    Quaternary structure:
    • Interacts with the coatomer complex. Interacts with the C-terminal appendage domain of COPG1.
    Miscellaneous:
    • Vero cells overexpressing truncated ARFGAP2 show accumulation of cholera toxin A subunit in the Golgi complex rather than the endoplasmic reticulum.

    Three dimensional structures from OCA and Proteopedia for ARFGAP2 Gene

    Alternative splice isoforms for ARFGAP2 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ARFGAP2 Gene

Post-translational modifications for ARFGAP2 Gene

  • Ubiquitination at posLast=429429
  • Modification sites at PhosphoSitePlus

Antibody Products

No data available for DME Specific Peptides for ARFGAP2 Gene

Domains & Families for ARFGAP2 Gene

Gene Families for ARFGAP2 Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for ARFGAP2 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ARFGAP2: view

No data available for UniProtKB/Swiss-Prot for ARFGAP2 Gene

Function for ARFGAP2 Gene

Molecular function for ARFGAP2 Gene

UniProtKB/Swiss-Prot Function:
GTPase-activating protein (GAP) for ADP ribosylation factor 1 (ARF1). Implicated in coatomer-mediated protein transport between the Golgi complex and the endoplasmic reticulum. Hydrolysis of ARF1-bound GTP may lead to dissociation of coatomer from Golgi-derived membranes to allow fusion with target membranes.

Phenotypes From GWAS Catalog for ARFGAP2 Gene

Gene Ontology (GO) - Molecular Function for ARFGAP2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005096 GTPase activator activity IEA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ARFGAP2: view
genes like me logo Genes that share phenotypes with ARFGAP2: view

Animal Model Products

CRISPR Products

miRNA for ARFGAP2 Gene

miRTarBase miRNAs that target ARFGAP2

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for ARFGAP2
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ARFGAP2 Gene

Localization for ARFGAP2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ARFGAP2 Gene

Cytoplasm. Golgi apparatus membrane; Peripheral membrane protein; Cytoplasmic side. Note=Also found on peripheral punctate structures likely to be endoplasmic reticulum-Golgi intermediate compartment.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ARFGAP2 gene
Compartment Confidence
plasma membrane 5
cytosol 5
golgi apparatus 5
nucleus 4

Subcellular locations from the

Human Protein Atlas (HPA)
  • Golgi apparatus (3)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for ARFGAP2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000139 Golgi membrane IEA --
GO:0005737 cytoplasm IEA --
GO:0005794 Golgi apparatus IDA --
GO:0005829 cytosol IDA,TAS --
GO:0005886 plasma membrane IDA --
genes like me logo Genes that share ontologies with ARFGAP2: view

Pathways & Interactions for ARFGAP2 Gene

genes like me logo Genes that share pathways with ARFGAP2: view

Gene Ontology (GO) - Biological Process for ARFGAP2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006810 transport IEA --
GO:0006888 ER to Golgi vesicle-mediated transport TAS --
GO:0006890 retrograde vesicle-mediated transport, Golgi to ER TAS --
GO:0015031 protein transport IEA --
GO:0016192 vesicle-mediated transport IEA --
genes like me logo Genes that share ontologies with ARFGAP2: view

No data available for SIGNOR curated interactions for ARFGAP2 Gene

Drugs & Compounds for ARFGAP2 Gene

(1) Drugs for ARFGAP2 Gene - From: HMDB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Guanosine triphosphate Experimental Pharma 0
genes like me logo Genes that share compounds with ARFGAP2: view

Transcripts for ARFGAP2 Gene

Unigene Clusters for ARFGAP2 Gene

ADP-ribosylation factor GTPase activating protein 2:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for ARFGAP2
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for ARFGAP2 Gene

ExUns: 1a · 1b ^ 2a · 2b ^ 3a · 3b ^ 4a · 4b · 4c ^ 5a · 5b ^ 6a · 6b ^ 7a · 7b ^ 8 ^ 9 ^ 10 ^ 11 ^ 12
SP1: - - - - - - -
SP2: - - -
SP3: - -
SP4: -
SP5:
SP6:
SP7:

Relevant External Links for ARFGAP2 Gene

GeneLoc Exon Structure for
ARFGAP2
ECgene alternative splicing isoforms for
ARFGAP2

Expression for ARFGAP2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ARFGAP2 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for ARFGAP2 Gene

This gene is overexpressed in Peripheral blood mononuclear cells (17.9).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for ARFGAP2 Gene



Protein tissue co-expression partners for ARFGAP2 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of ARFGAP2 Gene:

ARFGAP2

SOURCE GeneReport for Unigene cluster for ARFGAP2 Gene:

Hs.436204

Evidence on tissue expression from TISSUES for ARFGAP2 Gene

  • Nervous system(5)
  • Eye(4.5)
  • Liver(4.3)
  • Lung(3.4)
  • Intestine(2.9)
  • Kidney(2.4)
  • Skin(2.2)
genes like me logo Genes that share expression patterns with ARFGAP2: view

Primer Products

No data available for mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for ARFGAP2 Gene

Orthologs for ARFGAP2 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for ARFGAP2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ARFGAP2 33 34
  • 99.87 (n)
dog
(Canis familiaris)
Mammalia ARFGAP2 33 34
  • 91.41 (n)
cow
(Bos Taurus)
Mammalia ARFGAP2 33 34
  • 90.45 (n)
rat
(Rattus norvegicus)
Mammalia Arfgap2 33
  • 89.17 (n)
oppossum
(Monodelphis domestica)
Mammalia ARFGAP2 34
  • 89 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Arfgap2 33 16 34
  • 88.97 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia ARFGAP2 34
  • 84 (a)
OneToOne
chicken
(Gallus gallus)
Aves ARFGAP2 33 34
  • 77.24 (n)
lizard
(Anolis carolinensis)
Reptilia -- 34
  • 73 (a)
OneToMany
-- 34
  • 66 (a)
OneToMany
-- 34
  • 63 (a)
OneToMany
-- 34
  • 63 (a)
OneToMany
-- 34
  • 63 (a)
OneToMany
-- 34
  • 63 (a)
OneToMany
-- 34
  • 63 (a)
OneToMany
-- 34
  • 63 (a)
OneToMany
tropical clawed frog
(Silurana tropicalis)
Amphibia arfgap2 33
  • 70.72 (n)
Str.6000 33
zebrafish
(Danio rerio)
Actinopterygii arfgap2 33 34
  • 70.47 (n)
wufa11e07 33
fruit fly
(Drosophila melanogaster)
Insecta ArfGAP3 33 34
  • 50.43 (n)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP005609 33
  • 50.1 (n)
worm
(Caenorhabditis elegans)
Secernentea F07F6.4 33 34
  • 48.01 (n)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes GLO3 34
  • 22 (a)
OneToMany
thale cress
(Arabidopsis thaliana)
eudicotyledons RPA 33
  • 51.34 (n)
barley
(Hordeum vulgare)
Liliopsida Hv.5106 33
sea squirt
(Ciona savignyi)
Ascidiacea -- 34
  • 40 (a)
ManyToMany
-- 34
  • 31 (a)
ManyToMany
Species where no ortholog for ARFGAP2 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for ARFGAP2 Gene

ENSEMBL:
Gene Tree for ARFGAP2 (if available)
TreeFam:
Gene Tree for ARFGAP2 (if available)

Paralogs for ARFGAP2 Gene

Variants for ARFGAP2 Gene

Sequence variations from dbSNP and Humsavar for ARFGAP2 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs1000482210 -- 47,170,873(+) CCCAG(C/G)AGGCA intron-variant
rs1000727989 -- 47,177,127(+) TAGTA(C/T)CCTTC downstream-variant-500B, upstream-variant-2KB, utr-variant-5-prime
rs1000994022 -- 47,165,097(+) CCTAG(A/T)GCCAG utr-variant-3-prime
rs1001019968 -- 47,175,668(+) AATTG(A/G)AATCT intron-variant
rs1001087404 -- 47,170,572(+) AACCC(A/G)GGAGG intron-variant

Variation tolerance for ARFGAP2 Gene

Residual Variation Intolerance Score: 59.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 11.35; 92.68% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ARFGAP2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ARFGAP2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for ARFGAP2 Gene

Disorders for ARFGAP2 Gene

Relevant External Links for ARFGAP2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ARFGAP2

No disorders were found for ARFGAP2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ARFGAP2 Gene

Publications for ARFGAP2 Gene

  1. Gamma-COP appendage domain - structure and function. (PMID: 14690497) Watson PJ … Owen DJ (Traffic (Copenhagen, Denmark) 2004) 2 3 4 60
  2. Two human ARFGAPs associated with COP-I-coated vesicles. (PMID: 17760859) Frigerio G … Duden R (Traffic (Copenhagen, Denmark) 2007) 3 4 60
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 60
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 60
  5. Neuroblastoma oligo-capping cDNA project: toward the understanding of the genesis and biology of neuroblastoma. (PMID: 12880961) Ohira M … Nakagawara A (Cancer letters 2003) 3 4 60

Products for ARFGAP2 Gene

Sources for ARFGAP2 Gene

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