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ARF6 Gene

protein-coding   GIFtS: 57

GC14P049429
ADP-ribosylation factor 6
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
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Aliases
DKFZp564M0264 2
Descriptions
ADP-ribosylation factor 6 2
External Ids
HGNC: 6591
Entrez Gene: 3822
UniProtKB: P623303
Ensembl: ENSG000001655277
Search outside databases for aliases for ARF6 gene

Previous GC identifers: GC14P047681 GC14P044155 GC14P048349

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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EntrezGene summary for ARF6:
This gene encodes a member of the human ARF gene family, which is part of the RAS superfamily. The
ARF genes encode small guanine nucleotide-binding proteins that stimulate the
ADP-ribosyltransferase activity of cholera toxin and play a role in vesicular trafficking and as
activators of phospholipase D. The product of this gene is localized to the plasma membrane, and
regulates vesicular trafficking, remodelling of membrane lipids, and signaling pathways that lead
to actin remodeling. A pseudogene of this gene is located on chromosome 7. [provided by RefSeq]

UniProtKB/Swiss-Prot: ARF6_HUMAN, P62330
Function: GTP-binding protein that functions as an allosteric activator of the cholera toxin
catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate
vesicle budding and uncoating within the Golgi apparatus

Gene Wiki entry for ARF6 (Arf6)

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the ARF6 gene  

Entrez Gene cytogenetic band: 14q21.3   Ensembl cytogenetic band:  14q22.1   HGNC cytogenetic band: 14q21.3

ARF6 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 14         GeneLoc Exon Structure

GeneLoc location for GC14P049429:     (about GC identifiers)

Start:
49,429,486 bp from pter
End:
49,433,522 bp from pter
Size:
4,037 bases
Orientation:
plus strand
RefSeq DNA sequence:
NC_000014.7  NT_026437.11  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: ARF6_HUMAN, P62330 (See protein sequence)
Recommended Name: ADP-ribosylation factor 6  
Size: 175 amino acids; 20082 Da
Subunit: Interacts with ARHGAP21, ASAP2, HERC1, PIP5K1C and UACA
Subcellular location: Golgi apparatus
PDB structures from and Proteopedia :
1E0S (3D)    2A5D (3D)    2A5F (3D)    2A5G (3D)    2BAO (3D)    2BAU (3D)    2J5X (3D)    
Secondary accessions: P26438

REFSEQ proteins: NP_001654.1  

ENSEMBL proteins: 
ENSP00000298316 


Human Recombinant Proteins 
Browse Drug Discovery Central at Invitrogen for human recombinant proteins
Browse Purified and Recombinant Proteins at Millipore
Browse Human Recombinant Proteins at Sigma-Aldrich  
Browse R&D Systems for human recombinant proteins
Browse recombinant and purified proteins available from Enzo Life Sciences
Recombinant Proteins from Abcam (ARF6, ADP Ribosylation Factor)
Human Recombinant Proteins from Abnova (ARF6)
              OriGene Purified Recombinant Human Protein: ARF6 

5/8 Gene Ontology (GO) cellular component terms (links to tree view) (see all 8 ):

GO IDQualified GO termEvidencePubMed IDs
GO:0001726 ruffle IDA9312003
GO:0005622 intracellular IEA--
GO:0005624 membrane fraction TAS8702973
GO:0005737 cytoplasm IEA--
GO:0005768 endosome TAS10913182
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Antibodies for ARF6: 
Browse Antibodies Central at Invitrogen
Millipore Mono- and Polyclonal Antibodies for the study of ARF6
Sigma-Aldrich Antibodies for ARF6
Browse R&D Systems for Antibodies
Cell Signaling Technology (CST) Antibodies for ARF6 
Antibodies from Abcam (ARF6, ADP Ribosylation Factor), each with their AbpromiseSM
Monoclonal and Polyclonal Antibodies from Abnova (ARF6)
Novus Biologicals Antibodies for ARF6

Assays for ARF6: 
Browse Invitrogen for biochemical assays
Browse Kits and Assays available from Millipore
Browse R&D Systems for biochemical assays
Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

3 InterPro domains/families:
 IPR006688 ARF
 IPR006689 ARF/SAR
 IPR005225 Small_GTP_bd


   GeneDecks  ARF6 for the domains selected above  
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Graphical View of Domain Structure for InterPro Entry P62330

ProtoNet protein and cluster: P62330

UniProtKB/Swiss-Prot: ARF6_HUMAN, P62330
Similarity: Belongs to the small GTPase superfamily. Arf family

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (ARF6)
Browse for Gene Knock-down Tools from Millipore
Abnova Chimera RNAi Products for Gene knock-down (ARF6)
              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001663

              Applied Biosystems Silencer® siRNAs for ARF6

              Sigma-Aldrich siRNA for ARF6  
                     Sigma-Aldrich shRNA Panels and shRNA for ARF6  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Clones:Browse Clone Ranger at Invitrogen for clones
Browse Clones for the Expression of Recombinant Proteins Available from Millipore
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_001663
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_001663
                                 untagged cDNA clone in CMV expression vector: NM_001663 

Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
              OriGene genome-wide validated SYBR primer pairs: NM_001663

UniProtKB/Swiss-Prot: ARF6_HUMAN, P62330
Function: GTP-binding protein that functions as an allosteric activator of the cholera toxin
catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate
vesicle budding and uncoating within the Golgi apparatus

Genatlas biochemistry entry for ARF6:
ADP ribosylation factor 6,class III,low molecular weight,widely expressed,involved in vesicular
trafficking,activator of PIP5K1A

5 MGI mutant phenotypes (inferred from 1 allele(MGI details for Arf6):

hematopoietic systemhomeostasis/metabolismlethality-prenatal/perinatalliver/biliary system

4 Gene Ontology (GO) molecular function terms (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0000166 nucleotide binding IEA--
GO:0003924 GTPase activity TAS1993656
GO:0005515 protein binding IPI9312003
GO:0005525 GTP binding TAS10913182
About this table

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
About This Section

3 Invitrogen iPath™ Online BioAtlas - Pathways for ARF6 (Maps provided by GeneGo):
 Putative integrins pathway in leukocytes. Part 1
 Pleckstrin homology proteins interactions. Part V
 A2BR signaling via G-beta/gamma dimer. Activation of PH-domain proteins. (map 2)

   GeneDecks  ARF6 for the pathways selected above  
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1 Millipore Pathway for ARF6
 Immune response CD16 signaling in NK cells

   GeneDecks  ARF6 for the pathways selected above  
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5 Sigma-Aldrich "Your Favorite Gene" Pathways for  ARF6  (Your Favorite Gene powered by Ingenuity) 
 Clathrin-mediated Endocytosis
 Lipid Antigen Presentation by CD1
 Integrin Signaling
 Fc&gamma
 Macropinocytosis

   GeneDecks  ARF6 for the pathways selected above  
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 Gene Network CentralTM Interacting Genes and Proteins Network for  ARF6 


5/123 Interacting proteins for ARF6 (P623301 ENSP000002983163) via UniProtKB, MINT, and/or STRING (see all 123 )
InteractantInteraction Details
GeneCardExternal ID(s)
ARFIP2P533651, ENSP000002545843EBI-638181, EBI-638194 STRING (score=.995)
PABPC4Q133101, ENSP000003619493EBI-638181, EBI-372844 STRING (score=.704)
ATP6V1C1P212831EBI-638181, EBI-988663
DHPSP493661EBI-638181, EBI-741925
DYNC1H1Q142041EBI-638181, EBI-356015
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5/12 Gene Ontology (GO) biological process terms (links to tree view) (see all 12 ):

GO IDQualified GO termEvidencePubMed IDs
GO:0001889 liver development IEA--
GO:0006915 apoptosis IEA--
GO:0006928 cell motion TAS10036235
GO:0007155 cell adhesion TAS10036235
GO:0007264 small GTPase mediated signal transduction IEA--
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(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
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Enzo Life Sciences drugs & compounds for ARF6
Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for ARF6
10/24 Novoseek chemical compound relationships for ARF6 gene (see all 24 )
Compound   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
grp-1 87.93 18 10480924 (6), 9832437 (1), 17409355 (1), 18042453 (1)
gtp 77.33 65 10480924 (3), 9314528 (3), 10391955 (3), 16737952 (3) (see all 29)
ac-ap 74.59 1 16280360 (1)
gdp 68.27 21 16527809 (3), 15126638 (2), 11266366 (2), 10480924 (1) (see all 12)
adp 57.74 22 12810696 (2), 11463641 (2), 15778454 (1), 18764822 (1) (see all 15)
phosphatidylinositol-3,4,5-trisphosphate 55.14 2 10848997 (1), 10917667 (1)
pip2 53.12 7 11535619 (3), 16413288 (2), 15817676 (1)
phosphatidylinositol 50.15 13 10788515 (2), 17284522 (2), 11950936 (1), 16737952 (1) (see all 8)
butanol 44.62 2 11516649 (1), 16280360 (1)
phosphatidylinositol 3-phosphate 44.18 1 14617802 (1)
About this table


(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (ARF6)
Browse for Gene Knock-down Tools from Millipore
Abnova Chimera RNAi Products for Gene knock-down (ARF6)
              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001663

              Sigma-Aldrich siRNA for ARF6  
                     Sigma-Aldrich shRNA Panels and shRNA for ARF6  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Applied Biosystems Silencer® siRNAs: 

NM_001663  

REFSEQ mRNAs for ARF6 gene: 

NM_001663.3   

Applied Biosystems TaqMan ® Gene Expression Assays: 

NM_001663  

              OriGene GFP tagged cDNA clone in CMV expression vector: NM_001663
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_001663
                                 untagged cDNA clone in CMV expression vector: NM_001663 

Additional cDNA sequence: 

AF047432.1 AF493885.1 AK313790.1 AL117621.1 BC002952.1 BC008918.2 BC030291.1 BT019868.1 
CR541939.1 CR541964.1 CR619019.1 M57763.1 

11 DOTS entries:

DT.455400  DT.86609000  DT.100036242  DT.91769001  DT.100796741  DT.100776347  DT.120773507  DT.91768995 
DT.95190179  DT.102824727  DT.97855842 

24/422 AceView cDNA sequences (see all 422 ):

CA432745 AW021268 N34085 AW500468 BU661396 AA098905 CF457008 BE888369 
CF135624 BU194727 CA446051 BX339473 AW571594 BU685067 AA806565 AI337720 
BM836058 AI332406 AA505121 BM714048 AW014842 AW371856 BM683479 BQ315714 

highest scoring ESTs for ARF6:

AF047432 AA150988 AA252864 AA252925 AA327525 AA360753 AA382214 AA436985 AA437257 AA604056 

Unigene Cluster for ARF6:

ADP-ribosylation factor 6
Hs.525330  [show with all ESTs]
Unigene Representative Sequence: NM_001663


GeneLoc Exon Structure

1 Ensembl transcript including schematic representation:
ENST00000298316  
(Experimental results according to 1GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
About This Section

ARF6 expression in normal and diseased human tissues

 Applied Biosystems TaqMan ® Gene Expression Assays for ARF6

1 / 2 / 3

10 probe-sets matching ARF6 gene


Affymetrix
probe-set
Array  GeneAnnot data GeneNote data GeneTide data
# genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank

54829_s_at2, 3 U95-B 1 1.00 1.00 0.98 1.13 AA147881 0.60 1.00 0.82 1
43480_at2, 3 U95-B 1 1.00 1.00 0.98 1.04 AI491714 0.40 1.00 0.76 1
54831_r_at2, 3 U95-B 1 1.00 1.00 0.93 0.83 AA147881 0.60 1.00 0.82 1

33152_at2, 3 U95-A 1 0.81 1.00 0.74 0.25 AF047432 1.00 1.00 1.00 1

224788_at2, 3 U133-B 1 1.00 1.00 -- -- AV700721 0.40 1.00 0.76 1

203311_s_at2, 3 U133-A 1 1.00 1.00 -- -- M57763 0.80 1.00 0.91 1

203312_x_at2, 3 U133-A 1 0.73 1.00 -- -- NM_001663 0.60 1.00 0.82 1

224788_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --

203311_s_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --

203312_x_at2 U133Plus2 1 0.73 1.00 -- -- -- -- -- -- --
GeneDecks  ARF6 for binary patterns associated with the probe-sets selected above  
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Data from (Publications) and GNF BioGPS
    About these images
About these images

CGAP SAGE TAG: --

SOURCE GeneReport for Unigene cluster: Hs.525330

Expression variation in blood from EXPOLDB for ARF6

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section


Orthologs for ARF6 gene from 5/19 species (see all 19 )
Organism Gene Locus Description Human
Similarity
NCBI accessions
dog
(Canis familiaris)
ARF61   -- ADP-ribosylation factor 6 97.52(n)
100(a)
490679  XM_547801.2  XP_547801.1 
chimpanzee
(Pan troglodytes)
ARF61   -- ADP-ribosylation factor 6 100(n)
100(a)
452892  XM_509935.2  XP_509935.2 
cow
(Bos taurus)
ARF61   -- ADP-ribosylation factor 6 97.52(n)
100(a)
614161  XM_865538.2  XP_870631.2 
rat
(Rattus norvegicus)
Arf61   -- ADP-ribosylation factor 6 96.57(n)
100(a)
79121  NM_024152.2  NP_077066.1 
mouse
(Mus musculus)
Arf61, 5 125
ADP-ribosylation factor 61, 5 96(n)1
100(a)1
118451  NM_007481.21  NP_031507.11 
 AA9589655  AI7886695  (see all 14)
About this table        Species with no ortholog for ARF6

ENSEMBL Gene Tree for ARF6
(Paralogs according to 1HomoloGene
and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
About This Section

Paralogs for ARF6 gene
ARF32  ARF12  

(According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section


10/50 NCBI SNPs in ARF6 are shown (see all 50 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 11)
ABGenomic DataTranscription DataAllele Frequencies
SNP IDValidChr 14 posSequenceRecsAA
Chg
TypeMoreRecsAllele
freq
PopTotal
sample
More
------------
rs31009081,2
A,C,F,H49429239(-) GGGGGA/GCCCTA 1 -- ng514Minor allele frequency- G:0.15EU EA WA 412
rs31261801,2
C,F,H49433876(+) CTTAAG/ATTCAG 1 -- ng317Minor allele frequency- A:0.07EU EA WA NA 560
--
rs31009091,2
A,C49427662(-) aagtgA/Ttctgc 1 -- ng51 tfbs30--------
--
rs153821,2
C,F49431088(+) TTTTTA/TTTTCG 1 -- ut311Minor allele frequency- T:0.02MN 184
--
rs31008981,2
H49430511(-) GTGCAG/TCTCCT 1 L/M mis14Minor allele frequency- T:0.00EU EA WA 412
--
rs732738021,2
--49429163(+) GGCACA/CGAGGT 1 -- ng510--------
--
rs32176621,2
--49431995(+) CATGC-/AAATAATA 1 -- ut310--------
--
rs114088791,2
--49429064(+) AAAAA-/ACAAAA 1 -- ng510--------
--
rs732754061,2
--49432584(+) CTCTTA/GACAAA 1 -- ut310--------
--
rs617555641,2
--49430385(+) TCAACA/GTATGG 1 V/I mis10--------
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HapMap Linkage Disequilibrium images for ARF6 (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

OMIM: 600464

6 Novoseek disease relationships for ARF6 gene

Disease   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
glioblastoma 25.77 1 11226253 (1)
cholera 21.75 3 11106366 (1), 1447192 (1), 16552056 (1)
invasive cancer 10.41 5 15087504 (2), 16636290 (1)
tumors 3.77 10 16413265 (5), 15210957 (2), 18094045 (1)
cancer 0.00 2 14607973 (2)
breast cancer 0.00 19 15087504 (4), 18084281 (4), 16636290 (1), 19262097 (1) (see all 5)
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(Possibly Related Articles in Doctor's Guide)
About This Section

  --

(in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
About This Section

10/229 PubMed articles for ARF6 gene (see all 229 ):
(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)
(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
About This Section

Entrez Gene: 382 HGNC: 659 AceView: ARF6 Ensembl:ENSG00000165527 euGenes: HUgn382
ECgene: ARF6 H-InvDB: ARF6
(According to HUGE)
About This Section

  --
(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

  --
(Available from WIS Yeda, Salk, Tufts)
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  --
(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
About This Section



Products for ARF6:
 TaqMan ® Gene Expression Assays
 TaqMan ® Genotyping Assays
  Free SNP selection tool



  Invitrogen iPath Pathways  Invitrogen BLOCK-iT™ RNAi
  Invitrogen Antibodies  Invitrogen Assays
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 Predesigned and custom siRNAs for ARF6 Antibodies for ARF6
 Explore super-pooled esiRNAs Browse proteins at Sigma-Aldrich
 Lentivirus-delivered shRNAs for ARF6 Browse small molecules at Sigma-Aldrich
 "Your Favorite Gene" Pathwaysfeedback


  
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 Antibodies & Assays for ARF6 

 Recombinant Proteins
(ARF6, ADP Ribosylation Factor)
 Antibodies (ARF6, ADP Ribosylation Factor)
 Tagged/untagged cDNA clones
 Validated SYBR primer pairs
 Purified proteins from HEK293T cells
 Western blot validated antibodies
 shRNA in GFP-retroviral vector
 Search Tocris compounds for ARF6




 Drugs for ARF6
 Search www.enzolifesicences.com for proteins, assays, substrates, inhibitors & antibodies
 Antibodies for ARF6

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