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Aliases & Descriptions for ARF6
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| | | Descriptions |
|---|
| ADP-ribosylation factor 6 2 |
|
| | Search outside databases for aliases for ARF6 genePrevious GC identifers: GC14P047681 GC14P044155 GC14P048349 |
Summaries for ARF6(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for ARF6: This gene encodes a member of the human ARF gene family, which is part of the RAS superfamily. The ARF genes encode small guanine nucleotide-binding proteins that stimulate the ADP-ribosyltransferase activity of cholera toxin and play a role in vesicular trafficking and as activators of phospholipase D. The product of this gene is localized to the plasma membrane, and regulates vesicular trafficking, remodelling of membrane lipids, and signaling pathways that lead to actin remodeling. A pseudogene of this gene is located on chromosome 7. [provided by RefSeq] UniProtKB/Swiss-Prot: ARF6_HUMAN, P62330Function: GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatusGene Wiki entry for ARF6 (Arf6) |
Genomic Location for ARF6
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the ARF6 gene 
Entrez Gene cytogenetic band: 14q21.3 Ensembl cytogenetic band: 14q22.1 HGNC cytogenetic band: 14q21.3ARF6 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 14 GeneLoc Exon Structure GeneLoc location for GC14P049429:
(about GC identifiers)
Start:
|
49,429,486 bp from pter |
End:
|
49,433,522 bp from pter |
Size:
|
4,037 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000014.7 NT_026437.11
| Proteins for ARF6
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: ARF6_HUMAN, P62330 (See
protein sequence)Recommended Name: ADP-ribosylation factor 6 Size: 175 amino acids; 20082 Da
Subunit: Interacts with ARHGAP21, ASAP2, HERC1, PIP5K1C and UACA
Subcellular location: Golgi apparatus
PDB structures from and Proteopedia :1E0S (3D)
 2A5D (3D)
 2A5F (3D)
 2A5G (3D)
 2BAO (3D)
 2BAU (3D)
 2J5X (3D)
 
Secondary accessions: P26438REFSEQ proteins: NP_001654.1
ENSEMBL proteins: ENSP00000298316
Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: ARF6 
5/8 Gene Ontology (GO) cellular component terms (links to tree view) (see all 8
): About this table
Antibodies for ARF6: Assays for ARF6: | Protein
Domains/ Families for ARF6(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P62330
ProtoNet protein and cluster: P62330 UniProtKB/Swiss-Prot: ARF6_HUMAN, P62330Similarity: Belongs to the small GTPase superfamily. Arf family | Gene Function for ARF6
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001663
Applied Biosystems Silencer® siRNAs for ARF6
Sigma-Aldrich siRNA for ARF6  Sigma-Aldrich shRNA Panels and shRNA for ARF6  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_001663                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_001663                                  untagged cDNA clone in CMV expression vector: NM_001663 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001663
UniProtKB/Swiss-Prot: ARF6_HUMAN, P62330Function: GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatusGenatlas biochemistry entry for ARF6:ADP ribosylation factor 6,class III,low molecular weight,widely expressed,involved in vesicular trafficking,activator of PIP5K1A5 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Arf6):
4 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for ARF6
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
5 Sigma-Aldrich "Your Favorite Gene" Pathways for ARF6 (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for ARF6 
5/123 Interacting proteins for ARF6 (P623301 ENSP000002983163) via UniProtKB, MINT, and/or STRING (see all 123
)About this table
5/12 Gene Ontology (GO) biological process terms (links to tree view) (see all 12
): About this table
|
Drugs & Compounds for ARF6(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|  |
Enzo Life Sciences drugs & compounds for ARF6 |
Browse Tocris compounds for ARF6 10/24 Novoseek chemical compound relationships for ARF6 gene (see all 24
)
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| grp-1 |
87.93 |
18 |
10480924 (6), 9832437 (1), 17409355 (1), 18042453 (1) |
| gtp |
77.33 |
65 |
10480924 (3), 9314528 (3), 10391955 (3), 16737952 (3) (see all 29) |
| ac-ap |
74.59 |
1 |
16280360 (1) |
| gdp |
68.27 |
21 |
16527809 (3), 15126638 (2), 11266366 (2), 10480924 (1) (see all 12) |
| adp |
57.74 |
22 |
12810696 (2), 11463641 (2), 15778454 (1), 18764822 (1) (see all 15) |
| phosphatidylinositol-3,4,5-trisphosphate |
55.14 |
2 |
10848997 (1), 10917667 (1) |
| pip2 |
53.12 |
7 |
11535619 (3), 16413288 (2), 15817676 (1) |
| phosphatidylinositol |
50.15 |
13 |
10788515 (2), 17284522 (2), 11950936 (1), 16737952 (1) (see all 8) |
| butanol |
44.62 |
2 |
11516649 (1), 16280360 (1) |
| phosphatidylinositol 3-phosphate |
44.18 |
1 |
14617802 (1) |
About this table
|
Transcripts for ARF6(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001663
Sigma-Aldrich siRNA for ARF6  Sigma-Aldrich shRNA Panels and shRNA for ARF6  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_001663 REFSEQ mRNAs for ARF6 gene: NM_001663.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001663               OriGene GFP tagged cDNA clone in CMV expression vector: NM_001663                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_001663                                  untagged cDNA clone in CMV expression vector: NM_001663  Additional cDNA sequence: AF047432.1 AF493885.1 AK313790.1 AL117621.1 BC002952.1 BC008918.2 BC030291.1 BT019868.1 CR541939.1 CR541964.1 CR619019.1 M57763.1 11 DOTS entries: DT.455400 DT.86609000 DT.100036242 DT.91769001 DT.100796741 DT.100776347 DT.120773507 DT.91768995 DT.95190179 DT.102824727 DT.97855842 24/422 AceView cDNA sequences (see all 422
):CA432745 AW021268 N34085 AW500468 BU661396 AA098905 CF457008 BE888369 CF135624 BU194727 CA446051 BX339473 AW571594 BU685067 AA806565 AI337720 BM836058 AI332406 AA505121 BM714048 AW014842 AW371856 BM683479 BQ315714
highest scoring ESTs for ARF6:AF047432 AA150988 AA252864 AA252925 AA327525 AA360753 AA382214 AA436985 AA437257 AA604056 Unigene Cluster for ARF6: ADP-ribosylation factor 6 Hs.525330 [show with all ESTs]Unigene Representative Sequence: NM_001663
GeneLoc Exon Structure
1 Ensembl transcript including schematic representation: ENST00000298316
|
Expression for ARF6
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| ARF6 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for ARF6
1 / 2 / 3 10 probe-sets matching ARF6 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: --
SOURCE GeneReport for Unigene cluster: Hs.525330
Expression variation in blood from EXPOLDB for ARF6 |
Orthologs for ARF6
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for ARF6 gene from 5/19 species (see all 19
)
About this table Species with no ortholog for ARF6
ENSEMBL Gene Tree for ARF6 | Paralogs for ARF6(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for ARF6 gene
- ARF32 ARF12
|
SNPs/Variants for ARF6(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for ARF6 (up to first 250kb)
|
Disorders & Mutations for ARF6
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 600464
6 Novoseek disease relationships for ARF6 gene
About this table
|
Medical News for ARF6(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for ARF6 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/229 PubMed articles for ARF6 gene (see all 229
):- Molecular identification of ADP-ribosylation factor mRNAs and their expression in mammalian cells. (PubMed id 1993656)2, 3, 4 Tsuchiya M.... Vaughan M. (1991)
- Myristoylation is required for the intracellular localization and endocytic function of ARF6. (PubMed id 7589240)1, 3, 4 D'Souza-Schorey C. and Stahl P.D. (1995)
- The structural GDP/GTP cycle of human Arf6. (PubMed id 11266366)1, 3, 4 Pasqualato S.... Cherfils J. (2001)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- ARF6 stimulates clathrin/AP-2 recruitment to synaptic membranes by activating phosphatidylinositol phosphate kinase type Igamma. (PubMed id 12847086)3, 4 Krauss M.... Haucke V. (2003)
- Assignment of the human ADP-ribosylation factor 6 (ARF6) gene to chromosome 7q22.1 by radiation hybrid mapping. (PubMed id 10343114)2, 3 Kim H.S. (1999)
- Identification of genes expressed in human CD34(+) hematopoietic stem/progenitor cells by expressed sequence tags and efficient full-length cDNA cloning. (PubMed id 9653160)3, 4 Mao M....Chen Z. (1998)
- Separation of membrane trafficking and actin remodeling functions of ARF6 with an effector domain mutant. (PubMed id 10913182)1, 3 Al-Awar O....Donaldson J.G. (2000)
- Arf6 recruits the Rac GEF Kalirin to the plasma membrane facilitating Rac activation. (PubMed id 17640372)1, 3 Koo T.H....Donaldson J.G. (2007)
- ARF6 regulates angiotensin II type 1 receptor endocytosis by controlling the recruitment of AP-2 and clathrin. (PubMed id 17719203)1, 3 Poupart M.E....Claing A. (2007)
|
Search for ARF6
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing ARF6
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing ARF6
(According to HUGE)
About This Section
| -- |
Specialized Databases showing ARF6(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for ARF6(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for ARF6:

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